Wall clock time and date at job start Fri Apr 10 2020 15:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46878 * 2 1 4 4 C 1.50696 * 109.47185 * 120.00366 * 2 1 3 5 5 H 1.08008 * 119.99849 * 120.00078 * 4 2 1 6 6 C 1.37875 * 120.00081 * 299.99304 * 4 2 1 7 7 N 1.31519 * 119.99968 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99947 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47379 * 89.99537 * 8 6 4 10 10 H 1.48501 * 109.46964 * 209.99450 * 8 6 4 11 11 H 1.48500 * 109.47132 * 329.99221 * 8 6 4 12 12 N 1.46501 * 109.46646 * 240.00399 * 2 1 3 13 13 C 1.34781 * 120.00240 * 85.00033 * 12 2 1 14 14 O 1.21286 * 119.99838 * 359.97438 * 13 12 2 15 15 C 1.50695 * 119.99989 * 179.97438 * 13 12 2 16 16 H 1.08993 * 109.47476 * 59.99849 * 15 13 12 17 17 C 1.52997 * 109.47196 * 299.99686 * 15 13 12 18 18 C 1.53006 * 109.46950 * 180.02562 * 15 13 12 19 19 S 1.81394 * 109.47158 * 185.00088 * 18 15 13 20 20 C 1.81398 * 103.00163 * 180.02562 * 19 18 15 21 21 C 1.50701 * 109.47126 * 179.97438 * 20 19 18 22 22 C 1.38235 * 119.99808 * 89.99763 * 21 20 19 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99892 * 359.90902 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97508 * 21 20 19 27 27 H 1.09005 * 109.46613 * 299.99744 * 1 2 3 28 28 H 1.08996 * 109.47126 * 59.99381 * 1 2 3 29 29 H 1.08995 * 109.46878 * 179.97438 * 1 2 3 30 30 H 0.96995 * 119.99690 * 180.02562 * 7 6 4 31 31 H 0.96995 * 119.99746 * 264.99698 * 12 2 1 32 32 H 1.09001 * 109.47232 * 300.00653 * 17 15 13 33 33 H 1.08997 * 109.47231 * 60.00114 * 17 15 13 34 34 H 1.09000 * 109.47471 * 180.02562 * 17 15 13 35 35 H 1.09001 * 109.47149 * 64.99384 * 18 15 13 36 36 H 1.09006 * 109.47002 * 304.99531 * 18 15 13 37 37 H 1.08993 * 109.47581 * 59.99307 * 20 19 18 38 38 H 1.09001 * 109.46610 * 299.99232 * 20 19 18 39 39 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 40 40 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99633 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8598 3.5564 8 14 0.6251 1.2790 2.6542 9 1 -0.8026 0.8728 2.6998 10 1 0.9763 1.9949 3.9069 11 1 0.8474 2.1766 1.4922 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0181 -2.3573 14 8 1.8581 1.1586 -2.4117 15 6 2.6497 -0.7284 -3.5876 16 1 1.9776 -1.5506 -3.8327 17 6 4.0524 -1.2783 -3.3216 18 6 2.7016 0.2550 -4.7587 19 16 3.1646 -0.6312 -6.2722 20 6 3.1736 0.6797 -7.5260 21 6 3.5473 0.0934 -8.8631 22 6 2.5630 -0.3875 -9.7062 23 6 2.9058 -0.9248 -10.9330 24 6 4.2328 -0.9825 -11.3158 25 6 5.2169 -0.5012 -10.4728 26 6 4.8741 0.0370 -9.2465 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9029 -0.5286 4.4374 31 1 2.2489 -1.6317 -1.1527 32 1 4.7247 -0.4560 -3.0765 33 1 4.0159 -1.9787 -2.4872 34 1 4.4163 -1.7917 -4.2116 35 1 3.4401 1.0292 -4.5505 36 1 1.7218 0.7138 -4.8916 37 1 3.9005 1.4430 -7.2485 38 1 2.1822 1.1282 -7.5898 39 1 1.5267 -0.3474 -9.4048 40 1 2.1368 -1.3009 -11.5915 41 1 4.5005 -1.4027 -12.2740 42 1 6.2536 -0.5460 -10.7721 43 1 5.6431 0.4127 -8.5878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161099708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:28:35 Heat of formation + Delta-G solvation = -27.102509 kcal Electronic energy + Delta-G solvation = -21721.526073 eV Core-core repulsion = 18471.265538 eV Total energy + Delta-G solvation = -3250.260535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50678 -39.36861 -35.24531 -34.26779 -33.15624 -32.34963 -31.21162 -29.85624 -27.76674 -26.82387 -25.23179 -23.67975 -22.89615 -21.75544 -20.62453 -19.44570 -17.41993 -17.21109 -16.35542 -16.00931 -15.63789 -15.50076 -15.46248 -15.16137 -14.65749 -13.95857 -13.84019 -13.68301 -13.46150 -13.19048 -13.10024 -12.97165 -12.72568 -12.33112 -12.22250 -12.09684 -11.78076 -11.54016 -11.39586 -11.33578 -11.23684 -11.06211 -10.82439 -10.20355 -10.15560 -9.71643 -9.24879 -9.23579 -9.12976 -8.95689 -8.77174 -8.18222 -7.76111 -6.22210 -4.24755 0.72775 1.09483 1.74558 2.44788 3.18092 3.22551 3.34142 3.38443 3.54658 3.97926 4.30293 4.31632 4.45281 4.67165 4.69097 4.80996 4.86625 4.89688 5.12557 5.15450 5.16095 5.24241 5.30712 5.46302 5.60069 5.65404 5.69541 5.72187 5.87606 6.03412 6.12744 6.19369 6.25199 6.25757 6.29522 6.36488 6.54458 6.66137 6.83560 7.17266 7.26706 7.50173 8.12649 8.50657 8.74166 8.89737 9.38558 10.89923 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.043010 B = 0.002245 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.859498 B =12468.276045 C =12716.143741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.512 3.488 14 O -0.558 6.558 15 C -0.096 4.096 16 H 0.101 0.899 17 C -0.145 4.145 18 C -0.065 4.065 19 S -0.248 6.248 20 C -0.051 4.051 21 C -0.070 4.070 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.101 4.101 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.267 0.733 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -0.538 -27.244 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.295 3.705 14 O -0.438 6.438 15 C -0.118 4.118 16 H 0.119 0.881 17 C -0.203 4.203 18 C -0.213 4.213 19 S -0.018 6.018 20 C -0.198 4.198 21 C -0.071 4.071 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.121 4.121 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.497 -0.767 -27.115 27.351 hybrid contribution -0.826 1.554 0.516 1.834 sum 2.672 0.787 -26.599 26.745 Atomic orbital electron populations 1.22451 0.99319 1.00871 0.99283 1.19111 0.90129 0.94671 0.82835 0.93415 1.21034 1.33273 1.14419 0.88511 0.90166 1.24840 0.95513 0.96714 0.95546 1.69869 1.44893 1.40075 0.98037 0.86869 0.80538 0.83608 0.77414 1.20311 1.22150 1.18724 1.46168 1.64782 1.13882 1.09666 1.20287 0.78220 0.87321 0.84648 1.90648 1.51700 1.16151 1.85280 1.21041 0.99991 0.98359 0.92421 0.88104 1.21836 0.94140 1.01651 1.02652 1.23231 1.05491 0.99848 0.92766 1.86936 1.92251 1.18602 1.03977 1.22293 1.05274 0.98682 0.93543 1.19248 0.93883 1.00049 0.93950 1.21076 0.99283 0.97811 0.93974 1.21146 0.96472 0.99754 0.96536 1.21196 0.93135 0.99649 0.99728 1.21146 0.99526 0.98898 0.94325 1.21074 0.95442 0.99069 0.96518 0.93452 0.94597 0.92785 0.92282 0.77036 0.91904 0.91452 0.90907 0.89378 0.89244 0.89099 0.89147 0.85781 0.85906 0.86066 0.85893 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.24 5.61 2.15 -69.08 -0.15 5.46 16 3 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 4 C -0.53 -14.38 9.31 -34.44 -0.32 -14.70 16 5 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.70 -13.66 4.96 -54.93 -0.27 -13.93 16 13 C 0.51 9.42 7.12 -10.99 -0.08 9.34 16 14 O -0.56 -12.24 15.58 5.55 0.09 -12.15 16 15 C -0.10 -1.31 2.72 -91.77 -0.25 -1.56 16 16 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 17 C -0.15 -1.79 8.91 37.16 0.33 -1.46 16 18 C -0.06 -0.83 4.73 37.16 0.18 -0.66 16 19 S -0.25 -2.80 20.53 -107.50 -2.21 -5.00 16 20 C -0.05 -0.47 6.07 36.01 0.22 -0.25 16 21 C -0.07 -0.65 5.14 -104.63 -0.54 -1.18 16 22 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.10 -0.87 9.70 -39.59 -0.38 -1.26 16 27 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.40 6.85 7.96 -40.82 -0.32 6.52 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 34 H 0.07 0.82 7.13 -51.93 -0.37 0.45 16 35 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.09 1.20 7.96 -51.92 -0.41 0.79 16 37 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.09 0.78 8.09 -51.92 -0.42 0.36 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -31.46 364.00 -9.29 -40.76 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.68 Total: 5.41 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.33 Total: -12.62 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.50 Total: -39.51 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.21 Total: -5.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.46 -9.29 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161099708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.655 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds