Wall clock time and date at job start Fri Apr 10 2020 15:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47116 * 68.00041 * 3 2 1 5 5 C 1.36777 * 119.99862 * 263.74402 * 4 3 2 6 6 H 1.07999 * 120.00091 * 191.78562 * 5 4 3 7 7 C 1.39118 * 120.00532 * 11.78377 * 5 4 3 8 8 N 1.31320 * 119.99383 * 23.28064 * 7 5 4 9 9 Si 1.86793 * 120.00263 * 203.28434 * 7 5 4 10 10 H 1.48496 * 109.47622 * 94.99148 * 9 7 5 11 11 H 1.48504 * 109.46948 * 214.98660 * 9 7 5 12 12 H 1.48500 * 109.47320 * 334.98477 * 9 7 5 13 13 C 1.34770 * 120.00005 * 84.01794 * 4 3 2 14 14 O 1.21546 * 120.00404 * 174.66298 * 13 4 3 15 15 C 1.48174 * 119.99903 * 354.66405 * 13 4 3 16 16 C 1.42333 * 126.94644 * 174.48986 * 15 13 4 17 17 C 1.35279 * 103.92235 * 180.02562 * 16 15 13 18 18 C 1.50702 * 126.65458 * 179.97438 * 17 16 15 19 19 N 1.46494 * 109.47271 * 89.99628 * 18 17 16 20 20 C 1.34956 * 126.03667 * 124.71859 * 19 18 17 21 21 C 1.35318 * 107.74309 * 179.84124 * 20 19 18 22 22 C 1.39870 * 107.92200 * 0.42413 * 21 20 19 23 23 N 1.30836 * 108.20274 * 359.73318 * 22 21 20 24 24 O 1.34029 * 106.69470 * 359.97438 * 17 16 15 25 25 N 1.20912 * 111.86148 * 359.71276 * 24 17 16 26 26 H 1.09006 * 109.46830 * 307.99962 * 3 2 1 27 27 H 1.08994 * 109.46837 * 188.00279 * 3 2 1 28 28 H 0.97004 * 119.99802 * 179.97438 * 8 7 5 29 29 H 1.08001 * 128.04149 * 359.97438 * 16 15 13 30 30 H 1.09005 * 109.47077 * 210.00127 * 18 17 16 31 31 H 1.09003 * 109.47203 * 329.99825 * 18 17 16 32 32 H 1.07992 * 126.12670 * 359.97438 * 20 19 18 33 33 H 1.08001 * 126.03600 * 180.15646 * 21 20 19 34 34 H 1.07998 * 125.89363 * 179.76321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.5165 -1.2807 5 6 3.4468 -1.8335 -1.3975 6 1 3.9813 -2.1747 -2.2717 7 6 3.1146 -2.7337 -0.3902 8 7 2.1143 -2.4730 0.4197 9 14 4.0914 -4.3132 -0.1896 10 1 5.1541 -4.1123 0.8280 11 1 3.1845 -5.4036 0.2506 12 1 4.7122 -4.6796 -1.4879 13 6 3.2061 0.3066 -2.3421 14 8 3.7017 -0.0973 -3.3759 15 6 2.7225 1.7041 -2.2490 16 6 2.8614 2.7247 -3.2312 17 6 2.2610 3.7997 -2.6708 18 6 2.1167 5.1698 -3.2817 19 7 0.8672 5.2358 -4.0434 20 6 -0.1181 6.1426 -3.8755 21 6 -1.0925 5.8636 -4.7721 22 6 -0.6933 4.7422 -5.5066 23 7 0.4813 4.3651 -5.0708 24 8 1.8192 3.4099 -1.4670 25 7 2.0750 2.2486 -1.2479 26 1 2.9716 -0.6319 0.8099 27 1 2.9708 1.0184 0.1431 28 1 1.8824 -3.1008 1.1218 29 1 3.3366 2.6571 -4.1987 30 1 2.1005 5.9201 -2.4912 31 1 2.9585 5.3614 -3.9472 32 1 -0.1264 6.9480 -3.1562 33 1 -2.0172 6.4077 -4.8954 34 1 -1.2571 4.2697 -6.2974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261237883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:23:12 Heat of formation + Delta-G solvation = 168.949015 kcal Electronic energy + Delta-G solvation = -23572.735124 eV Core-core repulsion = 19898.909994 eV Total energy + Delta-G solvation = -3673.825130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.69952 -41.17876 -38.80645 -35.83869 -34.73654 -34.39208 -33.45394 -31.98635 -31.10188 -30.01858 -27.57497 -26.78045 -25.78678 -23.44240 -22.26740 -21.21256 -21.14188 -19.25855 -18.08274 -17.81284 -17.33454 -16.84866 -16.51348 -16.08417 -15.38534 -14.95148 -14.41151 -14.22087 -14.05568 -13.61864 -13.52817 -13.28760 -13.14450 -12.93770 -12.91446 -12.33139 -12.07372 -11.64244 -11.37170 -11.27144 -11.13206 -10.73106 -10.55954 -10.48365 -10.38975 -9.92384 -9.59397 -9.41854 -9.37908 -8.98834 -8.74851 -8.24637 -6.70020 -4.10090 1.31351 1.77414 1.97831 2.61010 2.78122 3.04696 3.06708 3.14526 3.19993 3.60111 3.91489 4.00132 4.14767 4.29052 4.38414 4.47043 4.66661 4.77294 4.90324 4.91553 5.11584 5.32126 5.35255 5.44429 5.58537 5.63961 5.73689 5.88739 6.11717 6.25758 6.52551 6.53462 6.81960 7.29699 7.60099 7.68758 8.10061 8.40259 8.80490 8.81789 8.99879 9.55377 10.34019 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003756 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.580391 B = 7452.170492 C = 7728.836959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.259 3.741 3 C 0.214 3.786 4 N -0.410 5.410 5 C -0.313 4.313 6 H 0.118 0.882 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.505 3.495 14 O -0.565 6.565 15 C 0.001 3.999 16 C -0.138 4.138 17 C -0.085 4.085 18 C 0.227 3.773 19 N -0.377 5.377 20 C 0.056 3.944 21 C -0.274 4.274 22 C 0.045 3.955 23 N -0.282 5.282 24 O 0.111 5.889 25 N -0.335 5.335 26 H 0.136 0.864 27 H 0.092 0.908 28 H 0.279 0.721 29 H 0.177 0.823 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 17.446 -3.001 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.060 4.060 3 C 0.087 3.913 4 N -0.129 5.129 5 C -0.440 4.440 6 H 0.136 0.864 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.293 3.707 14 O -0.447 6.447 15 C -0.157 4.157 16 C -0.160 4.160 17 C -0.149 4.149 18 C 0.105 3.895 19 N -0.160 5.160 20 C -0.089 4.089 21 C -0.303 4.303 22 C -0.142 4.142 23 N -0.102 5.102 24 O 0.039 5.961 25 N -0.039 5.039 26 H 0.153 0.847 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.194 0.806 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.193 0.807 33 H 0.165 0.835 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.107 15.808 -2.216 15.963 hybrid contribution 0.139 -0.196 -0.354 0.428 sum 0.032 15.611 -2.570 15.821 Atomic orbital electron populations 1.80860 1.13551 1.12517 1.08576 1.28955 0.95025 0.89522 0.92462 1.19076 0.82168 0.99884 0.90133 1.43564 1.53079 1.09265 1.06969 1.19930 1.34527 0.81945 1.07611 0.86397 1.25435 0.95281 1.00243 0.96242 1.69957 1.22411 1.38296 1.18984 0.85770 0.79256 0.79705 0.79295 1.19818 1.20790 1.18885 1.16598 0.87084 0.82475 0.84498 1.90645 1.49536 1.75392 1.29170 1.24003 1.01256 0.98789 0.91673 1.22407 1.02380 0.89913 1.01349 1.24013 1.03738 0.98622 0.88539 1.19841 0.84889 0.90618 0.94144 1.48753 1.15810 1.23194 1.28276 1.22604 0.89388 0.96016 1.00942 1.21534 1.02689 1.03239 1.02858 1.23966 0.93773 0.96177 1.00328 1.77516 1.15593 1.14049 1.03067 1.84771 1.59105 1.21133 1.31100 1.74400 1.15137 0.91518 1.22846 0.84687 0.89085 0.91066 0.80558 0.86232 0.86314 0.80740 0.83521 0.80055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.34 18.54 42.15 0.78 -11.56 16 2 C 0.26 6.32 12.29 -20.76 -0.26 6.07 16 3 C 0.21 4.78 4.75 -6.83 -0.03 4.75 16 4 N -0.41 -10.25 2.60 -118.90 -0.31 -10.56 16 5 C -0.31 -8.17 9.41 -15.02 -0.14 -8.31 16 6 H 0.12 3.20 7.30 -52.49 -0.38 2.81 16 7 C 0.03 0.84 4.89 -17.44 -0.09 0.75 16 8 N -0.86 -21.61 9.45 55.50 0.52 -21.08 16 9 Si 0.93 19.19 29.61 -169.99 -5.03 14.16 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 13 C 0.51 12.53 7.58 -12.18 -0.09 12.44 16 14 O -0.56 -15.36 16.56 5.33 0.09 -15.27 16 15 C 0.00 0.02 6.74 -82.54 -0.56 -0.53 16 16 C -0.14 -2.33 10.93 -39.06 -0.43 -2.76 16 17 C -0.09 -1.19 6.91 -35.36 -0.24 -1.44 16 18 C 0.23 2.04 7.07 -5.20 -0.04 2.01 16 19 N -0.38 -4.34 3.67 -62.55 -0.23 -4.57 16 20 C 0.06 0.52 11.45 -17.22 -0.20 0.32 16 21 C -0.27 -2.72 10.80 -40.01 -0.43 -3.16 16 22 C 0.04 0.53 12.03 -17.37 -0.21 0.32 16 23 N -0.28 -4.07 12.41 30.62 0.38 -3.69 16 24 O 0.11 1.83 11.18 17.21 0.19 2.02 16 25 N -0.33 -6.58 7.75 33.29 0.26 -6.32 16 26 H 0.14 2.99 6.03 -51.93 -0.31 2.67 16 27 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16 28 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.18 2.78 8.06 -52.49 -0.42 2.35 16 30 H 0.12 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -34.61 314.02 -4.00 -38.61 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.68 Total: 3.07 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -2.71 Total: 10.46 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 1.41 Total: -57.77 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.28 Total: -13.25 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.61 -4.00 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.559 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds