Wall clock time and date at job start Fri Apr 10 2020 15:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47000 * 60.00482 * 8 6 4 10 10 H 1.48506 * 109.47330 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47185 * 300.00291 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.46891 * 110.99805 * 293.95468 * 17 16 15 19 19 C 1.46899 * 110.99966 * 169.99737 * 17 16 15 20 20 C 1.52994 * 109.47221 * 299.99805 * 19 17 16 21 21 C 1.53002 * 109.46866 * 179.97438 * 20 19 17 22 22 C 1.53007 * 109.47008 * 60.00711 * 21 20 19 23 23 C 1.53001 * 109.46543 * 299.99613 * 22 21 20 24 24 C 1.53002 * 109.47153 * 60.00475 * 23 22 21 25 25 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 26 26 C 1.38102 * 120.07322 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 34 34 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 35 35 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 36 36 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 37 37 H 1.09003 * 109.47426 * 59.99698 * 18 17 16 38 38 H 1.09007 * 109.47349 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47902 * 299.99682 * 18 17 16 40 40 H 1.08998 * 109.47113 * 60.00589 * 19 17 16 41 41 H 1.08998 * 109.47718 * 300.00414 * 20 19 17 42 42 H 1.08997 * 109.46954 * 60.00586 * 20 19 17 43 43 H 1.08989 * 109.47382 * 300.00480 * 21 20 19 44 44 H 1.09000 * 109.47100 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47168 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.46994 * 59.99784 * 22 21 20 47 47 H 1.08998 * 109.47615 * 299.99790 * 23 22 21 48 48 H 1.08997 * 109.46769 * 179.97438 * 23 22 21 49 49 H 1.09000 * 109.47100 * 179.97438 * 24 23 22 50 50 H 1.08989 * 109.47382 * 59.99470 * 24 23 22 51 51 H 1.08000 * 119.95995 * 180.02562 * 25 15 14 52 52 H 1.08005 * 120.03290 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4340 11 1 4.2414 2.3820 -4.1333 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 3.2845 -5.6587 -2.0665 19 6 5.4755 -6.4705 -1.4316 20 6 6.8086 -6.0635 -0.8007 21 6 7.7777 -7.2466 -0.8486 22 6 8.0072 -7.6591 -2.3041 23 6 6.6740 -8.0660 -2.9350 24 6 5.7049 -6.8830 -2.8870 25 6 2.1641 -3.6077 0.0011 26 6 1.4705 -2.4135 0.0015 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0943 -0.2771 -0.0098 34 1 5.3199 -2.4113 -0.0003 35 1 5.2530 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5140 37 1 2.6414 -4.7787 -2.0786 38 1 3.4943 -5.9691 -3.0902 39 1 2.7825 -6.4683 -1.5368 40 1 5.0529 -7.3095 -0.8788 41 1 7.2312 -5.2245 -1.3534 42 1 6.6452 -5.7701 0.2363 43 1 7.3549 -8.0852 -0.2956 44 1 8.7273 -6.9568 -0.3988 45 1 8.6979 -8.5016 -2.3383 46 1 8.4300 -6.8204 -2.8571 47 1 6.2512 -8.9047 -2.3819 48 1 6.8374 -8.3595 -3.9719 49 1 4.7553 -7.1727 -3.3369 50 1 6.1277 -6.0443 -3.4400 51 1 1.6259 -4.5441 0.0019 52 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157504108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:47:23 Heat of formation + Delta-G solvation = 21.040782 kcal Electronic energy + Delta-G solvation = -26654.247498 eV Core-core repulsion = 23231.791932 eV Total energy + Delta-G solvation = -3422.455567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64680 -38.72910 -36.44905 -35.00876 -32.69484 -31.24133 -30.57990 -30.37695 -29.01324 -27.80815 -26.85212 -25.07145 -23.72211 -22.65169 -22.07060 -21.50688 -20.87473 -19.77067 -19.49363 -16.67088 -16.46197 -16.32564 -15.36046 -15.05914 -14.87537 -14.63020 -14.35940 -14.21020 -14.06542 -13.77088 -13.64746 -13.39725 -12.93439 -12.87903 -12.78549 -12.52614 -12.22935 -12.09574 -11.78997 -11.53023 -11.45124 -11.41381 -11.34509 -11.23983 -11.19470 -10.94522 -10.78391 -10.64678 -10.59467 -10.36484 -10.23015 -10.05301 -9.88248 -9.70931 -8.80049 -8.47929 -8.23975 -8.15670 -6.43268 -5.99181 -4.14905 2.15016 2.25543 3.30299 3.34302 3.38203 3.94506 4.17998 4.43667 4.51032 4.55599 4.65604 4.82047 5.03659 5.07952 5.18633 5.23677 5.26259 5.30270 5.34087 5.35517 5.43786 5.52397 5.57341 5.59546 5.61987 5.71287 5.74408 5.81496 5.88204 5.92785 5.96961 6.03707 6.04821 6.05350 6.12553 6.14620 6.16091 6.31047 6.31657 6.42194 6.47177 6.67516 6.96452 7.04611 7.13060 7.22391 7.27916 7.30849 7.41623 7.64527 7.83346 8.18070 8.29425 8.51468 8.93782 9.51803 10.97961 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002898 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.317485 B = 9659.215865 C =10656.778112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.617 5.617 3 C 0.250 3.750 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.241 3.759 13 C -0.188 4.188 14 C -0.052 4.052 15 C -0.165 4.165 16 C 0.107 3.893 17 N -0.532 5.532 18 C 0.021 3.979 19 C 0.087 3.913 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.068 4.068 26 C -0.222 4.222 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.103 0.897 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -21.943 0.314 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.323 5.323 3 C 0.130 3.870 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.134 3.866 13 C -0.210 4.210 14 C -0.071 4.071 15 C -0.168 4.168 16 C -0.020 4.020 17 N -0.255 5.255 18 C -0.127 4.127 19 C -0.021 4.021 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.087 4.087 26 C -0.245 4.245 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.121 0.879 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.603 -21.143 0.118 21.448 hybrid contribution -0.316 -0.168 -0.661 0.752 sum 3.287 -21.311 -0.543 21.570 Atomic orbital electron populations 1.21447 0.81571 1.00931 1.00381 1.47084 1.04334 1.04657 1.76179 1.19288 0.92066 0.78686 0.96959 1.21539 1.36353 1.06368 0.92676 0.92344 1.24953 0.95418 0.96282 0.97387 1.69916 1.38387 1.14404 1.30814 0.86586 0.78435 0.77857 0.84768 1.20265 1.21193 1.20043 1.17931 0.91510 0.85892 0.91260 1.20890 0.92642 0.98791 1.08693 1.20617 0.98676 0.91311 0.96509 1.19132 0.93063 0.93768 1.10808 1.20909 0.99013 0.93711 0.88318 1.62050 1.12377 1.34860 1.16245 1.22471 0.91366 1.00362 0.98504 1.21602 0.93033 0.91369 0.96143 1.21656 0.94408 0.98317 1.00936 1.21522 0.99271 0.98158 0.96613 1.21547 0.97076 1.00968 0.96184 1.21520 0.95608 0.97875 1.00531 1.21662 0.99254 0.98252 0.96112 1.20503 0.93357 0.96371 0.98519 1.20509 0.98880 0.91404 1.13735 0.94160 0.92878 0.92103 0.95268 0.94651 0.92610 0.85124 0.87137 0.90376 0.95253 0.90455 0.91579 0.96402 0.94818 0.90849 0.91736 0.92333 0.91895 0.92328 0.91799 0.92333 0.92005 0.91904 0.90953 0.87867 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.23 59.85 0.61 2.41 16 2 N -0.62 -13.37 2.99 -180.99 -0.54 -13.91 16 3 C 0.25 6.33 4.95 -5.19 -0.03 6.30 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 13 C -0.19 -3.86 9.21 -39.38 -0.36 -4.23 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 15 C -0.16 -2.60 4.89 -104.59 -0.51 -3.11 16 16 C 0.11 1.40 4.93 -4.98 -0.02 1.37 16 17 N -0.53 -6.72 4.62 -236.34 -1.09 -7.81 16 18 C 0.02 0.25 8.76 60.06 0.53 0.78 16 19 C 0.09 0.91 1.94 -67.71 -0.13 0.78 16 20 C -0.12 -1.14 5.00 -26.73 -0.13 -1.27 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.12 -1.10 4.85 -26.73 -0.13 -1.23 16 25 C -0.07 -1.07 7.95 -39.61 -0.32 -1.39 16 26 C -0.22 -3.90 9.21 -39.38 -0.36 -4.27 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.80 6.20 -51.93 -0.32 0.48 16 29 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 30 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 31 H 0.04 0.95 6.21 -51.93 -0.32 0.62 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 33 H 0.13 2.97 6.15 -52.49 -0.32 2.65 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.08 0.97 5.77 -51.93 -0.30 0.67 16 36 H 0.03 0.36 8.06 -51.93 -0.42 -0.05 16 37 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 38 H 0.07 0.73 6.01 -51.92 -0.31 0.42 16 39 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.64 6.20 -51.93 -0.32 0.32 16 43 H 0.06 0.46 8.14 -51.94 -0.42 0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 50 H 0.07 0.77 8.14 -51.94 -0.42 0.35 16 51 H 0.10 1.39 8.03 -52.49 -0.42 0.97 16 52 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -28.80 393.26 -11.82 -40.62 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -9.15 Total: 1.18 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.69 Total: -17.41 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.90 Total: -46.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.80 -11.82 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157504108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.660 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds