Wall clock time and date at job start Fri Apr 10 2020 15:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48500 * 109.47443 * 270.00183 * 3 2 1 5 5 H 1.48500 * 109.47222 * 30.00317 * 3 2 1 6 6 H 1.48502 * 109.47255 * 150.00127 * 3 2 1 7 7 C 1.37868 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.94201 * 270.02544 * 10 9 7 12 12 C 1.38301 * 120.24579 * 179.97438 * 11 10 9 13 13 C 1.38043 * 120.11587 * 359.78305 * 12 11 10 14 14 C 1.39312 * 119.88110 * 0.44847 * 13 12 11 15 15 C 1.48401 * 120.12223 * 179.81451 * 14 13 12 16 16 C 1.39425 * 120.06302 * 179.72452 * 15 14 13 17 17 C 1.38075 * 120.12049 * 180.25465 * 16 15 14 18 18 C 1.38121 * 120.25117 * 359.43963 * 17 16 15 19 19 C 1.39387 * 120.11945 * 0.55636 * 18 17 16 20 20 C 1.48412 * 120.06204 * 179.74947 * 19 18 17 21 21 C 1.39757 * 120.53589 * 359.69416 * 20 19 18 22 22 C 1.38410 * 118.31352 * 179.78225 * 21 20 19 23 23 C 1.38311 * 119.28193 * 0.47774 * 22 21 20 24 24 N 1.31887 * 121.02531 * 359.76508 * 23 22 21 25 25 C 1.31746 * 121.85446 * 359.97438 * 24 23 22 26 26 C 1.39127 * 120.06166 * 359.69421 * 15 14 13 27 27 C 1.37998 * 119.94113 * 90.00104 * 10 9 7 28 28 H 0.96997 * 120.00222 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.46465 * 60.00116 * 9 7 2 30 30 H 1.09001 * 109.46873 * 300.00839 * 9 7 2 31 31 H 1.08000 * 119.87743 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.93933 * 180.02562 * 12 11 10 33 33 H 1.08006 * 120.05910 * 180.25901 * 13 12 11 34 34 H 1.08002 * 119.93557 * 359.96770 * 16 15 14 35 35 H 1.08003 * 119.87201 * 179.72205 * 17 16 15 36 36 H 1.08000 * 119.94090 * 180.26134 * 18 17 16 37 37 H 1.08006 * 120.84005 * 0.02970 * 21 20 19 38 38 H 1.08004 * 120.35899 * 180.22020 * 22 21 20 39 39 H 1.07999 * 119.48611 * 179.78735 * 23 22 21 40 40 H 1.07997 * 119.70456 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.11770 * 0.04738 * 26 15 14 42 42 H 1.08005 * 120.05429 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2306 -3.6445 -0.0005 11 6 2.6797 -4.1689 -1.1993 12 6 3.5789 -5.2197 -1.2066 13 6 4.0366 -5.7480 -0.0163 14 6 3.5839 -5.2269 1.1939 15 6 4.0693 -5.7935 2.4767 16 6 3.6198 -5.2673 3.6871 17 6 4.0746 -5.7901 4.8814 18 6 4.9676 -6.8438 4.8846 19 6 5.4237 -7.3778 3.6805 20 6 6.3875 -8.5064 3.6854 21 6 6.8509 -9.0391 4.8915 22 6 7.7455 -10.0942 4.8424 23 6 8.1560 -10.5764 3.6128 24 7 7.7049 -10.0496 2.4910 25 6 6.8489 -9.0481 2.4880 26 6 4.9731 -6.8512 2.4739 27 6 2.6782 -4.1680 1.1953 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.3268 -3.7563 -2.1329 32 1 3.9266 -5.6250 -2.1454 33 1 4.7420 -6.5658 -0.0231 34 1 2.9182 -4.4463 3.6905 35 1 3.7273 -5.3765 5.8167 36 1 5.3169 -7.2516 5.8217 37 1 6.5164 -8.6403 5.8378 38 1 8.1221 -10.5334 5.7544 39 1 8.8566 -11.3972 3.5706 40 1 6.5024 -8.6430 1.5487 41 1 5.3241 -7.2616 1.5386 42 1 2.3275 -3.7572 2.1306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243000708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:47:47 Heat of formation + Delta-G solvation = 71.492321 kcal Electronic energy + Delta-G solvation = -23475.389326 eV Core-core repulsion = 20156.190144 eV Total energy + Delta-G solvation = -3319.199182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63363 -39.45617 -38.06661 -34.01927 -33.43402 -32.42141 -32.15559 -31.10987 -29.63983 -28.54716 -27.05392 -24.43789 -24.39675 -23.32103 -22.62612 -21.92974 -20.53590 -19.65683 -18.00231 -16.78820 -16.48323 -16.32690 -16.16590 -15.50850 -14.97382 -14.77910 -14.42473 -14.31186 -13.92288 -13.87674 -13.68453 -13.54577 -13.19214 -12.89847 -12.57535 -12.47550 -12.13410 -11.84806 -11.52386 -11.29560 -11.26260 -11.01459 -10.73993 -10.51002 -10.44973 -10.30728 -9.85467 -9.73494 -9.63168 -9.50539 -9.28828 -8.46156 -8.40448 -8.01870 -7.63582 -6.08111 -4.12155 0.33475 0.92417 0.97560 1.64677 2.04040 2.28629 3.28019 3.34477 3.38627 3.47965 3.89863 4.06769 4.36977 4.37922 4.42355 4.56594 4.57821 4.67847 4.76186 4.85672 5.02496 5.12547 5.26471 5.29255 5.38158 5.39619 5.44446 5.49496 5.72356 5.76519 5.82222 5.85876 5.98708 6.05346 6.13019 6.29940 6.37601 6.43410 6.51065 6.56409 6.68024 6.86960 7.02517 7.10814 7.14610 7.44998 7.63604 7.67024 7.78111 7.87687 8.27122 8.93124 9.52047 11.01748 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.002550 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.118929 B =10977.949438 C =11619.623623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.033 4.033 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.135 4.135 14 C -0.063 4.063 15 C -0.020 4.020 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.051 4.051 20 C -0.084 4.084 21 C -0.072 4.072 22 C -0.169 4.169 23 C 0.090 3.910 24 N -0.481 5.481 25 C 0.106 3.894 26 C -0.103 4.103 27 C -0.107 4.107 28 H 0.262 0.738 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -18.803 9.819 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.010 3.990 10 C -0.033 4.033 11 C -0.134 4.134 12 C -0.140 4.140 13 C -0.153 4.153 14 C -0.064 4.064 15 C -0.020 4.020 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.135 4.135 19 C -0.052 4.052 20 C -0.086 4.086 21 C -0.098 4.098 22 C -0.189 4.189 23 C -0.067 4.067 24 N -0.189 5.189 25 C -0.052 4.052 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.146 0.854 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.419 -19.033 9.024 24.453 hybrid contribution 0.173 1.358 0.842 1.607 sum 12.592 -17.676 9.867 23.840 Atomic orbital electron populations 1.69954 1.06024 1.26873 1.50397 1.25007 0.94884 0.99268 0.95139 0.86542 0.79853 0.83138 0.78231 1.20553 1.21133 1.19786 1.21046 0.93042 0.89817 1.51134 0.92462 1.18374 0.92538 0.89574 0.98480 1.20648 0.96022 0.94955 0.91711 1.21212 0.97650 0.96059 0.98463 1.20976 0.98360 0.97432 0.97264 1.20910 1.01462 1.00974 0.91936 1.18656 0.98919 0.97474 0.91302 1.18830 0.95628 0.94727 0.92849 1.21489 0.99509 0.99782 0.91535 1.21016 0.97483 0.96428 0.98161 1.21137 0.98295 0.97155 0.96896 1.18452 0.97431 0.95572 0.93707 1.19836 0.97731 0.96563 0.94502 1.21685 0.95131 0.94848 0.98122 1.22094 0.99109 0.97937 0.99744 1.22818 0.97629 0.98429 0.87790 1.67667 1.10235 1.09765 1.31198 1.22959 0.92689 0.91872 0.97644 1.21252 0.97358 0.96319 0.97188 1.21146 0.97284 0.95402 0.98633 0.92802 0.95195 0.95282 0.86255 0.86725 0.86926 0.84961 0.85585 0.86081 0.84532 0.84620 0.82761 0.82459 0.85441 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.12 9.09 -34.44 -0.31 -14.44 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 10 C -0.03 -0.71 5.06 -104.67 -0.53 -1.24 16 11 C -0.12 -2.20 9.69 -39.52 -0.38 -2.58 16 12 C -0.12 -1.96 10.03 -39.63 -0.40 -2.36 16 13 C -0.13 -2.09 9.43 -39.25 -0.37 -2.46 16 14 C -0.06 -1.06 5.88 -104.90 -0.62 -1.68 16 15 C -0.02 -0.30 5.87 -104.94 -0.62 -0.91 16 16 C -0.11 -1.42 9.42 -39.20 -0.37 -1.79 16 17 C -0.11 -1.26 10.02 -39.68 -0.40 -1.66 16 18 C -0.12 -1.23 9.44 -39.20 -0.37 -1.60 16 19 C -0.05 -0.58 5.87 -104.94 -0.62 -1.20 16 20 C -0.08 -0.88 5.89 -104.75 -0.62 -1.50 16 21 C -0.07 -0.61 9.53 -38.95 -0.37 -0.98 16 22 C -0.17 -1.24 10.10 -39.49 -0.40 -1.64 16 23 C 0.09 0.77 11.17 -17.50 -0.20 0.57 16 24 N -0.48 -5.33 10.35 -12.98 -0.13 -5.47 16 25 C 0.11 1.14 10.60 -17.20 -0.18 0.96 16 26 C -0.10 -1.30 8.81 -38.91 -0.34 -1.65 16 27 C -0.11 -2.04 9.08 -39.26 -0.36 -2.40 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.79 8.09 -51.92 -0.42 0.37 16 30 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.41 6.20 -52.48 -0.33 1.09 16 34 H 0.13 1.77 6.19 -52.49 -0.33 1.44 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 0.94 6.26 -52.49 -0.33 0.61 16 37 H 0.14 0.86 6.32 -52.48 -0.33 0.53 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.50 6.22 -52.49 -0.33 1.17 16 41 H 0.13 1.41 4.38 -52.49 -0.23 1.18 16 42 H 0.12 2.23 6.20 -52.48 -0.33 1.91 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -31.30 354.33 -11.46 -42.76 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.69 Total: 2.33 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: -7.69 Total: -35.96 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.60 Total: -30.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.30 -11.46 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243000708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.248 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds