Wall clock time and date at job start Fri Apr 10 2020 15:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47254 * 274.53182 * 3 2 1 5 5 H 1.48503 * 109.46722 * 34.53457 * 3 2 1 6 6 H 1.48495 * 109.46738 * 154.53049 * 3 2 1 7 7 C 1.40242 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 198.01032 * 7 2 1 9 9 C 1.41092 * 119.99845 * 18.01485 * 7 2 1 10 10 C 1.40900 * 120.09427 * 205.06659 * 9 7 2 11 11 C 1.36304 * 119.89844 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.09910 * 0.02562 * 11 10 9 13 13 C 1.47507 * 119.89996 * 179.97438 * 12 11 10 14 14 O 1.21505 * 120.00243 * 359.97438 * 13 12 11 15 15 O 1.34779 * 119.99755 * 179.97438 * 13 12 11 16 16 C 1.45201 * 116.99808 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46969 * 180.02562 * 16 15 13 18 18 C 1.38157 * 119.61313 * 359.73002 * 17 16 15 19 19 C 1.38790 * 119.14616 * 179.74986 * 18 17 16 20 20 Cl 1.73598 * 120.80179 * 180.28315 * 19 18 17 21 21 C 1.38813 * 118.38651 * 0.51342 * 19 18 17 22 22 C 1.38127 * 119.15156 * 359.75089 * 21 19 18 23 23 N 1.31884 * 119.60839 * 179.97438 * 17 16 15 24 24 C 1.40069 * 120.20003 * 0.24816 * 12 11 10 25 25 C 1.36306 * 120.09933 * 359.48602 * 24 12 11 26 26 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05498 * 0.02562 * 10 9 7 28 28 H 1.07992 * 119.95165 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47181 * 300.00529 * 16 15 13 30 30 H 1.09001 * 109.46862 * 60.00456 * 16 15 13 31 31 H 1.08006 * 120.43081 * 0.02562 * 18 17 16 32 32 H 1.08006 * 120.42023 * 179.77296 * 21 19 18 33 33 H 1.07997 * 119.60944 * 180.02562 * 22 21 19 34 34 H 1.07995 * 119.95390 * 179.74858 * 24 12 11 35 35 H 1.07997 * 120.04819 * 180.25615 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3921 2.1018 -1.3957 5 1 1.4890 2.6231 0.7937 6 1 3.5825 1.4143 0.6021 7 6 2.0076 -1.2145 -0.0005 8 1 3.0479 -1.2376 0.2886 9 6 1.3539 -2.4063 -0.3790 10 6 1.8211 -3.6489 0.0932 11 6 1.1870 -4.7978 -0.2754 12 6 0.0728 -4.7444 -1.1225 13 6 -0.6099 -5.9904 -1.5190 14 8 -0.2052 -7.0611 -1.1112 15 8 -1.6825 -5.9413 -2.3337 16 6 -2.3036 -7.2065 -2.6826 17 6 -3.4775 -6.9553 -3.5937 18 6 -3.7984 -5.6603 -3.9524 19 6 -4.8782 -5.4405 -4.7962 20 17 -5.3150 -3.8317 -5.2803 21 6 -5.6033 -6.5380 -5.2396 22 6 -5.2253 -7.8029 -4.8334 23 7 -4.1892 -7.9740 -4.0353 24 6 -0.3917 -3.5118 -1.5989 25 6 0.2330 -2.3575 -1.2312 26 1 -0.4850 0.8401 0.0004 27 1 2.6804 -3.6911 0.7460 28 1 1.5446 -5.7507 0.0856 29 1 -1.5773 -7.8395 -3.1924 30 1 -2.6470 -7.7049 -1.7761 31 1 -3.2138 -4.8300 -3.5847 32 1 -6.4520 -6.4045 -5.8942 33 1 -5.7840 -8.6620 -5.1743 34 1 -1.2487 -3.4756 -2.2551 35 1 -0.1284 -1.4072 -1.5957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536546708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:49:30 Heat of formation + Delta-G solvation = -57.642980 kcal Electronic energy + Delta-G solvation = -22207.887229 eV Core-core repulsion = 18581.677803 eV Total energy + Delta-G solvation = -3626.209426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67536 -41.01439 -39.27086 -37.83881 -37.39211 -35.74992 -33.60953 -33.10800 -32.13590 -31.37888 -28.83744 -27.58483 -24.88999 -24.15794 -23.15829 -22.81187 -21.66550 -19.40308 -18.79643 -18.58002 -17.57253 -17.49803 -17.36936 -17.05896 -16.50470 -15.77587 -15.59758 -15.33250 -15.15159 -14.83662 -14.54758 -14.36204 -14.00821 -13.85122 -13.44335 -13.28101 -13.22871 -13.17646 -12.88486 -12.66795 -12.40706 -12.06056 -11.92055 -11.81686 -11.42832 -11.29570 -11.14505 -10.76150 -10.58203 -10.16612 -9.63170 -9.53100 -8.85423 -6.55354 -0.18142 -0.05655 0.22733 0.84327 1.13953 1.36235 1.41587 1.54783 1.57936 1.87238 2.14979 2.50207 2.67413 3.10526 3.57929 3.62416 3.78728 3.89122 4.08080 4.15600 4.24292 4.27323 4.36629 4.41796 4.63824 4.68666 4.86832 4.93144 4.98491 5.11469 5.21758 5.34096 5.43662 5.55942 5.80596 5.90447 5.96156 6.15237 6.49106 6.70310 6.71874 6.81914 6.96137 8.09431 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.003152 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.617113 B = 8881.400171 C =10722.727570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.459 4.459 8 H 0.093 0.907 9 C 0.106 3.894 10 C -0.250 4.250 11 C -0.021 4.021 12 C -0.289 4.289 13 C 0.525 3.475 14 O -0.564 6.564 15 O -0.356 6.356 16 C 0.120 3.880 17 C 0.130 3.870 18 C -0.157 4.157 19 C 0.001 3.999 20 Cl -0.047 7.047 21 C -0.154 4.154 22 C 0.123 3.877 23 N -0.494 5.494 24 C -0.038 4.038 25 C -0.202 4.202 26 H 0.299 0.701 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.118 0.882 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -5.211 -10.153 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.111 0.889 9 C 0.103 3.897 10 C -0.269 4.269 11 C -0.040 4.040 12 C -0.292 4.292 13 C 0.378 3.622 14 O -0.459 6.459 15 O -0.273 6.273 16 C 0.045 3.955 17 C -0.006 4.006 18 C -0.178 4.178 19 C -0.034 4.034 20 Cl -0.018 7.018 21 C -0.174 4.174 22 C -0.035 4.035 23 N -0.205 5.205 24 C -0.057 4.057 25 C -0.221 4.221 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.198 0.802 33 H 0.226 0.774 34 H 0.136 0.864 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.116 -6.067 -9.812 16.020 hybrid contribution 0.078 1.511 -0.023 1.513 sum -11.038 -4.556 -9.835 15.470 Atomic orbital electron populations 1.69767 1.09414 1.31977 1.30074 1.27015 0.95532 1.05084 0.90769 0.85056 0.79262 0.75012 0.79744 1.18388 1.18949 1.17734 1.20259 0.99018 0.92022 1.37189 0.88911 1.18193 0.90858 0.93155 0.87542 1.20871 1.05443 0.92324 1.08259 1.20511 0.92519 0.97724 0.93236 1.18390 1.05125 0.89855 1.15807 1.21275 0.76980 0.89526 0.74459 1.90700 1.66485 1.32405 1.56328 1.86468 1.43161 1.35278 1.62406 1.21321 0.92132 0.83763 0.98267 1.20530 0.95150 0.89021 0.95942 1.21924 0.97877 0.99199 0.98809 1.21499 0.96245 0.88160 0.97525 1.98412 1.92042 1.21258 1.90113 1.22524 1.01755 0.91345 1.01819 1.23451 0.91362 0.97682 0.91001 1.67228 1.07206 1.34423 1.11664 1.20764 0.97202 0.91481 0.96253 1.20992 1.00916 0.97187 1.03007 0.88919 0.86820 0.86927 0.88797 0.88932 0.83828 0.80153 0.77359 0.86415 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.97 10.99 21.87 0.24 -36.73 16 2 C 0.04 1.63 5.13 85.36 0.44 2.07 16 3 Si 0.99 33.52 29.60 68.60 2.03 35.55 16 4 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 5 H -0.27 -8.56 7.11 99.48 0.71 -7.85 16 6 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 7 C -0.46 -22.27 9.04 23.46 0.21 -22.05 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.11 5.35 5.57 -21.28 -0.12 5.24 16 10 C -0.25 -11.88 9.73 22.47 0.22 -11.66 16 11 C -0.02 -0.99 9.52 22.26 0.21 -0.78 16 12 C -0.29 -13.33 5.89 -19.94 -0.12 -13.45 16 13 C 0.53 22.48 7.89 70.27 0.55 23.04 16 14 O -0.56 -25.63 16.11 19.82 0.32 -25.31 16 15 O -0.36 -13.06 7.89 -56.90 -0.45 -13.51 16 16 C 0.12 3.66 6.02 71.24 0.43 4.09 16 17 C 0.13 3.52 6.78 42.53 0.29 3.81 16 18 C -0.16 -4.15 9.24 22.38 0.21 -3.95 16 19 C 0.00 0.01 6.37 22.54 0.14 0.15 16 20 Cl -0.05 -0.98 29.02 -2.72 -0.08 -1.06 16 21 C -0.15 -2.34 9.94 22.38 0.22 -2.12 16 22 C 0.12 1.93 11.18 84.66 0.95 2.88 16 23 N -0.49 -11.65 10.27 -183.95 -1.89 -13.54 16 24 C -0.04 -1.75 9.55 22.26 0.21 -1.54 16 25 C -0.20 -9.99 8.63 22.47 0.19 -9.80 16 26 H 0.30 12.43 8.29 -92.70 -0.77 11.66 16 27 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 28 H 0.11 4.90 7.63 -2.91 -0.02 4.88 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.14 4.17 6.98 -2.91 -0.02 4.15 16 32 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.12 4.84 7.59 -2.91 -0.02 4.82 16 35 H 0.11 5.66 6.20 -2.91 -0.02 5.65 16 Total: -1.00 -58.63 330.73 5.35 -53.28 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 1.14 Total: 25.37 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.04 Total: -24.07 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -1.65 Total: -50.27 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.13 Total: -38.82 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -58.63 5.35 -53.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536546708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.362 kcal (2) G-P(sol) polarization free energy of solvation -58.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds