Wall clock time and date at job start Fri Apr 10 2020 15:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99915 * 2 1 4 4 O 1.20822 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00124 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47240 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.47347 * 305.00847 * 6 5 3 8 8 N 1.46903 * 109.46863 * 65.00060 * 6 5 3 9 9 C 1.46900 * 111.00393 * 222.44099 * 8 6 5 10 10 C 1.50696 * 109.47507 * 181.02770 * 9 8 6 11 11 C 1.38302 * 119.92844 * 89.99780 * 10 9 8 12 12 C 1.38100 * 120.06840 * 179.97438 * 11 10 9 13 13 C 1.38882 * 119.92993 * 0.03277 * 12 11 10 14 14 O 1.35751 * 120.07155 * 180.02562 * 13 12 11 15 15 C 1.34831 * 116.99616 * 358.02550 * 14 13 12 16 16 H 1.07999 * 120.00427 * 354.62230 * 15 14 13 17 17 C 1.38655 * 120.00086 * 174.62444 * 15 14 13 18 18 N 1.31557 * 119.99817 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47211 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47192 * 119.99813 * 19 17 15 22 22 H 1.48495 * 109.47479 * 240.00216 * 19 17 15 23 23 C 1.38883 * 119.86054 * 0.26857 * 13 12 11 24 24 C 1.38095 * 119.93005 * 359.44766 * 23 13 12 25 25 C 1.52993 * 109.47088 * 185.00068 * 6 5 3 26 26 C 1.52998 * 117.50269 * 252.64760 * 25 6 5 27 27 C 1.53006 * 117.50026 * 183.99001 * 25 6 5 28 28 H 1.09004 * 109.47483 * 59.99675 * 1 2 3 29 29 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47047 * 299.99597 * 1 2 3 31 31 H 1.09000 * 109.46814 * 60.00806 * 5 3 2 32 32 H 1.08999 * 109.46818 * 300.00834 * 5 3 2 33 33 H 1.00896 * 111.00272 * 346.40572 * 8 6 5 34 34 H 1.09006 * 109.46635 * 61.02725 * 9 8 6 35 35 H 1.08997 * 109.46826 * 301.03454 * 9 8 6 36 36 H 1.07999 * 119.96884 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.03536 * 180.02562 * 12 11 10 38 38 H 0.96998 * 120.00302 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03012 * 179.73016 * 23 13 12 40 40 H 1.07999 * 119.96393 * 180.27470 * 24 23 13 41 41 H 1.09003 * 115.54766 * 38.32531 * 25 6 5 42 42 H 1.09005 * 117.49724 * 0.02562 * 26 25 6 43 43 H 1.08997 * 117.49721 * 145.01810 * 26 25 6 44 44 H 1.09001 * 117.49770 * 214.98392 * 27 25 6 45 45 H 1.09001 * 117.49720 * 0.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5381 3.2579 -0.8407 8 7 3.5771 3.3773 1.2564 9 6 3.0287 4.7175 1.0096 10 6 2.6299 5.3462 2.3198 11 6 3.5449 6.1033 3.0287 12 6 3.1823 6.6812 4.2294 13 6 1.8976 6.5010 4.7252 14 8 1.5380 7.0682 5.9050 15 6 2.4877 7.7605 6.5658 16 1 3.5028 7.7718 6.1972 17 6 2.1611 8.4581 7.7188 18 7 0.9248 8.4439 8.1682 19 14 3.4769 9.4167 8.6348 20 1 4.7756 9.2728 7.9293 21 1 3.0984 10.8518 8.6861 22 1 3.6026 8.8882 10.0168 23 6 0.9831 5.7350 4.0140 24 6 1.3499 5.1646 2.8111 25 6 5.5227 2.8238 -0.1240 26 6 6.3130 3.2332 1.1204 27 6 6.1645 4.2107 -0.0481 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 2.9121 2.7993 1.7480 34 1 2.1544 4.6389 0.3633 35 1 3.7844 5.3357 0.5250 36 1 4.5437 6.2433 2.6424 37 1 3.8971 7.2726 4.7823 38 1 0.6962 8.9322 8.9745 39 1 -0.0154 5.5894 4.3992 40 1 0.6378 4.5725 2.2555 41 1 5.9793 2.0939 -0.7926 42 1 5.7481 3.4440 2.0286 43 1 7.2895 2.7729 1.2705 44 1 7.0434 4.3930 -0.6664 45 1 5.5019 5.0648 0.0914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754517543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:53:57 Heat of formation + Delta-G solvation = -59.827565 kcal Electronic energy + Delta-G solvation = -26467.677150 eV Core-core repulsion = 22645.018539 eV Total energy + Delta-G solvation = -3822.658611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87207 -39.10859 -38.46476 -36.70755 -36.58307 -34.34440 -32.41472 -31.78090 -30.08754 -29.03942 -27.78135 -25.58239 -24.85707 -23.70972 -22.22415 -21.87647 -21.18792 -20.34812 -19.75773 -17.91904 -17.85917 -17.02934 -16.83711 -16.73595 -16.14824 -15.27781 -14.94471 -14.61839 -14.46158 -14.19345 -13.96047 -13.67147 -13.52622 -13.42430 -13.20548 -12.81035 -12.60493 -12.45945 -12.32511 -12.02784 -11.85372 -11.60019 -11.45613 -11.24781 -11.16496 -11.08316 -10.80041 -10.72278 -10.56639 -10.38472 -10.33355 -10.22237 -9.94798 -9.27628 -8.79967 -8.28194 -8.08728 -7.10985 -6.41558 -3.99988 1.93013 2.30318 2.36644 2.41784 3.14635 3.16189 3.21804 3.81748 3.99966 4.24233 4.35128 4.53776 4.72141 4.82632 4.86919 4.92075 4.97135 5.06490 5.14265 5.16329 5.19576 5.28528 5.32667 5.45301 5.54509 5.60409 5.68993 5.75853 5.84722 5.93220 5.96228 6.04368 6.12585 6.27449 6.30297 6.50589 6.53481 6.78936 6.98933 7.08137 7.17578 7.29630 7.43572 7.48018 7.49918 7.56046 7.91113 8.04321 9.04583 9.75987 10.76834 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002872 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.010657 B = 9747.509430 C =11087.015748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.455 3.545 4 O -0.500 6.500 5 C -0.122 4.122 6 C 0.126 3.874 7 H 0.064 0.936 8 N -0.670 5.670 9 C 0.118 3.882 10 C -0.181 4.181 11 C -0.050 4.050 12 C -0.236 4.236 13 C 0.156 3.844 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.195 4.195 24 C -0.066 4.066 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.178 4.178 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.341 0.659 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -15.427 -17.967 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.298 3.702 4 O -0.387 6.387 5 C -0.160 4.160 6 C 0.015 3.985 7 H 0.082 0.918 8 N -0.302 5.302 9 C -0.010 4.010 10 C -0.182 4.182 11 C -0.069 4.069 12 C -0.255 4.255 13 C 0.102 3.898 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.215 4.215 24 C -0.084 4.084 25 C -0.174 4.174 26 C -0.194 4.194 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.223 -14.793 -17.493 23.740 hybrid contribution -0.413 0.271 0.047 0.496 sum 5.810 -14.522 -17.446 23.431 Atomic orbital electron populations 1.23279 0.76120 1.03676 1.02785 1.86497 1.23642 1.33569 1.84129 1.23923 0.92347 0.81481 0.72456 1.90727 1.67219 1.36069 1.44647 1.21790 0.87202 1.00365 1.06623 1.20820 0.93656 0.90485 0.93527 0.91788 1.60727 1.45705 1.04298 1.19485 1.20748 0.97322 0.88645 0.94244 1.19136 0.94664 1.05835 0.98579 1.20565 0.97495 0.95158 0.93668 1.21160 0.97538 1.07860 0.98992 1.19403 0.92444 0.91589 0.86382 1.83988 1.38576 1.59059 1.26704 1.21374 0.90082 1.28411 1.06755 0.89029 1.25286 0.97495 0.97186 0.96619 1.70050 1.17539 1.40047 1.22294 0.85655 0.79609 0.79000 0.79218 1.19078 1.20191 1.20173 1.20161 0.99602 1.04689 0.97024 1.20516 0.95345 0.97942 0.94646 1.22261 0.93153 0.99002 1.02936 1.22951 0.99945 1.02182 0.94342 1.22933 1.02332 0.93357 1.02892 0.91938 0.88145 0.91574 0.87136 0.86670 0.84027 0.94406 0.91385 0.87589 0.85670 0.92138 0.86804 0.87466 0.88149 0.86353 0.90155 0.89699 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.42 10.57 -39.25 -0.41 -3.83 16 3 C 0.46 4.67 7.38 36.01 0.27 4.94 16 4 O -0.50 -6.59 13.98 -18.75 -0.26 -6.85 16 5 C -0.12 -0.95 5.26 -27.88 -0.15 -1.10 16 6 C 0.13 1.23 2.08 -67.72 -0.14 1.09 16 7 H 0.06 0.70 7.43 -51.93 -0.39 0.32 16 8 N -0.67 -8.31 4.24 -108.00 -0.46 -8.77 16 9 C 0.12 1.70 5.26 -4.98 -0.03 1.67 16 10 C -0.18 -3.20 5.41 -104.58 -0.57 -3.76 16 11 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 12 C -0.24 -5.27 9.15 -39.39 -0.36 -5.63 16 13 C 0.16 3.87 6.65 -39.10 -0.26 3.60 16 14 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 15 C -0.39 -11.10 9.47 30.89 0.29 -10.80 16 16 H 0.09 2.42 5.23 -52.49 -0.27 2.15 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 19 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 23 C -0.20 -4.30 9.99 -39.40 -0.39 -4.70 16 24 C -0.07 -1.24 9.69 -39.61 -0.38 -1.63 16 25 C -0.15 -1.39 5.69 -90.62 -0.52 -1.90 16 26 C -0.16 -1.61 9.86 -26.70 -0.26 -1.87 16 27 C -0.18 -1.77 10.06 -26.69 -0.27 -2.04 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.34 4.57 6.96 -39.29 -0.27 4.29 16 34 H 0.04 0.57 7.46 -51.93 -0.39 0.19 16 35 H 0.07 0.93 5.84 -51.93 -0.30 0.63 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.13 2.81 5.65 -52.49 -0.30 2.51 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.12 1.48 7.00 -51.93 -0.36 1.11 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 1.08 5.83 -51.93 -0.30 0.77 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -32.07 373.77 -8.32 -40.39 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.37 Total: 8.99 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.18 Total: -21.16 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.30 Total: -33.73 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.68 Total: -15.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.07 -8.32 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754517543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.438 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds