Wall clock time and date at job start Fri Apr 10 2020 15:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99849 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00207 * 3 2 1 5 5 H 1.48502 * 109.47150 * 30.00295 * 3 2 1 6 6 H 1.48502 * 109.47386 * 150.00143 * 3 2 1 7 7 C 1.37875 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99963 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.53593 * 60.09975 * 9 7 2 11 11 C 1.53123 * 109.50478 * 300.00322 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.37233 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 C 1.50690 * 109.47377 * 65.79142 * 15 14 13 17 17 C 1.38435 * 120.01541 * 269.72577 * 16 15 14 18 18 F 1.35103 * 119.99971 * 0.02562 * 17 16 15 19 19 C 1.38448 * 119.98840 * 179.72428 * 17 16 15 20 20 C 1.38329 * 120.01279 * 0.57210 * 19 17 16 21 21 Cl 1.73598 * 119.98617 * 179.72558 * 20 19 17 22 22 C 1.38327 * 120.02277 * 359.70241 * 20 19 17 23 23 C 1.38428 * 120.01532 * 90.00146 * 16 15 14 24 24 F 1.35102 * 120.00345 * 359.95311 * 23 16 15 25 25 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 26 26 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.52319 * 302.31026 * 11 9 7 28 28 H 1.08995 * 109.52318 * 62.43708 * 11 9 7 29 29 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 30 30 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 31 31 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 32 32 H 1.09002 * 109.45193 * 60.88225 * 13 12 11 33 33 H 1.09007 * 109.47226 * 185.79563 * 15 14 13 34 34 H 1.09007 * 109.47336 * 305.79107 * 15 14 13 35 35 H 1.08005 * 119.99181 * 180.29435 * 19 17 16 36 36 H 1.07997 * 119.99254 * 180.02562 * 22 20 19 37 37 H 1.09006 * 109.46097 * 178.23945 * 25 14 13 38 38 H 1.08996 * 109.46972 * 58.27256 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6251 -2.5585 -0.8908 11 6 0.3709 -2.5813 1.2497 12 6 -0.3459 -3.9341 1.2732 13 6 0.6954 -5.0568 1.2400 14 7 1.5112 -4.9347 0.0251 15 6 2.4286 -6.0741 -0.1097 16 6 1.6342 -7.3354 -0.3302 17 6 1.2273 -8.0958 0.7528 18 9 1.5421 -7.7067 2.0077 19 6 0.4926 -9.2515 0.5498 20 6 0.1751 -9.6529 -0.7353 21 17 -0.7401 -11.1060 -0.9893 22 6 0.5863 -8.8965 -1.8181 23 6 1.3158 -7.7374 -1.6160 24 9 1.7165 -6.9983 -2.6736 25 6 2.2449 -3.6629 0.0039 26 1 -0.4850 0.8400 0.0004 27 1 0.9923 -2.4828 2.1398 28 1 -0.3663 -1.7787 1.2296 29 1 -0.9413 -4.0147 2.1827 30 1 -0.9971 -4.0161 0.4030 31 1 0.1887 -6.0220 1.2416 32 1 1.3375 -4.9825 2.1176 33 1 3.0911 -5.9086 -0.9594 34 1 3.0218 -6.1725 0.7996 35 1 0.1711 -9.8422 1.3949 36 1 0.3378 -9.2101 -2.8212 37 1 2.8637 -3.6154 -0.8922 38 1 2.8797 -3.5949 0.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139050708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:44:08 Heat of formation + Delta-G solvation = -90.164019 kcal Electronic energy + Delta-G solvation = -24252.889471 eV Core-core repulsion = 20370.017965 eV Total energy + Delta-G solvation = -3882.871506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.20791 -50.08338 -40.48729 -39.51454 -37.62825 -35.82213 -33.99164 -32.03559 -31.60153 -31.46361 -27.33673 -26.94817 -24.22965 -24.11228 -23.34335 -22.27601 -20.41928 -19.39199 -18.61637 -18.46846 -17.53574 -17.21200 -16.83217 -16.64078 -16.44486 -16.07379 -15.90419 -15.77968 -15.35910 -15.00102 -14.60576 -14.36826 -14.19551 -14.14697 -13.96843 -13.55461 -13.23881 -12.86564 -12.80292 -12.68793 -12.55735 -12.36113 -12.18874 -12.17245 -11.86416 -11.74272 -11.41180 -10.93803 -10.68784 -10.38887 -9.96309 -9.90808 -9.23973 -8.07861 -6.22114 -0.37063 -0.22955 0.78955 1.41882 1.42257 1.52404 2.02736 2.43170 2.81063 3.05731 3.15482 3.19235 3.40724 3.50364 3.79080 4.05852 4.11540 4.15764 4.30885 4.33872 4.54232 4.56968 4.62655 4.68374 4.70545 4.74145 4.85122 4.90059 4.94244 5.03990 5.13919 5.34975 5.46638 5.49210 5.63150 5.91088 6.08216 6.17207 6.19557 6.42790 6.89957 7.45747 8.96878 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.003185 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.709935 B = 8789.553061 C = 9055.324827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.054 3.946 10 H -0.003 1.003 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.541 5.541 15 C 0.092 3.908 16 C -0.149 4.149 17 C 0.139 3.861 18 F -0.127 7.127 19 C -0.146 4.146 20 C 0.018 3.982 21 Cl -0.031 7.031 22 C -0.149 4.149 23 C 0.150 3.850 24 F -0.127 7.127 25 C 0.082 3.918 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.060 0.940 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -23.047 0.080 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.015 0.985 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.265 5.265 15 C -0.035 4.035 16 C -0.152 4.152 17 C 0.119 3.881 18 F -0.105 7.105 19 C -0.166 4.166 20 C -0.009 4.009 21 Cl -0.002 7.002 22 C -0.168 4.168 23 C 0.130 3.870 24 F -0.105 7.105 25 C -0.045 4.045 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.079 0.921 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.001 -23.007 -0.329 23.010 hybrid contribution 0.916 1.429 0.604 1.802 sum 0.916 -21.578 0.274 21.599 Atomic orbital electron populations 1.70035 1.07179 1.27076 1.51150 1.25722 0.95666 1.02336 0.94759 0.85607 0.78723 0.79410 0.78202 1.20184 1.20899 1.19281 1.21503 0.93029 0.92053 1.50877 0.92917 1.18568 0.92918 0.91208 0.93742 0.98527 1.21462 0.99161 0.96054 0.97469 1.21606 0.97417 0.94890 1.00859 1.22067 0.95206 0.98698 0.89879 1.62000 1.24159 1.01560 1.38819 1.20866 0.93248 0.87000 1.02409 1.19928 1.04419 0.98713 0.92122 1.16978 0.98178 0.94208 0.78768 1.91551 1.90830 1.90647 1.37469 1.21157 1.00607 0.96576 0.98235 1.20201 0.97038 0.90744 0.92954 1.98414 1.71536 1.33335 1.96867 1.21183 1.00223 0.93788 1.01606 1.16990 0.97016 0.90436 0.82585 1.91554 1.88355 1.75991 1.54639 1.22015 0.95450 0.88190 0.98846 0.93061 0.95745 0.92207 0.91172 0.93235 0.90680 0.95336 0.89012 0.92813 0.80735 0.80985 0.92108 0.96169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.35 21.45 0.24 -53.38 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -30.02 8.56 25.60 0.22 -29.80 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.05 2.82 2.27 -11.49 -0.03 2.79 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 11 C -0.10 -5.04 5.02 30.68 0.15 -4.88 16 12 C -0.11 -4.36 6.11 30.69 0.19 -4.18 16 13 C 0.07 2.43 4.53 86.37 0.39 2.82 16 14 N -0.54 -19.96 4.65 -900.66 -4.19 -24.15 16 15 C 0.09 2.73 4.79 85.55 0.41 3.14 16 16 C -0.15 -3.78 4.89 -19.78 -0.10 -3.88 16 17 C 0.14 3.07 5.89 22.37 0.13 3.20 16 18 F -0.13 -3.03 15.07 44.97 0.68 -2.35 16 19 C -0.15 -2.48 9.81 22.34 0.22 -2.26 16 20 C 0.02 0.29 6.32 22.31 0.14 0.44 16 21 Cl -0.03 -0.42 28.95 -2.72 -0.08 -0.50 16 22 C -0.15 -2.68 9.81 22.34 0.22 -2.46 16 23 C 0.15 3.56 7.24 22.36 0.16 3.72 16 24 F -0.13 -3.47 16.48 44.97 0.74 -2.73 16 25 C 0.08 3.53 4.68 86.33 0.40 3.93 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 3.29 6.15 -2.39 -0.01 3.28 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.33 5.43 -2.39 -0.01 2.32 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 2.66 7.49 -2.38 -0.02 2.65 16 34 H 0.05 1.53 7.61 -2.38 -0.02 1.51 16 35 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.06 2.57 8.02 -2.38 -0.02 2.55 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -61.29 328.27 3.47 -57.83 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.08 Total: 5.40 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 2.96 Total: -26.19 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.94 Total: -77.53 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 1.42 Total: -5.08 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -61.29 3.47 -57.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139050708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.338 kcal (2) G-P(sol) polarization free energy of solvation -61.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds