Wall clock time and date at job start Fri Apr 10 2020 15:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81408 * 102.99870 * 2 1 4 4 H 1.09000 * 110.01436 * 306.39625 * 3 2 1 5 5 C 1.54272 * 110.07173 * 67.80960 * 3 2 1 6 6 C 1.54885 * 104.19777 * 142.91761 * 5 3 2 7 7 C 1.54890 * 102.74758 * 322.05795 * 6 5 3 8 8 H 1.09005 * 110.59952 * 279.21081 * 7 6 5 9 9 N 1.46496 * 110.49191 * 156.61921 * 7 6 5 10 10 C 1.34776 * 120.00200 * 90.21962 * 9 7 6 11 11 O 1.21286 * 119.99962 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00377 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.47316 * 180.02562 * 12 10 9 14 14 C 1.37636 * 120.12751 * 264.99986 * 13 12 10 15 15 C 1.38613 * 120.24970 * 179.97438 * 14 13 12 16 16 C 1.38659 * 120.49925 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.25113 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12642 * 84.97985 * 13 12 10 19 19 C 1.41391 * 120.24498 * 0.02562 * 18 13 12 20 20 H 1.08003 * 120.00127 * 334.58615 * 19 18 13 21 21 C 1.39947 * 120.00064 * 154.58397 * 19 18 13 22 22 N 1.30835 * 119.99707 * 342.83925 * 21 19 18 23 23 Si 1.86795 * 120.00151 * 162.84272 * 21 19 18 24 24 H 1.48498 * 109.47320 * 94.65207 * 23 21 19 25 25 H 1.48502 * 109.46987 * 214.65021 * 23 21 19 26 26 H 1.48495 * 109.47235 * 334.64567 * 23 21 19 27 27 C 1.53867 * 110.03241 * 184.99877 * 3 2 1 28 28 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47348 * 299.99856 * 1 2 3 30 30 H 1.08999 * 109.47545 * 59.99781 * 1 2 3 31 31 H 1.09005 * 110.48744 * 261.59727 * 5 3 2 32 32 H 1.09000 * 110.48388 * 24.23403 * 5 3 2 33 33 H 1.08997 * 110.75474 * 203.74433 * 6 5 3 34 34 H 1.09001 * 110.75743 * 80.36885 * 6 5 3 35 35 H 0.97004 * 120.00143 * 270.23377 * 9 7 6 36 36 H 1.08998 * 109.47650 * 60.00013 * 12 10 9 37 37 H 1.09006 * 109.47251 * 300.00296 * 12 10 9 38 38 H 1.08000 * 119.87655 * 359.97287 * 14 13 12 39 39 H 1.08004 * 119.74930 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.87231 * 179.72754 * 16 15 14 41 41 H 1.07996 * 120.12809 * 179.97438 * 17 16 15 42 42 H 0.96993 * 119.99547 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.03207 * 121.38724 * 27 3 2 44 44 H 1.08997 * 110.03744 * 359.95299 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7138 2.2678 -0.8244 5 6 1.8079 2.4066 1.3417 6 6 2.9271 3.4367 1.6334 7 6 4.2013 2.7049 1.1436 8 1 4.5515 1.9989 1.8966 9 7 5.2542 3.6703 0.8186 10 6 6.1315 4.0552 1.7665 11 8 6.0496 3.6020 2.8885 12 6 7.2142 5.0486 1.4324 13 6 8.0542 5.3070 2.6567 14 6 7.7763 6.3814 3.4709 15 6 8.5468 6.6212 4.5979 16 6 9.6049 5.7841 4.9181 17 6 9.9016 4.7047 4.1180 18 6 9.1251 4.4507 2.9720 19 6 9.4200 3.3440 2.1429 20 1 8.6436 2.9018 1.5361 21 6 10.7178 2.8216 2.1086 22 7 11.7205 3.5305 2.5601 23 14 11.0185 1.1122 1.4181 24 1 11.3955 1.2162 -0.0145 25 1 12.1183 0.4598 2.1731 26 1 9.7811 0.3015 1.5468 27 6 3.7438 1.9572 -0.1260 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.8445 2.9072 1.2446 32 1 1.7693 1.6523 2.1276 33 1 2.9891 3.6478 2.7009 34 1 2.7659 4.3533 1.0659 35 1 5.3198 4.0326 -0.0789 36 1 6.7607 5.9820 1.0989 37 1 7.8438 4.6466 0.6385 38 1 6.9548 7.0401 3.2308 39 1 8.3214 7.4664 5.2314 40 1 10.2014 5.9830 5.7962 41 1 10.7263 4.0543 4.3691 42 1 12.6200 3.1685 2.5359 43 1 3.9742 2.5496 -1.0115 44 1 4.2373 0.9873 -0.1863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776966254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:52:11 Heat of formation + Delta-G solvation = -36.815548 kcal Electronic energy + Delta-G solvation = -24150.120145 eV Core-core repulsion = 20771.212281 eV Total energy + Delta-G solvation = -3378.907864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.57770 -37.98570 -36.96736 -33.58245 -33.36756 -31.62473 -29.47294 -29.38594 -28.97768 -27.96074 -26.22868 -24.86372 -21.23821 -20.89838 -20.84474 -20.31427 -19.25079 -17.14136 -16.91832 -16.39100 -16.31118 -15.40028 -14.98102 -14.71484 -14.53781 -14.26100 -13.90445 -13.72506 -13.60764 -13.48011 -13.22309 -12.91418 -12.54547 -12.33433 -12.06035 -11.66241 -11.54096 -11.49368 -11.41846 -11.18240 -11.09746 -10.98670 -10.93048 -10.80639 -10.65402 -10.35806 -10.04841 -9.44033 -9.34186 -9.12972 -9.08557 -8.67307 -7.91954 -7.27100 -7.24918 -6.70367 -4.29577 1.43329 2.29640 2.82346 3.01181 3.10133 3.16105 3.30953 3.36846 3.65454 3.97501 4.25118 4.31220 4.69916 4.81531 4.82857 4.90515 5.12585 5.18840 5.21775 5.25490 5.36556 5.42816 5.55476 5.58616 5.78298 5.84075 5.92593 6.04037 6.09087 6.13574 6.28345 6.32842 6.47678 6.55240 6.84331 6.86957 7.12768 7.34059 7.46823 7.68513 7.92943 8.00531 8.12241 8.17683 8.35956 8.69288 8.91439 8.96159 9.06197 10.23860 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003347 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.820258 B = 8362.921023 C = 9872.769274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.259 6.259 3 C -0.052 4.052 4 H 0.089 0.911 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.146 3.854 8 H 0.097 0.903 9 N -0.740 5.740 10 C 0.515 3.485 11 O -0.519 6.519 12 C -0.071 4.071 13 C -0.181 4.181 14 C -0.081 4.081 15 C -0.241 4.241 16 C -0.107 4.107 17 C -0.161 4.161 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.109 4.109 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.081 0.919 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 -2.679 -8.223 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.032 6.032 3 C -0.181 4.181 4 H 0.108 0.892 5 C -0.159 4.159 6 C -0.171 4.171 7 C 0.039 3.961 8 H 0.115 0.885 9 N -0.393 5.393 10 C 0.303 3.697 11 O -0.392 6.392 12 C -0.111 4.111 13 C -0.183 4.183 14 C -0.099 4.099 15 C -0.260 4.260 16 C -0.125 4.125 17 C -0.180 4.180 18 C 0.126 3.874 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.420 5.420 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.148 4.148 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.495 -3.927 -7.380 18.492 hybrid contribution -0.654 0.394 -0.800 1.105 sum -17.149 -3.533 -8.179 19.325 Atomic orbital electron populations 1.23362 0.94750 1.06288 1.04810 1.87080 1.06902 1.11382 1.97845 1.23756 0.99864 0.93218 1.01296 0.89217 1.22749 0.98737 0.98881 0.95541 1.22899 0.93939 0.97864 1.02405 1.21658 0.87179 0.90911 0.96303 0.88483 1.46188 1.32188 1.46697 1.14260 1.21253 0.81531 0.82266 0.84656 1.90681 1.72192 1.54897 1.21432 1.20268 0.94521 0.96640 0.99646 1.19043 1.02230 0.98865 0.98149 1.20290 0.97585 0.96868 0.95191 1.20298 1.01662 1.03094 1.00973 1.20669 0.97010 0.96422 0.98438 1.21287 1.02460 0.98842 0.95388 1.17336 0.89296 0.90225 0.90501 1.19467 0.94583 1.11959 1.22505 0.90782 1.25881 0.95911 0.98378 0.93849 1.69832 1.00328 1.36026 1.35837 0.86417 0.79114 0.82699 0.79248 1.19625 1.20030 1.18461 1.22231 0.92074 1.01746 0.98739 0.88312 0.90457 0.90711 0.91324 0.89932 0.90505 0.91096 0.77139 0.90685 0.88614 0.89829 0.89720 0.89626 0.86579 0.91007 0.90004 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.64 101.05 1.08 0.24 16 2 S -0.26 -2.60 21.34 -107.50 -2.29 -4.89 16 3 C -0.05 -0.47 3.41 -25.61 -0.09 -0.56 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -1.09 6.26 -25.07 -0.16 -1.25 16 6 C -0.13 -1.47 6.58 -24.74 -0.16 -1.63 16 7 C 0.15 1.88 3.22 -66.27 -0.21 1.67 16 8 H 0.10 1.56 7.55 -51.93 -0.39 1.16 16 9 N -0.74 -10.38 5.16 -52.20 -0.27 -10.65 16 10 C 0.52 9.88 7.46 -10.99 -0.08 9.80 16 11 O -0.52 -12.36 15.68 5.55 0.09 -12.27 16 12 C -0.07 -1.38 5.18 -29.04 -0.15 -1.53 16 13 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 14 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 15 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 16 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 17 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16 18 C 0.13 3.48 5.57 -106.82 -0.59 2.88 16 19 C -0.46 -12.09 8.15 -37.74 -0.31 -12.40 16 20 H 0.07 1.91 6.66 -52.48 -0.35 1.56 16 21 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 22 N -0.79 -20.70 10.98 55.55 0.61 -20.09 16 23 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.11 -1.11 6.21 -25.61 -0.16 -1.27 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.39 4.26 8.37 -40.82 -0.34 3.91 16 36 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.10 1.83 7.05 -51.93 -0.37 1.46 16 38 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 39 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.23 6.20 -52.49 -0.33 2.90 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 43 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 44 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -31.16 371.25 -10.96 -42.12 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.76 Total: 9.23 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.90 Total: -23.10 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.34 Total: -30.75 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.29 Total: -4.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.16 -10.96 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776966254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.302 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds