Wall clock time and date at job start Fri Apr 10 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47254 * 274.53182 * 3 2 1 5 5 H 1.48503 * 109.46722 * 34.53457 * 3 2 1 6 6 H 1.48495 * 109.46738 * 154.53049 * 3 2 1 7 7 C 1.40242 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 198.01032 * 7 2 1 9 9 C 1.41092 * 119.99845 * 18.01485 * 7 2 1 10 10 C 1.40900 * 120.09427 * 205.06659 * 9 7 2 11 11 C 1.36304 * 119.89844 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.09910 * 0.02562 * 11 10 9 13 13 C 1.47507 * 119.89996 * 179.97438 * 12 11 10 14 14 O 1.21505 * 120.00243 * 359.97438 * 13 12 11 15 15 O 1.34779 * 119.99755 * 179.97438 * 13 12 11 16 16 C 1.45201 * 116.99808 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46969 * 180.02562 * 16 15 13 18 18 C 1.38157 * 119.61313 * 359.73002 * 17 16 15 19 19 C 1.38790 * 119.14616 * 179.74986 * 18 17 16 20 20 Cl 1.73598 * 120.80179 * 180.28315 * 19 18 17 21 21 C 1.38813 * 118.38651 * 0.51342 * 19 18 17 22 22 C 1.38127 * 119.15156 * 359.75089 * 21 19 18 23 23 N 1.31884 * 119.60839 * 179.97438 * 17 16 15 24 24 C 1.40069 * 120.20003 * 0.24816 * 12 11 10 25 25 C 1.36306 * 120.09933 * 359.48602 * 24 12 11 26 26 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05498 * 0.02562 * 10 9 7 28 28 H 1.07992 * 119.95165 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47181 * 300.00529 * 16 15 13 30 30 H 1.09001 * 109.46862 * 60.00456 * 16 15 13 31 31 H 1.08006 * 120.43081 * 0.02562 * 18 17 16 32 32 H 1.08006 * 120.42023 * 179.77296 * 21 19 18 33 33 H 1.07997 * 119.60944 * 180.02562 * 22 21 19 34 34 H 1.07995 * 119.95390 * 179.74858 * 24 12 11 35 35 H 1.07997 * 120.04819 * 180.25615 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3921 2.1018 -1.3957 5 1 1.4890 2.6231 0.7937 6 1 3.5825 1.4143 0.6021 7 6 2.0076 -1.2145 -0.0005 8 1 3.0479 -1.2376 0.2886 9 6 1.3539 -2.4063 -0.3790 10 6 1.8211 -3.6489 0.0932 11 6 1.1870 -4.7978 -0.2754 12 6 0.0728 -4.7444 -1.1225 13 6 -0.6099 -5.9904 -1.5190 14 8 -0.2052 -7.0611 -1.1112 15 8 -1.6825 -5.9413 -2.3337 16 6 -2.3036 -7.2065 -2.6826 17 6 -3.4775 -6.9553 -3.5937 18 6 -3.7984 -5.6603 -3.9524 19 6 -4.8782 -5.4405 -4.7962 20 17 -5.3150 -3.8317 -5.2803 21 6 -5.6033 -6.5380 -5.2396 22 6 -5.2253 -7.8029 -4.8334 23 7 -4.1892 -7.9740 -4.0353 24 6 -0.3917 -3.5118 -1.5989 25 6 0.2330 -2.3575 -1.2312 26 1 -0.4850 0.8401 0.0004 27 1 2.6804 -3.6911 0.7460 28 1 1.5446 -5.7507 0.0856 29 1 -1.5773 -7.8395 -3.1924 30 1 -2.6470 -7.7049 -1.7761 31 1 -3.2138 -4.8300 -3.5847 32 1 -6.4520 -6.4045 -5.8942 33 1 -5.7840 -8.6620 -5.1743 34 1 -1.2487 -3.4756 -2.2551 35 1 -0.1284 -1.4072 -1.5957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536546708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:49:31 Heat of formation + Delta-G solvation = -45.994157 kcal Electronic energy + Delta-G solvation = -22207.382098 eV Core-core repulsion = 18581.677803 eV Total energy + Delta-G solvation = -3625.704295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60002 -39.55667 -37.52454 -36.94424 -35.82327 -33.99777 -32.64751 -32.13031 -30.39599 -29.56400 -27.56161 -25.96650 -23.92807 -22.73090 -21.94506 -21.01518 -20.00664 -17.63048 -17.58326 -17.24405 -16.27301 -16.14487 -16.08190 -15.66183 -15.35941 -14.49542 -14.14776 -14.05072 -13.88635 -13.41597 -13.05881 -12.96636 -12.44899 -12.31540 -12.28496 -12.14514 -11.86303 -11.47178 -11.36042 -11.18487 -11.03555 -10.76934 -10.48073 -10.17572 -9.85302 -9.67852 -9.66901 -9.54309 -9.43033 -9.25274 -7.81088 -7.69346 -7.14679 -4.72619 0.70730 0.82504 1.71642 1.98696 2.83306 2.90299 2.93644 2.96033 2.98128 3.38465 3.56966 3.67161 4.17380 4.39636 4.41363 4.64906 4.81513 5.06703 5.25661 5.36413 5.46665 5.46934 5.52234 5.73997 5.95672 6.13741 6.20542 6.26790 6.69636 6.74547 6.92312 6.93177 7.03971 7.36117 7.59703 7.61998 7.72525 7.77928 7.95606 8.30083 8.51458 8.63110 8.64422 9.76754 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.003152 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.617113 B = 8881.400171 C =10722.727570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.239 4.239 11 C -0.016 4.016 12 C -0.275 4.275 13 C 0.519 3.481 14 O -0.548 6.548 15 O -0.361 6.361 16 C 0.120 3.880 17 C 0.145 3.855 18 C -0.139 4.139 19 C 0.008 3.992 20 Cl -0.049 7.049 21 C -0.171 4.171 22 C 0.117 3.883 23 N -0.478 5.478 24 C -0.042 4.042 25 C -0.184 4.184 26 H 0.289 0.711 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -5.277 -9.004 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.258 4.258 11 C -0.035 4.035 12 C -0.278 4.278 13 C 0.371 3.629 14 O -0.441 6.441 15 O -0.278 6.278 16 C 0.045 3.955 17 C 0.008 3.992 18 C -0.160 4.160 19 C -0.027 4.027 20 Cl -0.020 7.020 21 C -0.192 4.192 22 C -0.041 4.041 23 N -0.188 5.188 24 C -0.061 4.061 25 C -0.203 4.203 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.118 0.882 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.839 -6.121 -8.660 14.466 hybrid contribution -0.160 1.617 -0.303 1.653 sum -10.000 -4.504 -8.963 14.164 Atomic orbital electron populations 1.69742 1.07998 1.30405 1.30279 1.26163 0.94857 1.02100 0.91866 0.86154 0.80680 0.79639 0.79621 1.18850 1.19858 1.18121 1.19959 0.98563 0.91184 1.36301 0.89391 1.17853 0.90211 0.92201 0.86893 1.20692 1.04832 0.92443 1.07837 1.20348 0.92435 0.97451 0.93262 1.18159 1.04837 0.89039 1.15726 1.21563 0.76538 0.90371 0.74396 1.90718 1.65789 1.32043 1.55598 1.86502 1.44330 1.33492 1.63514 1.21183 0.91447 0.85219 0.97685 1.20829 0.94910 0.88439 0.95015 1.22047 0.96725 0.99836 0.97376 1.21364 0.96371 0.87316 0.97610 1.98410 1.92188 1.21170 1.90236 1.22109 1.01824 0.92400 1.02850 1.22711 0.92569 0.96105 0.92698 1.67226 1.06172 1.34751 1.10690 1.20614 0.97068 0.91927 0.96529 1.20993 1.00159 0.97041 1.02090 0.89946 0.88006 0.87873 0.88943 0.88927 0.82181 0.83662 0.81486 0.88151 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.72 10.99 55.56 0.61 -17.11 16 2 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 3 Si 0.92 16.67 29.60 -169.99 -5.03 11.63 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.43 -10.38 9.04 -37.75 -0.34 -10.72 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 10 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 11 C -0.02 -0.37 9.52 -39.59 -0.38 -0.75 16 12 C -0.28 -6.24 5.89 -104.75 -0.62 -6.85 16 13 C 0.52 10.98 7.89 34.51 0.27 11.26 16 14 O -0.55 -12.37 16.11 -19.27 -0.31 -12.68 16 15 O -0.36 -6.52 7.89 -40.71 -0.32 -6.84 16 16 C 0.12 1.82 6.02 36.01 0.22 2.04 16 17 C 0.15 2.00 6.78 -82.60 -0.56 1.44 16 18 C -0.14 -1.86 9.24 -39.41 -0.36 -2.22 16 19 C 0.01 0.09 6.37 -39.16 -0.25 -0.16 16 20 Cl -0.05 -0.54 29.02 -51.86 -1.50 -2.04 16 21 C -0.17 -1.58 9.94 -39.41 -0.39 -1.97 16 22 C 0.12 1.12 11.18 -17.56 -0.20 0.92 16 23 N -0.48 -6.05 10.27 -9.49 -0.10 -6.15 16 24 C -0.04 -0.95 9.55 -39.59 -0.38 -1.33 16 25 C -0.18 -4.43 8.63 -39.27 -0.34 -4.76 16 26 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 27 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.16 2.26 6.98 -52.48 -0.37 1.89 16 32 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.10 2.02 7.59 -52.49 -0.40 1.63 16 35 H 0.12 2.94 6.20 -52.49 -0.33 2.62 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -26.95 330.73 -9.21 -36.17 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.15 Total: 6.88 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -4.39 Total: -14.85 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.51 Total: -23.25 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.63 Total: -19.52 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.63 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.95 -9.21 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536546708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.829 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds