Wall clock time and date at job start Fri Apr 10 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46761 * 2 1 4 4 C 1.53001 * 109.47323 * 240.00241 * 2 1 3 5 5 C 1.50696 * 109.46966 * 64.99581 * 4 2 1 6 6 H 1.08001 * 120.00516 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00151 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99519 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47496 * 89.99798 * 9 7 5 11 11 H 1.48503 * 109.47003 * 209.99930 * 9 7 5 12 12 H 1.48501 * 109.47370 * 329.99573 * 9 7 5 13 13 C 1.53002 * 109.47424 * 119.99857 * 2 1 3 14 14 N 1.46899 * 109.47097 * 295.00506 * 13 2 1 15 15 C 1.46904 * 110.99947 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.46970 * 185.54884 * 15 14 13 17 17 C 1.52996 * 110.02001 * 295.55283 * 16 15 14 18 18 C 1.50696 * 109.46962 * 301.61446 * 17 16 15 19 19 C 1.38237 * 120.00251 * 269.12672 * 18 17 16 20 20 C 1.38236 * 119.99980 * 179.80821 * 19 18 17 21 21 C 1.38239 * 119.99943 * 0.39958 * 20 19 18 22 22 C 1.38233 * 120.00016 * 359.85573 * 21 20 19 23 23 C 1.38235 * 119.99846 * 89.40044 * 18 17 16 24 24 C 1.54276 * 110.07115 * 56.97059 * 16 15 14 25 25 C 1.54885 * 104.19308 * 142.91431 * 24 16 15 26 26 C 1.54890 * 102.75056 * 322.05516 * 25 24 16 27 27 C 1.53873 * 110.03185 * 174.15624 * 16 15 14 28 28 H 1.08997 * 109.47422 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47034 * 300.00062 * 1 2 3 31 31 H 1.08999 * 109.47181 * 184.99694 * 4 2 1 32 32 H 1.09002 * 109.46948 * 305.00014 * 4 2 1 33 33 H 0.97003 * 120.00053 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47032 * 174.99924 * 13 2 1 35 35 H 1.09004 * 109.46676 * 55.00182 * 13 2 1 36 36 H 1.00909 * 110.99962 * 303.95017 * 14 13 2 37 37 H 1.09000 * 109.46716 * 65.55232 * 15 14 13 38 38 H 1.08998 * 109.46808 * 305.55162 * 15 14 13 39 39 H 1.08994 * 109.47467 * 61.61613 * 17 16 15 40 40 H 1.08996 * 109.46956 * 181.61897 * 17 16 15 41 41 H 1.08002 * 119.99844 * 0.02562 * 19 18 17 42 42 H 1.08006 * 120.00011 * 180.23239 * 20 19 18 43 43 H 1.07997 * 119.99884 * 179.83337 * 21 20 19 44 44 H 1.07999 * 120.00040 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.00057 * 359.97438 * 23 18 17 46 46 H 1.09000 * 110.48629 * 24.23717 * 24 16 15 47 47 H 1.09000 * 110.48296 * 261.59137 * 24 16 15 48 48 H 1.09001 * 110.75749 * 203.74276 * 25 24 16 49 49 H 1.08998 * 110.76073 * 80.37132 * 25 24 16 50 50 H 1.09007 * 110.48599 * 156.62403 * 26 25 24 51 51 H 1.08997 * 110.48726 * 279.12897 * 26 25 24 52 52 H 1.09001 * 110.03471 * 121.38193 * 27 16 15 53 53 H 1.09007 * 110.03257 * 359.95873 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 1.6439 0.2768 -4.7994 9 14 2.9616 -1.9894 -3.9029 10 1 2.0217 -3.1332 -4.0195 11 1 3.8101 -1.9200 -5.1197 12 1 3.8237 -2.1770 -2.7084 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.5855 0.1136 4.8925 17 6 2.1637 1.5291 4.9453 18 6 3.6681 1.4557 4.9929 19 6 4.3198 1.4116 6.2112 20 6 5.6997 1.3402 6.2548 21 6 6.4282 1.3213 5.0801 22 6 5.7768 1.3707 3.8619 23 6 4.3967 1.4381 3.8183 24 6 0.0448 0.1738 4.8390 25 6 -0.3933 0.0062 6.3151 26 6 0.6200 -1.0326 6.8566 27 6 1.9511 -0.6535 6.1753 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7993 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.8912 -0.0461 -5.6801 34 1 3.1264 -0.7994 1.2055 35 1 1.6055 -1.7198 1.2951 36 1 1.9882 0.9874 2.3967 37 1 3.2146 -0.6171 3.6872 38 1 1.7706 -1.6579 3.6807 39 1 1.8548 2.0812 4.0578 40 1 1.7965 2.0385 5.8362 41 1 3.7508 1.4293 7.1290 42 1 6.2087 1.3020 7.2066 43 1 7.5063 1.2682 5.1142 44 1 6.3460 1.3563 2.9442 45 1 3.8878 1.4766 2.8665 46 1 -0.3478 -0.6404 4.2298 47 1 -0.2860 1.1367 4.4498 48 1 -1.4110 -0.3796 6.3747 49 1 -0.3045 0.9495 6.8539 50 1 0.7088 -0.9502 7.9399 51 1 0.3189 -2.0417 6.5753 52 1 2.5405 -0.0173 6.8356 53 1 2.5122 -1.5538 5.9249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652024932.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:46:13 Heat of formation + Delta-G solvation = -25.641973 kcal Electronic energy + Delta-G solvation = -27079.924805 eV Core-core repulsion = 23720.870833 eV Total energy + Delta-G solvation = -3359.053972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14176 -39.18756 -38.03410 -35.50430 -34.22639 -33.37127 -31.76113 -30.54825 -29.51656 -29.25836 -27.36722 -26.29521 -24.72707 -23.45914 -23.35379 -22.19156 -21.36659 -20.85653 -19.40003 -18.91075 -17.60162 -16.79806 -16.69899 -16.46528 -16.00521 -15.82516 -15.75842 -15.37967 -15.14351 -15.11166 -14.62677 -14.42274 -14.18029 -14.10833 -13.59960 -13.50194 -13.41662 -13.21242 -13.04000 -12.81037 -12.60113 -12.49938 -12.32536 -12.10684 -11.92355 -11.83271 -11.77261 -11.74178 -11.58538 -11.49125 -11.40346 -11.26081 -11.17910 -11.11045 -10.88770 -10.74429 -9.78526 -9.53855 -9.18621 -8.26773 -6.28773 0.49442 0.52213 1.34459 1.35727 1.47494 2.36526 2.90515 3.08388 3.26071 3.73741 3.77561 3.86395 4.02166 4.08703 4.12428 4.18422 4.28441 4.30383 4.41134 4.43073 4.49029 4.54354 4.63402 4.66989 4.69952 4.77768 4.82344 4.88612 4.92176 4.94249 4.96028 4.97776 5.04196 5.09365 5.11027 5.17753 5.21011 5.22618 5.28751 5.34899 5.39836 5.43090 5.52298 5.55299 5.59010 5.63350 5.64541 5.66473 5.71328 5.73010 5.77958 6.15821 6.16462 6.34960 6.53424 6.78789 7.34664 8.90033 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003314 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.935202 B = 8445.810977 C = 9855.119099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 H 0.048 0.952 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.250 1.250 13 C 0.076 3.924 14 N -0.677 5.677 15 C 0.070 3.930 16 C -0.041 4.041 17 C -0.069 4.069 18 C -0.077 4.077 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.132 4.132 24 C -0.098 4.098 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.115 4.115 28 H 0.025 0.975 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.019 0.981 35 H 0.067 0.933 36 H 0.337 0.663 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.078 0.922 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -0.586 30.149 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.173 1.173 13 C -0.053 4.053 14 N -0.308 5.308 15 C -0.059 4.059 16 C -0.041 4.041 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.153 4.153 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.096 0.904 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.726 -0.872 30.001 30.244 hybrid contribution 1.366 -0.273 -1.352 1.942 sum 5.093 -1.145 28.649 29.121 Atomic orbital electron populations 1.21473 0.94903 1.00575 1.00092 1.20863 0.96549 0.98260 0.92975 0.93375 1.19559 0.95671 0.95711 0.93459 1.21448 1.34235 1.08664 0.91194 0.94655 1.25982 0.97014 1.00870 0.95556 1.70069 1.49089 1.41620 0.98689 0.85711 0.79375 0.79702 0.78161 1.19298 1.21087 1.17325 1.21864 0.96587 0.97507 0.89350 1.60496 1.63873 1.05539 1.00942 1.22126 0.96789 0.97666 0.89294 1.21038 0.95578 0.93826 0.93679 1.20739 0.89932 0.96690 1.03229 1.19977 0.96043 0.98609 0.93054 1.21293 0.94704 1.00411 0.97513 1.21447 0.94321 0.99449 0.98891 1.21374 1.00789 1.00682 0.92451 1.21339 0.94731 1.00410 0.98747 1.21137 0.94502 1.01447 0.97976 1.22231 0.93277 1.01728 0.96285 1.22529 0.98717 0.99322 0.95623 1.22331 0.94626 0.98822 1.00055 1.22302 0.97794 0.99599 0.95624 0.95566 0.93954 0.91406 0.96902 0.96687 0.92679 0.96246 0.91495 0.84394 0.95519 0.92025 0.91401 0.89568 0.84287 0.84025 0.84771 0.86162 0.87537 0.92414 0.91974 0.91648 0.90970 0.90825 0.92295 0.90364 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.64 2.48 -10.79 -0.03 -2.67 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.17 8.96 25.60 0.23 -29.94 16 6 H 0.04 2.27 7.30 -2.91 -0.02 2.24 16 7 C 0.00 0.11 5.47 84.66 0.46 0.58 16 8 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 9 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.25 -11.16 6.54 99.48 0.65 -10.50 16 13 C 0.08 2.39 5.06 86.30 0.44 2.83 16 14 N -0.68 -17.40 5.43 -513.88 -2.79 -20.19 16 15 C 0.07 1.56 3.77 86.30 0.33 1.89 16 16 C -0.04 -0.72 0.48 -51.46 -0.02 -0.74 16 17 C -0.07 -1.17 3.93 29.85 0.12 -1.05 16 18 C -0.08 -1.44 4.23 -19.87 -0.08 -1.52 16 19 C -0.12 -1.94 8.39 22.27 0.19 -1.75 16 20 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 21 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 22 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 23 C -0.13 -2.91 7.77 22.27 0.17 -2.73 16 24 C -0.10 -1.77 5.46 31.67 0.17 -1.60 16 25 C -0.12 -1.78 6.91 31.88 0.22 -1.56 16 26 C -0.12 -1.65 6.83 31.67 0.22 -1.43 16 27 C -0.12 -1.76 5.66 31.32 0.18 -1.58 16 28 H 0.03 1.13 6.95 -2.39 -0.02 1.12 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 31 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 32 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 33 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.34 8.56 5.81 -89.69 -0.52 8.04 16 37 H 0.03 0.64 5.89 -2.39 -0.01 0.62 16 38 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 39 H 0.07 1.29 6.87 -2.39 -0.02 1.28 16 40 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 41 H 0.14 1.62 7.00 -2.91 -0.02 1.60 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.11 2.52 6.57 -2.91 -0.02 2.50 16 46 H 0.06 1.25 7.86 -2.39 -0.02 1.23 16 47 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.08 1.05 5.12 -2.39 -0.01 1.04 16 53 H 0.05 0.92 7.67 -2.38 -0.02 0.90 16 Total: -1.00 -65.55 396.79 3.67 -61.87 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.28 Total: 23.30 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 4.00 Total: -51.61 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.49 Total: -80.76 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -65.55 3.67 -61.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652024932.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.233 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds