Wall clock time and date at job start Fri Apr 10 2020 15:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47243 * 2 1 4 4 C 1.46500 * 120.00260 * 274.15389 * 3 2 1 5 5 C 1.53001 * 109.47158 * 270.00070 * 4 3 2 6 6 C 1.53002 * 109.46952 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46632 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99759 * 94.14841 * 3 2 1 9 9 O 1.21604 * 119.99686 * 175.22880 * 8 3 2 10 10 C 1.47426 * 119.99899 * 355.23388 * 8 3 2 11 11 C 1.39678 * 120.21402 * 60.44963 * 10 8 3 12 12 C 1.37806 * 119.93598 * 179.97438 * 11 10 8 13 13 C 1.38659 * 120.38262 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43866 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04841 * 359.97438 * 14 13 12 16 16 S 1.76204 * 120.18894 * 180.02562 * 15 14 13 17 17 C 1.76197 * 99.99861 * 351.92402 * 16 15 14 18 18 H 1.08003 * 120.00598 * 4.85835 * 17 16 15 19 19 C 1.38804 * 120.00312 * 184.86300 * 17 16 15 20 20 N 1.31562 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00418 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47327 * 119.99930 * 21 19 17 24 24 H 1.48508 * 109.47102 * 239.99572 * 21 19 17 25 25 H 1.08998 * 109.47045 * 59.99614 * 1 2 3 26 26 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46671 * 300.00010 * 1 2 3 28 28 H 1.09001 * 109.46641 * 240.00498 * 2 1 3 29 29 H 1.08998 * 109.47045 * 120.00386 * 2 1 3 30 30 H 1.09008 * 109.47208 * 29.99731 * 4 3 2 31 31 H 1.08995 * 109.47367 * 149.99761 * 4 3 2 32 32 H 1.08995 * 109.46557 * 300.00050 * 5 4 3 33 33 H 1.09003 * 109.47142 * 59.99920 * 5 4 3 34 34 H 1.09006 * 109.46750 * 299.99505 * 6 5 4 35 35 H 1.08995 * 109.47529 * 59.99718 * 6 5 4 36 36 H 0.96696 * 113.99855 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03549 * 0.27733 * 11 10 8 38 38 H 1.08005 * 119.80935 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.78091 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.97322 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.1025 -1.2654 5 6 3.5873 1.8740 -1.8104 6 6 3.7520 2.6278 -3.1316 7 8 5.0699 2.4139 -3.6408 8 6 2.3227 1.9884 1.1642 9 8 2.8095 3.1027 1.1597 10 6 2.0654 1.3015 2.4430 11 6 2.6893 0.0840 2.7249 12 6 2.4450 -0.5529 3.9223 13 6 1.5817 0.0075 4.8514 14 6 0.9565 1.2084 4.5888 15 6 1.1900 1.8668 3.3858 16 16 0.3936 3.4017 3.0467 17 6 -0.7166 3.4786 4.4127 18 1 -0.6778 2.7231 5.1835 19 6 -1.6413 4.5103 4.4983 20 7 -1.6883 5.4310 3.5597 21 14 -2.8179 4.5923 5.9469 22 1 -2.5623 3.4476 6.8576 23 1 -2.6104 5.8660 6.6817 24 1 -4.2168 4.5283 5.4525 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4446 1.7363 -1.9859 31 1 2.0192 3.1681 -1.0982 32 1 4.3186 2.2402 -1.0899 33 1 3.7440 0.8083 -1.9776 34 1 3.0205 2.2619 -3.8522 35 1 3.5953 3.6934 -2.9640 36 1 5.2457 2.8637 -4.4786 37 1 3.3662 -0.3554 2.0073 38 1 2.9283 -1.4944 4.1380 39 1 1.3976 -0.4998 5.7870 40 1 0.2858 1.6383 5.3180 41 1 -2.3342 6.1521 3.6197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160479708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:32:36 Heat of formation + Delta-G solvation = -85.830622 kcal Electronic energy + Delta-G solvation = -23324.711868 eV Core-core repulsion = 19908.760118 eV Total energy + Delta-G solvation = -3415.951750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33692 -39.16380 -38.05512 -37.03781 -34.80629 -33.84907 -32.01437 -31.84595 -30.84888 -27.90999 -26.83954 -24.84463 -23.85788 -23.38966 -22.56732 -20.78822 -19.61565 -18.46982 -18.21576 -17.75238 -17.37851 -17.08356 -16.46958 -16.44001 -15.95984 -15.26307 -15.17889 -14.93431 -14.65753 -14.56108 -14.33329 -14.14134 -13.71589 -13.60536 -13.35240 -13.13862 -13.01897 -12.90856 -12.84636 -12.54545 -12.13849 -12.07983 -12.01344 -11.96101 -11.49632 -11.41419 -11.01025 -10.88589 -10.45441 -10.38572 -9.86977 -9.60630 -8.53584 -8.50002 -6.29919 0.20518 0.49295 1.24910 1.35359 1.44841 1.58164 1.66227 2.02784 2.17784 2.80051 2.93383 3.15634 3.37237 3.59585 3.94727 4.03327 4.07985 4.22094 4.24642 4.29406 4.39435 4.44869 4.57648 4.59834 4.61022 4.63813 4.69734 4.82449 4.88381 4.96747 5.06936 5.10965 5.18632 5.35112 5.38727 5.46679 5.53196 5.65466 5.66160 6.06992 6.14067 6.35964 6.89979 6.91776 7.17618 8.57948 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004320 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.565492 B = 6479.607012 C = 7544.297396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.603 5.603 4 C 0.119 3.881 5 C -0.125 4.125 6 C 0.081 3.919 7 O -0.595 6.595 8 C 0.564 3.436 9 O -0.571 6.571 10 C -0.157 4.157 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.078 4.078 14 C -0.166 4.166 15 C -0.067 4.067 16 S -0.018 6.018 17 C -0.570 4.570 18 H 0.100 0.900 19 C 0.022 3.978 20 N -0.906 5.906 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.272 1.272 24 H -0.269 1.269 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.022 0.978 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.399 0.601 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -15.461 -9.757 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.334 5.334 4 C -0.004 4.004 5 C -0.164 4.164 6 C 0.003 3.997 7 O -0.404 6.404 8 C 0.353 3.647 9 O -0.451 6.451 10 C -0.169 4.169 11 C -0.090 4.090 12 C -0.165 4.165 13 C -0.098 4.098 14 C -0.191 4.191 15 C -0.183 4.183 16 S 0.237 5.763 17 C -0.717 4.717 18 H 0.118 0.882 19 C -0.183 4.183 20 N -0.541 5.541 21 Si 0.820 3.180 22 H -0.178 1.178 23 H -0.197 1.197 24 H -0.194 1.194 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.042 0.958 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.249 0.751 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.469 -14.020 -10.247 18.531 hybrid contribution -1.066 0.533 1.302 1.765 sum 5.402 -13.487 -8.946 17.062 Atomic orbital electron populations 1.22136 0.96072 1.03102 1.01158 1.22063 0.94562 0.80638 1.05437 1.47940 1.64786 1.15702 1.05009 1.21361 0.97103 0.97145 0.84770 1.21749 0.96427 1.01953 0.96236 1.22048 0.84344 0.98632 0.94689 1.86415 1.32580 1.76801 1.44609 1.18550 0.76601 0.84691 0.84882 1.90751 1.45077 1.21279 1.87953 1.19429 1.04314 0.98542 0.94635 1.21278 0.97749 0.91501 0.98433 1.21312 1.00153 1.01847 0.93202 1.21495 0.94677 0.93444 1.00188 1.21447 1.03313 0.97933 0.96381 1.22633 0.99255 0.99498 0.96959 1.84099 1.39939 1.17384 1.34858 1.23790 1.21360 1.16055 1.10518 0.88239 1.26184 0.98393 0.93624 1.00132 1.70135 1.35976 1.13230 1.34733 0.84906 0.77163 0.78966 0.77014 1.17845 1.19714 1.19369 0.92236 0.89036 0.95821 0.86869 0.88727 0.87086 0.92749 0.94208 0.89777 0.90692 0.93875 0.75120 0.82968 0.81568 0.83103 0.86183 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.09 2.06 5.95 86.38 0.51 2.58 16 3 N -0.60 -18.45 2.47 -825.67 -2.04 -20.50 16 4 C 0.12 3.15 5.39 86.38 0.47 3.62 16 5 C -0.12 -2.98 5.91 30.60 0.18 -2.80 16 6 C 0.08 1.56 7.05 71.98 0.51 2.07 16 7 O -0.60 -11.87 13.66 -148.98 -2.04 -13.90 16 8 C 0.56 23.14 6.33 86.66 0.55 23.69 16 9 O -0.57 -28.73 16.06 -4.04 -0.06 -28.80 16 10 C -0.16 -6.22 4.97 -19.95 -0.10 -6.32 16 11 C -0.07 -2.01 7.59 22.52 0.17 -1.84 16 12 C -0.14 -3.56 10.02 22.27 0.22 -3.34 16 13 C -0.08 -2.32 10.03 22.29 0.22 -2.10 16 14 C -0.17 -6.82 9.25 22.40 0.21 -6.62 16 15 C -0.07 -3.13 6.14 23.04 0.14 -2.99 16 16 S -0.02 -1.03 20.18 -56.49 -1.14 -2.17 16 17 C -0.57 -32.82 9.08 67.96 0.62 -32.20 16 18 H 0.10 5.38 4.86 -2.91 -0.01 5.37 16 19 C 0.02 1.26 5.49 84.87 0.47 1.72 16 20 N -0.91 -54.70 13.22 21.65 0.29 -54.41 16 21 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 22 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 1.61 8.10 -2.39 -0.02 1.59 16 29 H 0.09 2.01 4.31 -2.39 -0.01 2.00 16 30 H 0.11 2.14 8.07 -2.38 -0.02 2.12 16 31 H 0.05 1.81 7.49 -2.39 -0.02 1.79 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.40 3.89 9.12 -74.06 -0.68 3.21 16 37 H 0.15 3.30 7.36 -2.91 -0.02 3.28 16 38 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.12 5.32 4.98 -2.91 -0.01 5.30 16 41 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.81 355.61 2.31 -79.50 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.38 Total: 22.78 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.90 Total: -27.76 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.76 Total: -74.91 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -2.10 Total: -42.70 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -1.14 Total: -2.17 kcal Total: -81.81 2.31 -79.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160479708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.326 kcal (2) G-P(sol) polarization free energy of solvation -81.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds