Wall clock time and date at job start Fri Apr 10 2020 15:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47000 * 60.00482 * 8 6 4 10 10 H 1.48506 * 109.47330 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47185 * 300.00291 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.46891 * 110.99805 * 293.95468 * 17 16 15 19 19 C 1.46899 * 110.99966 * 169.99737 * 17 16 15 20 20 C 1.52994 * 109.47221 * 299.99805 * 19 17 16 21 21 C 1.53002 * 109.46866 * 179.97438 * 20 19 17 22 22 C 1.53007 * 109.47008 * 60.00711 * 21 20 19 23 23 C 1.53001 * 109.46543 * 299.99613 * 22 21 20 24 24 C 1.53002 * 109.47153 * 60.00475 * 23 22 21 25 25 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 26 26 C 1.38102 * 120.07322 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 34 34 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 35 35 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 36 36 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 37 37 H 1.09003 * 109.47426 * 59.99698 * 18 17 16 38 38 H 1.09007 * 109.47349 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47902 * 299.99682 * 18 17 16 40 40 H 1.08998 * 109.47113 * 60.00589 * 19 17 16 41 41 H 1.08998 * 109.47718 * 300.00414 * 20 19 17 42 42 H 1.08997 * 109.46954 * 60.00586 * 20 19 17 43 43 H 1.08989 * 109.47382 * 300.00480 * 21 20 19 44 44 H 1.09000 * 109.47100 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47168 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.46994 * 59.99784 * 22 21 20 47 47 H 1.08998 * 109.47615 * 299.99790 * 23 22 21 48 48 H 1.08997 * 109.46769 * 179.97438 * 23 22 21 49 49 H 1.09000 * 109.47100 * 179.97438 * 24 23 22 50 50 H 1.08989 * 109.47382 * 59.99470 * 24 23 22 51 51 H 1.08000 * 119.95995 * 180.02562 * 25 15 14 52 52 H 1.08005 * 120.03290 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4340 11 1 4.2414 2.3820 -4.1333 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 3.2845 -5.6587 -2.0665 19 6 5.4755 -6.4705 -1.4316 20 6 6.8086 -6.0635 -0.8007 21 6 7.7777 -7.2466 -0.8486 22 6 8.0072 -7.6591 -2.3041 23 6 6.6740 -8.0660 -2.9350 24 6 5.7049 -6.8830 -2.8870 25 6 2.1641 -3.6077 0.0011 26 6 1.4705 -2.4135 0.0015 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0943 -0.2771 -0.0098 34 1 5.3199 -2.4113 -0.0003 35 1 5.2530 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5140 37 1 2.6414 -4.7787 -2.0786 38 1 3.4943 -5.9691 -3.0902 39 1 2.7825 -6.4683 -1.5368 40 1 5.0529 -7.3095 -0.8788 41 1 7.2312 -5.2245 -1.3534 42 1 6.6452 -5.7701 0.2363 43 1 7.3549 -8.0852 -0.2956 44 1 8.7273 -6.9568 -0.3988 45 1 8.6979 -8.5016 -2.3383 46 1 8.4300 -6.8204 -2.8571 47 1 6.2512 -8.9047 -2.3819 48 1 6.8374 -8.3595 -3.9719 49 1 4.7553 -7.1727 -3.3369 50 1 6.1277 -6.0443 -3.4400 51 1 1.6259 -4.5441 0.0019 52 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157504108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:47:22 Heat of formation + Delta-G solvation = 7.328995 kcal Electronic energy + Delta-G solvation = -26654.842086 eV Core-core repulsion = 23231.791932 eV Total energy + Delta-G solvation = -3423.050154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74351 -39.90268 -37.69367 -36.23987 -34.73400 -32.13064 -31.90399 -31.55934 -29.95428 -29.64970 -28.00397 -26.57571 -25.12740 -23.79881 -23.09695 -22.93711 -21.79836 -20.91935 -20.52718 -18.64743 -18.09169 -17.25832 -16.91204 -16.31222 -16.13692 -15.74048 -15.55082 -15.31861 -15.23297 -14.84585 -14.83106 -14.62594 -14.35458 -14.04623 -14.00020 -13.85585 -13.35525 -13.24875 -13.16727 -13.04811 -12.90802 -12.67065 -12.53438 -12.51133 -12.29435 -12.20066 -12.14914 -11.95387 -11.78309 -11.75134 -11.40815 -11.39112 -11.10799 -10.79733 -10.63937 -10.36740 -9.64692 -9.12416 -8.35879 -7.79411 -6.37416 0.71840 0.84754 1.36309 1.38723 1.46763 2.34158 2.63727 2.90848 3.05941 3.34924 3.80157 3.85556 4.04141 4.08692 4.16112 4.23084 4.33446 4.36082 4.42082 4.43376 4.49719 4.57675 4.62989 4.63991 4.66607 4.70238 4.71726 4.75971 4.83340 4.87488 4.92710 4.99644 5.01485 5.10080 5.13228 5.19000 5.20513 5.22283 5.32416 5.32804 5.33564 5.38818 5.41245 5.58874 5.60427 5.67988 5.70112 5.94150 6.07469 6.18895 6.25623 6.34001 6.50332 6.82689 6.94345 7.34316 8.83045 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002898 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.317485 B = 9659.215865 C =10656.778112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.267 3.733 4 C -0.542 4.542 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.213 3.787 13 C -0.216 4.216 14 C -0.056 4.056 15 C -0.151 4.151 16 C 0.111 3.889 17 N -0.549 5.549 18 C 0.022 3.978 19 C 0.089 3.911 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.060 4.060 26 C -0.216 4.216 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.138 0.862 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -25.061 -0.417 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.341 5.341 3 C 0.145 3.855 4 C -0.581 4.581 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.200 1.200 12 C 0.108 3.892 13 C -0.239 4.239 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.016 4.016 17 N -0.273 5.273 18 C -0.125 4.125 19 C -0.018 4.018 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.079 4.079 26 C -0.239 4.239 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.155 0.845 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.266 -24.300 -0.613 24.527 hybrid contribution -0.169 0.672 -0.408 0.804 sum 3.098 -23.629 -1.020 23.853 Atomic orbital electron populations 1.21585 0.79408 1.02556 1.00733 1.46954 1.05618 1.03729 1.77764 1.18780 0.91086 0.80234 0.95356 1.21741 1.36474 1.06493 0.93381 0.93481 1.25767 0.95060 0.96303 1.01487 1.70021 1.38953 1.14811 1.32840 0.85579 0.78590 0.77563 0.79788 1.19319 1.20218 1.19986 1.18193 0.91559 0.86487 0.92970 1.20770 0.93249 0.98450 1.11404 1.20749 0.99245 0.91169 0.96397 1.19470 0.93530 0.94262 1.08160 1.20870 0.99205 0.92411 0.89073 1.61995 1.13092 1.36387 1.15832 1.22441 0.90918 0.99951 0.99226 1.21637 0.92633 0.90704 0.96857 1.21644 0.94594 0.98568 1.00448 1.21503 0.99052 0.97578 0.97076 1.21555 0.97303 1.01185 0.95744 1.21502 0.95163 0.97250 1.01233 1.21640 0.99786 0.98372 0.95260 1.20871 0.93390 0.97031 0.96617 1.20762 0.99978 0.90652 1.12479 0.94337 0.89732 0.92015 0.97173 0.97184 0.92354 0.88829 0.86306 0.89800 0.93622 0.92273 0.90845 0.94909 0.94129 0.92557 0.91860 0.91512 0.91389 0.90981 0.92626 0.91528 0.91233 0.91607 0.92583 0.84473 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.54 10.23 127.77 1.31 4.85 16 2 N -0.63 -28.32 2.99 -726.54 -2.17 -30.50 16 3 C 0.27 14.33 4.95 85.63 0.42 14.76 16 4 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 5 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 6 C 0.01 0.75 5.46 84.65 0.46 1.21 16 7 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.21 8.88 6.55 38.21 0.25 9.13 16 13 C -0.22 -9.35 9.21 22.40 0.21 -9.14 16 14 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 15 C -0.15 -4.52 4.89 -19.84 -0.10 -4.62 16 16 C 0.11 2.62 4.93 85.55 0.42 3.04 16 17 N -0.55 -12.70 4.62 -901.63 -4.17 -16.87 16 18 C 0.02 0.48 8.76 127.69 1.12 1.60 16 19 C 0.09 1.67 1.94 44.92 0.09 1.76 16 20 C -0.11 -2.07 5.00 30.59 0.15 -1.92 16 21 C -0.11 -1.60 5.92 30.60 0.18 -1.42 16 22 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 23 C -0.11 -1.51 5.92 30.60 0.18 -1.33 16 24 C -0.11 -1.93 4.85 30.60 0.15 -1.78 16 25 C -0.06 -1.73 7.95 22.25 0.18 -1.55 16 26 C -0.22 -7.24 9.21 22.40 0.21 -7.03 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.41 6.20 -2.39 -0.01 2.39 16 29 H 0.06 2.12 7.89 -2.39 -0.02 2.11 16 30 H 0.01 0.58 7.89 -2.38 -0.02 0.56 16 31 H 0.01 0.59 6.21 -2.39 -0.01 0.58 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.09 4.67 6.15 -2.91 -0.02 4.66 16 34 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.08 1.90 5.77 -2.39 -0.01 1.88 16 36 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16 37 H 0.06 1.48 6.16 -2.39 -0.01 1.47 16 38 H 0.07 1.45 6.01 -2.38 -0.01 1.44 16 39 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.14 6.20 -2.39 -0.01 1.13 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 1.08 6.26 -2.39 -0.01 1.06 16 50 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.14 3.07 8.03 -2.91 -0.02 3.05 16 52 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 Total: -1.00 -64.14 393.26 2.71 -61.43 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.87 Total: 20.51 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.87 Total: -26.62 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -6.06 Total: -102.31 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.14 2.71 -61.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157504108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.758 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds