Wall clock time and date at job start Fri Apr 10 2020 15:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47248 * 274.17577 * 3 2 1 5 5 H 1.48501 * 109.47302 * 34.17432 * 3 2 1 6 6 H 1.48501 * 109.47198 * 154.17611 * 3 2 1 7 7 C 1.38956 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00095 * 340.41898 * 7 2 1 9 9 N 1.37094 * 119.99868 * 160.41459 * 7 2 1 10 10 C 1.46501 * 119.99887 * 136.59960 * 9 7 2 11 11 C 1.50698 * 109.46932 * 91.67193 * 10 9 7 12 12 O 1.20826 * 119.99887 * 2.59643 * 11 10 9 13 13 O 1.34235 * 119.99796 * 182.60003 * 11 10 9 14 14 C 1.34777 * 120.00474 * 316.88013 * 9 7 2 15 15 O 1.21291 * 119.99494 * 359.72517 * 14 9 7 16 16 C 1.50702 * 120.00152 * 179.72101 * 14 9 7 17 17 C 1.53004 * 109.46717 * 180.02562 * 16 14 9 18 18 H 1.08993 * 109.87467 * 53.99568 * 17 16 14 19 19 C 1.54105 * 109.87387 * 175.00400 * 17 16 14 20 20 C 1.54810 * 104.18669 * 121.45369 * 19 17 16 21 21 C 1.54994 * 102.09332 * 20.87633 * 20 19 17 22 22 H 1.09004 * 110.61495 * 81.63794 * 21 20 19 23 23 C 1.52998 * 110.61707 * 204.47216 * 21 20 19 24 24 C 1.52995 * 117.50466 * 248.74738 * 23 21 20 25 25 C 1.52998 * 117.49934 * 180.08662 * 23 21 20 26 26 O 1.43746 * 109.87624 * 292.83057 * 17 16 14 27 27 H 0.96991 * 119.99551 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47836 * 211.67053 * 10 9 7 29 29 H 1.09001 * 109.47404 * 331.67554 * 10 9 7 30 30 H 0.96708 * 116.99241 * 179.97438 * 13 11 10 31 31 H 1.08994 * 109.46881 * 299.99881 * 16 14 9 32 32 H 1.08992 * 109.46614 * 60.00190 * 16 14 9 33 33 H 1.09002 * 110.48262 * 240.12550 * 19 17 16 34 34 H 1.08997 * 110.48676 * 2.63846 * 19 17 16 35 35 H 1.08999 * 110.90373 * 139.07735 * 20 19 17 36 36 H 1.08997 * 110.90497 * 262.67449 * 20 19 17 37 37 H 1.09004 * 115.55091 * 34.42398 * 23 21 20 38 38 H 1.09000 * 117.49351 * 0.02562 * 24 23 21 39 39 H 1.09003 * 117.49979 * 145.01678 * 24 23 21 40 40 H 1.08998 * 117.50097 * 214.98474 * 25 23 21 41 41 H 1.08993 * 117.49850 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4074 2.0974 -1.3963 5 1 1.4926 2.6256 0.7864 6 1 3.5871 1.4162 0.6099 7 6 2.0089 -1.2034 -0.0005 8 1 1.5158 -2.1118 0.3125 9 7 3.3204 -1.2376 -0.3985 10 6 4.2972 -2.0187 0.3643 11 6 4.3868 -3.4092 -0.2097 12 8 3.7398 -3.7022 -1.1872 13 8 5.1854 -4.3224 0.3651 14 6 3.7122 -0.5481 -1.4883 15 8 2.9034 0.0987 -2.1198 16 6 5.1550 -0.5807 -1.9221 17 6 5.3301 0.2790 -3.1756 18 1 4.9429 1.2816 -2.9944 19 6 6.8218 0.3541 -3.5552 20 6 6.8763 -0.2146 -4.9940 21 6 5.4109 -0.0402 -5.4678 22 1 5.2365 0.9805 -5.8083 23 6 5.0810 -1.0403 -6.5777 24 6 4.8519 -0.4844 -7.9845 25 6 3.6684 -1.0039 -7.1644 26 8 4.6375 -0.3232 -4.2819 27 1 -0.4849 0.8400 -0.0004 28 1 5.2734 -1.5376 0.3048 29 1 3.9830 -2.0754 1.4065 30 1 5.2095 -5.2008 -0.0387 31 1 5.7837 -0.1889 -1.1226 32 1 5.4450 -1.6080 -2.1422 33 1 7.1677 1.3877 -3.5401 34 1 7.4189 -0.2569 -2.8783 35 1 7.5579 0.3657 -5.6160 36 1 7.1599 -1.2670 -4.9858 37 1 5.5660 -2.0128 -6.4937 38 1 4.9366 0.5939 -8.1195 39 1 5.1860 -1.0912 -8.8261 40 1 3.2244 -1.9523 -7.4668 41 1 2.9741 -0.2677 -6.7595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:17:20 Heat of formation + Delta-G solvation = -155.569050 kcal Electronic energy + Delta-G solvation = -25376.090828 eV Core-core repulsion = 21642.588262 eV Total energy + Delta-G solvation = -3733.502565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58869 -40.81918 -40.01565 -37.68932 -37.07566 -36.25624 -34.37759 -33.24695 -32.33718 -29.61939 -28.35867 -26.04752 -23.82929 -23.33022 -22.93358 -21.96474 -21.48002 -20.92865 -19.15384 -19.04837 -18.03058 -17.54284 -17.36251 -17.01247 -16.91492 -16.56732 -16.41709 -15.70581 -15.48414 -15.22515 -14.75468 -14.45872 -14.26920 -14.14461 -13.78056 -13.41961 -13.09030 -13.05390 -12.98823 -12.51381 -12.47434 -12.44430 -12.39044 -12.18457 -12.06363 -11.98934 -11.64426 -11.56162 -11.26311 -10.99744 -10.77728 -10.54908 -10.39532 -9.72586 -8.42124 -6.20483 1.22258 1.30142 1.35648 1.51324 1.76096 2.26885 2.47864 2.54990 2.70534 3.06630 3.24263 3.48950 3.64135 3.78279 3.92918 3.97094 4.04251 4.09869 4.16587 4.26892 4.35591 4.38839 4.54108 4.54576 4.62997 4.65556 4.72242 4.79085 4.91947 4.96486 5.00213 5.12204 5.19092 5.22590 5.28711 5.67175 5.70239 5.81658 6.17750 6.70356 6.88247 7.09475 7.29227 7.84373 8.68114 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005976 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.402328 B = 4684.391573 C = 5558.999290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.041 3.959 3 Si 0.963 3.037 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.238 1.238 7 C -0.346 4.346 8 H 0.051 0.949 9 N -0.473 5.473 10 C 0.107 3.893 11 C 0.462 3.538 12 O -0.550 6.550 13 O -0.504 6.504 14 C 0.454 3.546 15 O -0.571 6.571 16 C -0.132 4.132 17 C 0.085 3.915 18 H 0.045 0.955 19 C -0.141 4.141 20 C -0.133 4.133 21 C 0.087 3.913 22 H 0.061 0.939 23 C -0.158 4.158 24 C -0.141 4.141 25 C -0.197 4.197 26 O -0.388 6.388 27 H 0.272 0.728 28 H 0.154 0.846 29 H 0.138 0.862 30 H 0.423 0.577 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.372 -1.607 -6.476 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.163 4.163 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.161 1.161 7 C -0.472 4.472 8 H 0.069 0.931 9 N -0.196 5.196 10 C -0.018 4.018 11 C 0.304 3.696 12 O -0.439 6.439 13 O -0.316 6.316 14 C 0.246 3.754 15 O -0.453 6.453 16 C -0.171 4.171 17 C 0.026 3.974 18 H 0.063 0.937 19 C -0.179 4.179 20 C -0.171 4.171 21 C 0.030 3.970 22 H 0.079 0.921 23 C -0.176 4.176 24 C -0.178 4.178 25 C -0.234 4.234 26 O -0.308 6.308 27 H 0.081 0.919 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.284 0.716 31 H 0.157 0.843 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.420 -1.040 -6.843 22.510 hybrid contribution -1.025 -0.125 -0.222 1.056 sum 20.394 -1.165 -7.065 21.615 Atomic orbital electron populations 1.69876 1.08486 1.28750 1.48253 1.26048 0.95454 1.02615 0.92183 0.85529 0.79946 0.78600 0.76870 1.21128 1.22985 1.16102 1.18560 0.86625 0.94242 1.47813 0.93112 1.43479 1.07640 1.44549 1.23974 1.21429 0.96789 0.85320 0.98218 1.24642 0.74914 0.89162 0.80872 1.90775 1.43818 1.80946 1.28380 1.84486 1.61992 1.26386 1.58778 1.21467 0.92208 0.82093 0.79609 1.90548 1.56127 1.44556 1.54072 1.22033 0.92635 1.03274 0.99176 1.22535 0.93318 0.95005 0.86518 0.93709 1.23041 0.93190 1.03950 0.97704 1.23095 0.95125 1.03026 0.95813 1.22883 0.91523 0.96692 0.85887 0.92102 1.22295 1.00456 1.00727 0.94134 1.23069 0.99941 1.01952 0.92836 1.22840 0.91877 1.03193 1.05523 1.89128 1.48920 1.76444 1.16315 0.91880 0.82852 0.84478 0.71593 0.84263 0.88266 0.88632 0.87649 0.87602 0.89888 0.86823 0.87953 0.86082 0.88530 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.33 13.96 21.67 0.30 -60.03 16 2 C 0.04 2.51 4.84 84.93 0.41 2.92 16 3 Si 0.96 50.39 24.89 68.60 1.71 52.10 16 4 H -0.28 -16.19 6.32 99.48 0.63 -15.56 16 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.24 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.35 -20.63 9.67 84.04 0.81 -19.82 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.47 -22.72 1.65 -639.60 -1.06 -23.78 16 10 C 0.11 3.51 5.76 85.63 0.49 4.01 16 11 C 0.46 15.35 8.15 71.24 0.58 15.93 16 12 O -0.55 -24.63 17.15 21.96 0.38 -24.25 16 13 O -0.50 -11.18 13.42 -51.46 -0.69 -11.88 16 14 C 0.45 21.99 5.73 87.66 0.50 22.49 16 15 O -0.57 -33.90 11.14 7.76 0.09 -33.82 16 16 C -0.13 -4.36 3.76 29.85 0.11 -4.25 16 17 C 0.08 2.78 2.93 30.97 0.09 2.87 16 18 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 19 C -0.14 -2.79 6.64 31.59 0.21 -2.58 16 20 C -0.13 -2.54 6.59 31.89 0.21 -2.33 16 21 C 0.09 2.44 3.49 31.28 0.11 2.55 16 22 H 0.06 1.69 7.99 -2.39 -0.02 1.67 16 23 C -0.16 -4.05 5.47 -10.80 -0.06 -4.11 16 24 C -0.14 -2.82 10.19 30.62 0.31 -2.51 16 25 C -0.20 -5.59 10.25 30.62 0.31 -5.28 16 26 O -0.39 -15.37 10.28 -138.15 -1.42 -16.79 16 27 H 0.27 16.85 8.31 -92.72 -0.77 16.08 16 28 H 0.15 3.35 6.50 -2.39 -0.02 3.33 16 29 H 0.14 4.04 8.03 -2.39 -0.02 4.02 16 30 H 0.42 6.00 9.10 -74.05 -0.67 5.33 16 31 H 0.14 3.19 7.40 -2.39 -0.02 3.17 16 32 H 0.10 3.09 7.87 -2.39 -0.02 3.07 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.54 7.70 -2.39 -0.02 1.53 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 37 H 0.11 2.70 8.01 -2.38 -0.02 2.68 16 38 H 0.10 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -93.47 340.18 3.70 -89.78 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.29 Total: 18.77 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.10 Total: 9.89 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -0.75 Total: -83.81 kcal Atomic # 8 Polarization: -85.09 SS G_CDS: -1.65 Total: -86.73 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.71 Total: 52.10 kcal Total: -93.47 3.70 -89.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.793 kcal (2) G-P(sol) polarization free energy of solvation -93.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds