Wall clock time and date at job start Fri Apr 10 2020 15:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47644 * 2 1 4 4 O 1.42898 * 109.46969 * 239.99949 * 2 1 3 5 5 C 1.42902 * 113.99881 * 90.00246 * 4 2 1 6 6 C 1.53003 * 109.47088 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.47014 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99782 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00206 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46783 * 90.00221 * 11 9 7 13 13 H 1.48496 * 109.47053 * 210.00015 * 11 9 7 14 14 H 1.48492 * 109.47365 * 330.00224 * 11 9 7 15 15 C 1.50703 * 109.47137 * 120.00526 * 2 1 3 16 16 C 1.38210 * 120.01113 * 94.99947 * 15 2 1 17 17 C 1.38304 * 120.01587 * 180.29671 * 16 15 2 18 18 Br 1.89102 * 119.98551 * 179.69937 * 17 16 15 19 19 C 1.38360 * 120.02729 * 359.45004 * 17 16 15 20 20 C 1.38158 * 120.01571 * 0.54598 * 19 17 16 21 21 C 1.38435 * 120.00234 * 275.01892 * 15 2 1 22 22 F 1.35104 * 120.02087 * 359.95501 * 21 15 2 23 23 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47008 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47125 * 59.99900 * 1 2 3 26 26 H 1.09002 * 109.46744 * 299.99651 * 5 4 2 27 27 H 1.08991 * 109.47385 * 59.99985 * 5 4 2 28 28 H 1.09002 * 109.46744 * 299.99286 * 6 5 4 29 29 H 1.08997 * 109.47711 * 59.99722 * 6 5 4 30 30 H 0.96999 * 120.00229 * 180.02562 * 10 9 7 31 31 H 1.08002 * 119.98888 * 0.02562 * 16 15 2 32 32 H 1.08004 * 119.98614 * 180.25511 * 19 17 16 33 33 H 1.08003 * 120.00777 * 179.70692 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6408 -3.4792 7 6 2.9127 0.2627 -4.6679 8 1 2.7015 1.3187 -4.5863 9 6 3.3699 -0.2589 -5.8595 10 7 3.6276 -1.5447 -5.9587 11 14 3.6232 0.8609 -7.3330 12 1 5.0104 1.3909 -7.3192 13 1 3.3996 0.0917 -8.5834 14 1 2.6612 1.9902 -7.2678 15 6 2.0323 -0.7105 1.2304 16 6 2.3611 -2.0515 1.1685 17 6 2.8163 -2.7052 2.2991 18 35 3.2577 -4.5421 2.2155 19 6 2.9536 -2.0145 3.4901 20 6 2.6255 -0.6740 3.5534 21 6 2.1642 -0.0202 2.4231 22 9 1.8435 1.2908 2.4843 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.2537 0.6547 -2.5588 27 1 2.9319 0.9513 -2.0450 28 1 3.6540 -1.1128 -3.2147 29 1 1.9756 -1.4089 -3.7282 30 1 3.9495 -1.9116 -6.7969 31 1 2.2583 -2.5901 0.2380 32 1 3.3131 -2.5246 4.3716 33 1 2.7283 -0.1361 4.4843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:50:51 Heat of formation + Delta-G solvation = -80.176469 kcal Electronic energy + Delta-G solvation = -18011.466482 eV Core-core repulsion = 14804.508931 eV Total energy + Delta-G solvation = -3206.957551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 316.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.12079 -39.55773 -37.56029 -33.67468 -32.66978 -32.03715 -30.01297 -29.46752 -28.71144 -24.86116 -23.99346 -22.66057 -20.96568 -20.83445 -17.82694 -17.12414 -16.46268 -16.02514 -15.82432 -15.21971 -14.83499 -14.74253 -14.41719 -14.15933 -13.51687 -13.26781 -12.80504 -12.72126 -12.36881 -12.23650 -11.97140 -11.51503 -11.13036 -11.05845 -10.80147 -10.69050 -10.48918 -10.40497 -10.35453 -9.55133 -9.23753 -9.21526 -8.98948 -8.67307 -8.37832 -6.04915 -4.08775 0.70833 0.95851 1.46087 3.21127 3.30032 3.36052 3.38964 3.87024 4.09102 4.40423 4.44326 4.65660 4.90808 5.05426 5.23695 5.31352 5.32811 5.36939 5.59907 5.70255 5.80541 5.88982 5.98464 6.09552 6.15765 6.27054 6.30526 6.52419 6.83414 7.47722 7.75474 7.77196 8.04949 8.32882 8.97553 9.55196 11.06643 Molecular weight = 316.02amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.003586 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.348437 B = 7806.514314 C = 9280.630522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 H 0.071 0.929 4 O -0.380 6.380 5 C 0.069 3.931 6 C 0.026 3.974 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.106 4.106 16 C -0.032 4.032 17 C -0.105 4.105 18 Br -0.044 7.044 19 C -0.067 4.067 20 C -0.152 4.152 21 C 0.117 3.883 22 F -0.133 7.133 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -2.769 22.190 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.089 0.911 4 O -0.300 6.300 5 C -0.006 4.006 6 C -0.011 4.011 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.108 4.108 16 C -0.052 4.052 17 C -0.185 4.185 18 Br 0.042 6.958 19 C -0.087 4.087 20 C -0.172 4.172 21 C 0.098 3.902 22 F -0.111 7.111 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.865 -3.746 22.015 22.514 hybrid contribution 0.019 1.498 -0.797 1.697 sum -2.846 -2.248 21.218 21.525 Atomic orbital electron populations 1.22232 0.94756 1.03078 1.02335 1.20619 0.93753 0.95001 0.84075 0.91064 1.87939 1.86144 1.36191 1.19699 1.22982 0.98294 0.93596 0.85768 1.19071 0.97109 0.95567 0.89354 1.21038 1.45079 0.94526 0.95682 0.92555 1.24982 0.95310 0.95078 0.98820 1.69977 1.44931 1.11631 1.26348 0.86532 0.78567 0.80551 0.81996 1.20563 1.21100 1.19820 1.19983 1.01984 0.94650 0.94156 1.21013 0.93255 0.93031 0.97909 1.21863 1.07634 0.92162 0.96796 1.96742 1.92611 1.07417 1.99058 1.20929 0.97711 0.93292 0.96803 1.21033 1.02995 0.95067 0.98058 1.17565 0.99976 0.78340 0.94360 1.91510 1.90187 1.32466 1.96947 0.91549 0.92083 0.91320 0.94385 0.94515 0.95711 0.95648 0.92822 0.82740 0.84153 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.51 37.15 0.35 -1.87 16 2 C 0.12 1.91 2.71 -27.88 -0.08 1.84 16 3 H 0.07 1.08 7.43 -51.93 -0.39 0.70 16 4 O -0.38 -7.34 8.82 -35.23 -0.31 -7.65 16 5 C 0.07 1.47 5.69 37.16 0.21 1.69 16 6 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 C -0.11 -1.48 5.07 -104.56 -0.53 -2.01 16 16 C -0.03 -0.45 9.09 -39.57 -0.36 -0.81 16 17 C -0.10 -1.25 6.22 -39.51 -0.25 -1.50 16 18 Br -0.04 -0.49 33.70 -68.01 -2.29 -2.79 16 19 C -0.07 -0.66 9.79 -39.57 -0.39 -1.05 16 20 C -0.15 -1.51 10.03 -39.52 -0.40 -1.90 16 21 C 0.12 1.44 7.24 -39.42 -0.29 1.16 16 22 F -0.13 -1.67 16.57 2.25 0.04 -1.63 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.04 0.77 7.87 -51.93 -0.41 0.37 16 27 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.15 2.34 7.35 -52.49 -0.39 1.96 16 32 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -29.84 311.84 -8.51 -38.35 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.09 Total: -3.99 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.28 Total: -17.45 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.31 Total: -7.65 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.84 -8.51 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.823 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds