Wall clock time and date at job start Fri Apr 10 2020 15:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47248 * 274.17577 * 3 2 1 5 5 H 1.48501 * 109.47302 * 34.17432 * 3 2 1 6 6 H 1.48501 * 109.47198 * 154.17611 * 3 2 1 7 7 C 1.38956 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00095 * 340.41898 * 7 2 1 9 9 N 1.37094 * 119.99868 * 160.41459 * 7 2 1 10 10 C 1.46501 * 119.99887 * 136.59960 * 9 7 2 11 11 C 1.50698 * 109.46932 * 91.67193 * 10 9 7 12 12 O 1.20826 * 119.99887 * 2.59643 * 11 10 9 13 13 O 1.34235 * 119.99796 * 182.60003 * 11 10 9 14 14 C 1.34777 * 120.00474 * 316.88013 * 9 7 2 15 15 O 1.21291 * 119.99494 * 359.72517 * 14 9 7 16 16 C 1.50702 * 120.00152 * 179.72101 * 14 9 7 17 17 C 1.53004 * 109.46717 * 180.02562 * 16 14 9 18 18 H 1.08993 * 109.87467 * 53.99568 * 17 16 14 19 19 C 1.54105 * 109.87387 * 175.00400 * 17 16 14 20 20 C 1.54810 * 104.18669 * 121.45369 * 19 17 16 21 21 C 1.54994 * 102.09332 * 20.87633 * 20 19 17 22 22 H 1.09004 * 110.61495 * 81.63794 * 21 20 19 23 23 C 1.52998 * 110.61707 * 204.47216 * 21 20 19 24 24 C 1.52995 * 117.50466 * 248.74738 * 23 21 20 25 25 C 1.52998 * 117.49934 * 180.08662 * 23 21 20 26 26 O 1.43746 * 109.87624 * 292.83057 * 17 16 14 27 27 H 0.96991 * 119.99551 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47836 * 211.67053 * 10 9 7 29 29 H 1.09001 * 109.47404 * 331.67554 * 10 9 7 30 30 H 0.96708 * 116.99241 * 179.97438 * 13 11 10 31 31 H 1.08994 * 109.46881 * 299.99881 * 16 14 9 32 32 H 1.08992 * 109.46614 * 60.00190 * 16 14 9 33 33 H 1.09002 * 110.48262 * 240.12550 * 19 17 16 34 34 H 1.08997 * 110.48676 * 2.63846 * 19 17 16 35 35 H 1.08999 * 110.90373 * 139.07735 * 20 19 17 36 36 H 1.08997 * 110.90497 * 262.67449 * 20 19 17 37 37 H 1.09004 * 115.55091 * 34.42398 * 23 21 20 38 38 H 1.09000 * 117.49351 * 0.02562 * 24 23 21 39 39 H 1.09003 * 117.49979 * 145.01678 * 24 23 21 40 40 H 1.08998 * 117.50097 * 214.98474 * 25 23 21 41 41 H 1.08993 * 117.49850 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4074 2.0974 -1.3963 5 1 1.4926 2.6256 0.7864 6 1 3.5871 1.4162 0.6099 7 6 2.0089 -1.2034 -0.0005 8 1 1.5158 -2.1118 0.3125 9 7 3.3204 -1.2376 -0.3985 10 6 4.2972 -2.0187 0.3643 11 6 4.3868 -3.4092 -0.2097 12 8 3.7398 -3.7022 -1.1872 13 8 5.1854 -4.3224 0.3651 14 6 3.7122 -0.5481 -1.4883 15 8 2.9034 0.0987 -2.1198 16 6 5.1550 -0.5807 -1.9221 17 6 5.3301 0.2790 -3.1756 18 1 4.9429 1.2816 -2.9944 19 6 6.8218 0.3541 -3.5552 20 6 6.8763 -0.2146 -4.9940 21 6 5.4109 -0.0402 -5.4678 22 1 5.2365 0.9805 -5.8083 23 6 5.0810 -1.0403 -6.5777 24 6 4.8519 -0.4844 -7.9845 25 6 3.6684 -1.0039 -7.1644 26 8 4.6375 -0.3232 -4.2819 27 1 -0.4849 0.8400 -0.0004 28 1 5.2734 -1.5376 0.3048 29 1 3.9830 -2.0754 1.4065 30 1 5.2095 -5.2008 -0.0387 31 1 5.7837 -0.1889 -1.1226 32 1 5.4450 -1.6080 -2.1422 33 1 7.1677 1.3877 -3.5401 34 1 7.4189 -0.2569 -2.8783 35 1 7.5579 0.3657 -5.6160 36 1 7.1599 -1.2670 -4.9858 37 1 5.5660 -2.0128 -6.4937 38 1 4.9366 0.5939 -8.1195 39 1 5.1860 -1.0912 -8.8261 40 1 3.2244 -1.9523 -7.4668 41 1 2.9741 -0.2677 -6.7595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:17:21 Heat of formation + Delta-G solvation = -126.725383 kcal Electronic energy + Delta-G solvation = -25374.840073 eV Core-core repulsion = 21642.588262 eV Total energy + Delta-G solvation = -3732.251810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.06963 -39.56448 -38.40220 -36.61165 -35.69824 -34.38501 -32.37145 -31.93718 -31.02976 -27.95487 -27.00708 -24.24371 -22.59163 -22.32376 -21.56925 -20.75675 -20.41106 -19.15724 -17.68971 -17.28646 -16.62387 -16.20684 -15.79290 -15.64247 -15.45635 -15.19719 -14.70035 -14.54394 -13.91908 -13.56896 -13.41615 -12.93905 -12.66571 -12.58327 -12.17567 -12.11538 -11.81313 -11.62841 -11.51557 -11.45282 -11.12390 -11.05943 -10.99778 -10.93591 -10.62299 -10.30316 -10.21502 -10.03891 -9.97846 -9.92974 -9.28558 -8.54596 -8.46688 -7.68924 -6.15218 -3.93409 2.69881 3.19428 3.39629 3.42659 3.58826 3.65055 4.01076 4.27772 4.34758 4.51811 4.58732 4.64550 4.91000 4.98988 5.04409 5.07591 5.19243 5.31941 5.40097 5.44817 5.45978 5.53788 5.62476 5.70966 5.72545 5.76891 5.81111 5.87611 5.99072 6.00609 6.02853 6.09422 6.16819 6.30633 6.37196 6.86388 7.32710 7.87456 7.96782 8.36151 8.76574 8.94216 9.44068 9.80014 10.91168 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005976 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.402328 B = 4684.391573 C = 5558.999290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.095 3.905 3 Si 0.904 3.096 4 H -0.254 1.254 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.349 4.349 8 H 0.090 0.910 9 N -0.457 5.457 10 C 0.116 3.884 11 C 0.448 3.552 12 O -0.491 6.491 13 O -0.528 6.528 14 C 0.466 3.534 15 O -0.515 6.515 16 C -0.142 4.142 17 C 0.096 3.904 18 H 0.073 0.927 19 C -0.154 4.154 20 C -0.145 4.145 21 C 0.100 3.900 22 H 0.066 0.934 23 C -0.148 4.148 24 C -0.177 4.177 25 C -0.165 4.165 26 O -0.339 6.339 27 H 0.272 0.728 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.400 0.600 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.259 -1.581 -6.613 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.114 4.114 3 Si 0.734 3.266 4 H -0.180 1.180 5 H -0.234 1.234 6 H -0.205 1.205 7 C -0.474 4.474 8 H 0.108 0.892 9 N -0.181 5.181 10 C -0.011 4.011 11 C 0.287 3.713 12 O -0.376 6.376 13 O -0.340 6.340 14 C 0.255 3.745 15 O -0.394 6.394 16 C -0.182 4.182 17 C 0.037 3.963 18 H 0.091 0.909 19 C -0.192 4.192 20 C -0.182 4.182 21 C 0.042 3.958 22 H 0.084 0.916 23 C -0.166 4.166 24 C -0.214 4.214 25 C -0.202 4.202 26 O -0.257 6.257 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.258 0.742 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.227 -0.957 -7.040 17.714 hybrid contribution 0.577 0.052 -0.136 0.595 sum 16.805 -0.906 -7.176 18.295 Atomic orbital electron populations 1.69758 1.06781 1.28053 1.45306 1.25240 0.94860 0.99135 0.92190 0.86494 0.79071 0.82591 0.78427 1.17961 1.23426 1.20516 1.18723 0.83892 0.95882 1.48953 0.89228 1.43338 1.08208 1.43626 1.22949 1.21061 0.96030 0.85628 0.98392 1.24859 0.75705 0.88637 0.82085 1.90766 1.41235 1.79919 1.25664 1.84567 1.64011 1.25554 1.59855 1.20235 0.89685 0.83910 0.80640 1.90579 1.53882 1.42304 1.52611 1.21949 0.97025 1.01920 0.97333 1.22396 0.89967 0.96836 0.87087 0.90899 1.23064 0.97140 1.01927 0.97089 1.23111 0.97245 1.02023 0.95845 1.22605 0.89620 0.96645 0.86883 0.91643 1.22169 1.01392 1.00182 0.92865 1.22978 1.03886 1.01059 0.93517 1.22871 0.91255 1.03318 1.02731 1.89163 1.46355 1.76054 1.14166 0.91821 0.88285 0.86224 0.74235 0.89120 0.89466 0.90681 0.90346 0.90541 0.90548 0.87550 0.88887 0.88739 0.88754 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -27.04 13.96 55.50 0.77 -26.27 16 2 C 0.09 2.84 4.84 -17.46 -0.08 2.75 16 3 Si 0.90 23.88 24.89 -169.99 -4.23 19.65 16 4 H -0.25 -7.07 6.32 56.52 0.36 -6.72 16 5 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.35 -10.10 9.67 -14.93 -0.14 -10.25 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.46 -11.15 1.65 -116.10 -0.19 -11.34 16 10 C 0.12 2.08 5.76 -5.19 -0.03 2.05 16 11 C 0.45 7.98 8.15 36.00 0.29 8.28 16 12 O -0.49 -11.08 17.15 -18.75 -0.32 -11.40 16 13 O -0.53 -6.92 13.42 -39.27 -0.53 -7.45 16 14 C 0.47 11.39 5.73 -10.98 -0.06 11.33 16 15 O -0.52 -14.83 11.14 -5.78 -0.06 -14.89 16 16 C -0.14 -2.57 3.76 -27.88 -0.10 -2.67 16 17 C 0.10 1.66 2.93 -26.15 -0.08 1.58 16 18 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 19 C -0.15 -1.87 6.64 -25.20 -0.17 -2.03 16 20 C -0.14 -1.66 6.59 -24.72 -0.16 -1.82 16 21 C 0.10 1.46 3.49 -25.68 -0.09 1.37 16 22 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 23 C -0.15 -1.96 5.47 -90.62 -0.50 -2.46 16 24 C -0.18 -1.93 10.19 -26.70 -0.27 -2.20 16 25 C -0.16 -2.26 10.25 -26.70 -0.27 -2.53 16 26 O -0.34 -6.64 10.28 -46.56 -0.48 -7.12 16 27 H 0.27 7.98 8.31 -40.82 -0.34 7.64 16 28 H 0.10 1.38 6.50 -51.93 -0.34 1.04 16 29 H 0.12 1.96 8.03 -51.93 -0.42 1.54 16 30 H 0.40 3.60 9.10 45.56 0.41 4.01 16 31 H 0.09 1.31 7.40 -51.93 -0.38 0.93 16 32 H 0.09 1.51 7.87 -51.93 -0.41 1.10 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.11 1.34 8.01 -51.93 -0.42 0.93 16 38 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -38.62 340.18 -6.91 -45.53 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.32 Total: 4.78 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.67 Total: 3.38 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.58 Total: -37.61 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.39 Total: -40.86 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.23 Total: 19.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.62 -6.91 -45.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.194 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds