Wall clock time and date at job start Fri Apr 10 2020 15:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47644 * 2 1 4 4 O 1.42898 * 109.46969 * 239.99949 * 2 1 3 5 5 C 1.42902 * 113.99881 * 90.00246 * 4 2 1 6 6 C 1.53003 * 109.47088 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.47014 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99782 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00206 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46783 * 90.00221 * 11 9 7 13 13 H 1.48496 * 109.47053 * 210.00015 * 11 9 7 14 14 H 1.48492 * 109.47365 * 330.00224 * 11 9 7 15 15 C 1.50703 * 109.47137 * 120.00526 * 2 1 3 16 16 C 1.38210 * 120.01113 * 94.99947 * 15 2 1 17 17 C 1.38304 * 120.01587 * 180.29671 * 16 15 2 18 18 Br 1.89102 * 119.98551 * 179.69937 * 17 16 15 19 19 C 1.38360 * 120.02729 * 359.45004 * 17 16 15 20 20 C 1.38158 * 120.01571 * 0.54598 * 19 17 16 21 21 C 1.38435 * 120.00234 * 275.01892 * 15 2 1 22 22 F 1.35104 * 120.02087 * 359.95501 * 21 15 2 23 23 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47008 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47125 * 59.99900 * 1 2 3 26 26 H 1.09002 * 109.46744 * 299.99651 * 5 4 2 27 27 H 1.08991 * 109.47385 * 59.99985 * 5 4 2 28 28 H 1.09002 * 109.46744 * 299.99286 * 6 5 4 29 29 H 1.08997 * 109.47711 * 59.99722 * 6 5 4 30 30 H 0.96999 * 120.00229 * 180.02562 * 10 9 7 31 31 H 1.08002 * 119.98888 * 0.02562 * 16 15 2 32 32 H 1.08004 * 119.98614 * 180.25511 * 19 17 16 33 33 H 1.08003 * 120.00777 * 179.70692 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6408 -3.4792 7 6 2.9127 0.2627 -4.6679 8 1 2.7015 1.3187 -4.5863 9 6 3.3699 -0.2589 -5.8595 10 7 3.6276 -1.5447 -5.9587 11 14 3.6232 0.8609 -7.3330 12 1 5.0104 1.3909 -7.3192 13 1 3.3996 0.0917 -8.5834 14 1 2.6612 1.9902 -7.2678 15 6 2.0323 -0.7105 1.2304 16 6 2.3611 -2.0515 1.1685 17 6 2.8163 -2.7052 2.2991 18 35 3.2577 -4.5421 2.2155 19 6 2.9536 -2.0145 3.4901 20 6 2.6255 -0.6740 3.5534 21 6 2.1642 -0.0202 2.4231 22 9 1.8435 1.2908 2.4843 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.2537 0.6547 -2.5588 27 1 2.9319 0.9513 -2.0450 28 1 3.6540 -1.1128 -3.2147 29 1 1.9756 -1.4089 -3.7282 30 1 3.9495 -1.9116 -6.7969 31 1 2.2583 -2.5901 0.2380 32 1 3.3131 -2.5246 4.3716 33 1 2.7283 -0.1361 4.4843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:50:49 Heat of formation + Delta-G solvation = -95.786174 kcal Electronic energy + Delta-G solvation = -18012.143370 eV Core-core repulsion = 14804.508931 eV Total energy + Delta-G solvation = -3207.634439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 316.022 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -50.06975 -40.59167 -38.92650 -35.55688 -34.11262 -33.00163 -31.67828 -30.74075 -29.68830 -26.79015 -25.10822 -23.72464 -22.78419 -22.00780 -18.80740 -18.72508 -17.94635 -17.23628 -16.85718 -16.61244 -16.43800 -16.36532 -15.60971 -15.16679 -14.58968 -14.46481 -14.31090 -14.14149 -13.87237 -13.39172 -13.19160 -12.94913 -12.89145 -12.58969 -12.34148 -12.21643 -11.90403 -11.68219 -11.47370 -11.37158 -11.29197 -10.72232 -10.49230 -10.09807 -9.61651 -8.23890 -6.37051 -0.22355 0.04048 0.54559 1.41061 1.43131 1.54271 2.27618 2.36456 2.67402 3.10125 3.10250 3.42558 3.70396 3.94166 4.04215 4.14667 4.21022 4.41534 4.42982 4.45609 4.64292 4.75304 4.83474 4.89207 4.94031 5.05648 5.07891 5.16280 5.37250 5.57183 5.60989 5.72356 6.10332 6.35368 6.78636 7.32874 8.89038 Molecular weight = 316.02amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.003586 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.348437 B = 7806.514314 C = 9280.630522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 H 0.074 0.926 4 O -0.397 6.397 5 C 0.086 3.914 6 C 0.030 3.970 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.973 3.027 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.260 1.260 15 C -0.123 4.123 16 C -0.052 4.052 17 C -0.111 4.111 18 Br -0.042 7.042 19 C -0.056 4.056 20 C -0.136 4.136 21 C 0.111 3.889 22 F -0.134 7.134 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.043 0.957 28 H -0.007 1.007 29 H -0.004 1.004 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.174 0.826 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -1.322 23.773 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.091 0.909 4 O -0.317 6.317 5 C 0.010 3.990 6 C -0.007 4.007 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.796 3.204 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.184 1.184 15 C -0.125 4.125 16 C -0.072 4.072 17 C -0.190 4.190 18 Br 0.044 6.956 19 C -0.075 4.075 20 C -0.155 4.155 21 C 0.091 3.909 22 F -0.113 7.113 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.191 0.809 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.892 -2.292 23.619 23.905 hybrid contribution 0.029 0.979 -1.175 1.530 sum -2.863 -1.313 22.443 22.663 Atomic orbital electron populations 1.22190 0.93264 1.03152 1.03228 1.20846 0.95028 0.95020 0.83115 0.90852 1.87902 1.86712 1.36625 1.20441 1.22543 0.98706 0.92635 0.85092 1.18914 0.94886 0.95323 0.91598 1.21465 1.45197 0.95243 0.96512 0.91467 1.26012 0.94669 0.96664 1.02280 1.70122 1.45719 1.13807 1.27418 0.85335 0.78971 0.78532 0.77533 1.19639 1.20641 1.18377 1.19874 1.03558 0.94802 0.94292 1.20830 0.95173 0.93293 0.97902 1.21981 1.07569 0.92438 0.97055 1.96742 1.92531 1.07241 1.99099 1.21320 0.96090 0.93277 0.96823 1.21422 1.00689 0.94955 0.98409 1.17678 1.00404 0.78292 0.94479 1.91506 1.90276 1.32572 1.96943 0.91899 0.89886 0.91628 0.93226 0.93840 0.98849 0.98535 0.92556 0.85228 0.80901 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.51 71.98 0.68 -3.55 16 2 C 0.12 3.64 2.71 29.85 0.08 3.72 16 3 H 0.07 2.21 7.43 -2.39 -0.02 2.19 16 4 O -0.40 -15.88 8.82 -148.98 -1.31 -17.19 16 5 C 0.09 3.76 5.69 71.98 0.41 4.17 16 6 C 0.03 1.66 5.34 29.85 0.16 1.82 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.11 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 11 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 15 C -0.12 -3.41 5.07 -19.82 -0.10 -3.51 16 16 C -0.05 -1.47 9.09 22.28 0.20 -1.27 16 17 C -0.11 -2.53 6.22 22.31 0.14 -2.39 16 18 Br -0.04 -0.91 33.70 -20.37 -0.69 -1.60 16 19 C -0.06 -0.93 9.79 22.28 0.22 -0.71 16 20 C -0.14 -2.22 10.03 22.31 0.22 -2.00 16 21 C 0.11 2.52 7.24 22.38 0.16 2.68 16 22 F -0.13 -3.10 16.57 44.97 0.75 -2.35 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.74 7.87 -2.39 -0.02 1.72 16 26 H 0.05 2.03 7.87 -2.39 -0.02 2.02 16 27 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.13 4.23 7.35 -2.91 -0.02 4.21 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -65.81 311.84 5.04 -60.78 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.11 Total: 2.94 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 2.87 Total: -31.56 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.31 Total: -17.19 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.35 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.69 Total: -1.60 kcal Total: -65.81 5.04 -60.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.008 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds