Wall clock time and date at job start Fri Apr 10 2020 15:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00402 * 2 1 4 4 N 1.46504 * 109.46986 * 125.00077 * 3 2 1 5 5 C 1.46501 * 119.99877 * 90.00336 * 4 3 2 6 6 C 1.50699 * 109.47236 * 269.99646 * 5 4 3 7 7 C 1.33347 * 125.18409 * 89.99861 * 6 5 4 8 8 C 1.38475 * 114.92849 * 180.02562 * 7 6 5 9 9 C 1.33503 * 114.88382 * 0.02562 * 8 7 6 10 10 Cl 1.73595 * 125.20870 * 179.97438 * 9 8 7 11 11 S 1.75877 * 125.19207 * 270.00136 * 6 5 4 12 12 C 1.34780 * 119.99841 * 270.00266 * 4 3 2 13 13 O 1.21283 * 119.99485 * 179.97438 * 12 4 3 14 14 C 1.50701 * 120.00295 * 0.02562 * 12 4 3 15 15 C 1.52998 * 109.46923 * 179.97438 * 14 12 4 16 16 C 1.50701 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00137 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00113 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99851 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47332 * 89.99421 * 20 18 16 22 22 H 1.48502 * 109.47187 * 209.99937 * 20 18 16 23 23 H 1.48510 * 109.46944 * 329.99466 * 20 18 16 24 24 H 1.08002 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00089 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99804 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46868 * 5.00472 * 3 2 1 28 28 H 1.08994 * 109.47679 * 245.00235 * 3 2 1 29 29 H 1.09006 * 109.46855 * 149.99786 * 5 4 3 30 30 H 1.08997 * 109.46849 * 30.00096 * 5 4 3 31 31 H 1.07996 * 122.54060 * 0.02599 * 7 6 5 32 32 H 1.08005 * 122.55896 * 179.73668 * 8 7 6 33 33 H 1.08997 * 109.46946 * 300.00310 * 14 12 4 34 34 H 1.08997 * 109.46563 * 60.00285 * 14 12 4 35 35 H 1.08994 * 109.47299 * 299.99875 * 15 14 12 36 36 H 1.09002 * 109.46774 * 60.00506 * 15 14 12 37 37 H 0.96996 * 119.99682 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3590 0.8255 0.9694 6 6 4.3926 -0.6440 1.3018 7 6 4.1968 -1.6337 0.4298 8 6 4.2748 -2.9080 0.9660 9 6 4.5336 -2.9518 2.2750 10 17 4.6875 -4.4019 3.2169 11 16 4.6958 -1.3153 2.8989 12 6 2.5937 1.8221 2.3214 13 8 3.3638 1.8437 3.2582 14 6 1.1892 2.3424 2.4883 15 6 0.9955 2.8363 3.9233 16 6 -0.4087 3.3572 4.0900 17 1 -1.0944 3.3383 3.2557 18 6 -0.8180 3.8589 5.3073 19 7 0.0170 3.8825 6.3231 20 14 -2.5588 4.5039 5.5142 21 1 -3.4479 3.3978 5.9514 22 1 -2.5694 5.5811 6.5363 23 1 -3.0431 5.0458 4.2190 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0897 28 1 2.6213 1.4026 -0.9313 29 1 5.0285 1.3649 1.6394 30 1 4.6809 0.9723 -0.0616 31 1 3.9930 -1.4550 -0.6156 32 1 4.1323 -3.7985 0.3716 33 1 1.0222 3.1662 1.7944 34 1 0.4785 1.5425 2.2807 35 1 1.1625 2.0123 4.6169 36 1 1.7064 3.6361 4.1313 37 1 -0.2710 4.2351 7.1796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291170708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:39:55 Heat of formation + Delta-G solvation = 7.339748 kcal Electronic energy + Delta-G solvation = -21128.490745 eV Core-core repulsion = 17830.999184 eV Total energy + Delta-G solvation = -3297.491561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.064 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75150 -38.07444 -36.77180 -35.94183 -33.70688 -33.11493 -31.26820 -30.19583 -26.83233 -26.23821 -24.88281 -23.31632 -21.36169 -20.16647 -19.69241 -18.49487 -17.71573 -17.02968 -15.97878 -15.81981 -15.69380 -15.29411 -14.44893 -14.40459 -13.88456 -13.73067 -13.45150 -13.22009 -13.17425 -13.04686 -12.26112 -12.18165 -12.12646 -11.78130 -11.55447 -11.32028 -11.08204 -11.04768 -10.92953 -10.66135 -10.58436 -9.97863 -9.64407 -9.54313 -9.17621 -9.06964 -8.73056 -8.59719 -8.51341 -8.31311 -5.95502 -3.99792 0.67488 1.06770 1.82604 2.14127 2.18315 2.44478 3.15653 3.33480 3.38811 3.40974 3.44285 4.47340 4.63429 4.87303 4.89966 5.05053 5.12547 5.27790 5.27838 5.39600 5.43158 5.58704 5.64933 5.78983 5.91342 5.94362 6.18926 6.21249 6.25398 6.57850 6.63458 6.69331 6.88904 7.63585 7.74609 7.86712 8.07432 8.38457 8.67191 9.08286 9.63701 11.15444 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.003610 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.318630 B = 7754.517280 C = 8432.817742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.618 5.618 5 C 0.182 3.818 6 C -0.184 4.184 7 C -0.130 4.130 8 C -0.124 4.124 9 C -0.162 4.162 10 Cl -0.022 7.022 11 S 0.201 5.799 12 C 0.514 3.486 13 O -0.526 6.526 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -12.688 -16.381 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.017 3.983 4 N -0.352 5.352 5 C 0.057 3.943 6 C -0.304 4.304 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.307 4.307 10 Cl 0.006 6.994 11 S 0.465 5.535 12 C 0.304 3.696 13 O -0.400 6.400 14 C -0.167 4.167 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.839 -12.093 -14.120 21.034 hybrid contribution -1.369 -0.710 -1.155 1.927 sum 8.470 -12.804 -15.275 21.657 Atomic orbital electron populations 1.23933 0.95866 1.02257 0.98928 1.23404 0.96354 0.99092 1.01278 1.20700 0.92503 0.96089 0.89029 1.48275 1.11710 1.63101 1.12145 1.19807 0.85542 0.86435 1.02481 1.25186 1.08050 1.00751 0.96436 1.19865 1.04678 0.90557 1.00991 1.20102 1.03478 0.99148 0.92920 1.25504 1.15063 0.93629 0.96479 1.98357 1.96492 1.33063 1.71462 1.85145 1.67441 0.92317 1.08623 1.21679 0.91305 0.75832 0.80766 1.90664 1.55591 1.54953 1.38796 1.21916 0.90144 1.00658 1.04022 1.18897 0.96521 0.96906 0.87632 1.21200 0.97497 1.41198 0.96541 0.92683 1.25010 0.97274 0.95957 0.96040 1.69997 1.34918 1.46028 1.01834 0.86616 0.84975 0.78636 0.77866 1.20678 1.21228 1.19891 0.88015 0.88504 0.87131 0.89193 0.89962 0.88663 0.88672 0.83772 0.83854 0.90385 0.90099 0.95878 0.95888 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 13.86 29.02 0.40 -1.45 16 2 C -0.18 -1.96 9.74 -36.02 -0.35 -2.31 16 3 C 0.14 1.47 5.69 -5.19 -0.03 1.44 16 4 N -0.62 -8.46 2.44 -176.43 -0.43 -8.89 16 5 C 0.18 2.12 5.94 -5.19 -0.03 2.09 16 6 C -0.18 -2.20 6.09 -36.02 -0.22 -2.42 16 7 C -0.13 -1.29 8.32 -41.20 -0.34 -1.63 16 8 C -0.12 -1.29 10.13 -41.15 -0.42 -1.71 16 9 C -0.16 -1.98 7.10 29.08 0.21 -1.77 16 10 Cl -0.02 -0.25 29.29 -51.86 -1.52 -1.77 16 11 S 0.20 2.79 23.33 -107.50 -2.51 0.28 16 12 C 0.51 9.66 7.67 -10.98 -0.08 9.58 16 13 O -0.53 -11.82 15.56 5.55 0.09 -11.73 16 14 C -0.13 -2.58 4.19 -27.88 -0.12 -2.70 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.10 1.08 7.84 -52.49 -0.41 0.67 16 25 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.11 1.18 6.13 -52.49 -0.32 0.86 16 27 H 0.09 0.97 6.09 -51.93 -0.32 0.65 16 28 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 29 H 0.10 1.25 7.42 -51.93 -0.39 0.87 16 30 H 0.10 0.77 7.89 -51.93 -0.41 0.36 16 31 H 0.14 1.08 7.98 -52.49 -0.42 0.66 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.08 1.43 7.40 -51.93 -0.38 1.05 16 34 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -33.10 346.87 -9.62 -42.72 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.68 Total: -2.27 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.51 Total: -13.52 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.31 Total: -35.53 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.51 Total: 0.28 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.10 -9.62 -42.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291170708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.057 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds