Wall clock time and date at job start Fri Apr 10 2020 15:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39724 * 120.43593 * 17.08769 * 3 2 1 5 5 C 1.39651 * 118.31874 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.44708 * 179.97438 * 5 4 3 7 7 N 5.93198 * 145.99465 * 17.08131 * 2 1 3 8 8 C 1.40960 * 119.10586 * 359.97438 * 5 4 3 9 9 S 1.76204 * 119.60332 * 179.97438 * 8 5 4 10 10 C 1.80999 * 99.99629 * 179.97438 * 9 8 5 11 11 C 1.52999 * 109.46869 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 S 1.80999 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00283 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47171 * 90.00332 * 18 16 14 20 20 H 1.48507 * 109.46902 * 209.99751 * 18 16 14 21 21 H 1.48489 * 109.47380 * 329.99927 * 18 16 14 22 22 N 1.32439 * 120.78581 * 359.74819 * 8 5 4 23 23 C 1.32330 * 121.84605 * 0.52402 * 22 8 5 24 24 N 1.38025 * 119.59305 * 179.75270 * 23 22 8 25 25 H 1.08007 * 120.84083 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.47373 * 299.99911 * 10 9 8 27 27 H 1.08996 * 109.47221 * 60.00199 * 10 9 8 28 28 H 1.08996 * 109.47473 * 300.00367 * 11 10 9 29 29 H 1.09006 * 109.46966 * 60.00779 * 11 10 9 30 30 H 1.08996 * 109.47296 * 300.00597 * 12 11 10 31 31 H 1.09002 * 109.47281 * 60.00373 * 12 11 10 32 32 H 0.97001 * 119.99545 * 180.02562 * 17 16 14 33 33 H 0.96996 * 120.00314 * 179.72714 * 24 23 22 34 34 H 0.97009 * 120.00077 * 359.45141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2764 -1.1506 -0.3540 5 6 4.6719 -1.1005 -0.3393 6 6 5.4432 -2.2539 -0.6935 7 7 6.0535 -3.1712 -0.9745 8 6 5.3111 0.1008 0.0287 9 16 7.0713 0.1784 0.0523 10 6 7.3030 1.8950 0.5775 11 6 8.7990 2.2018 0.6719 12 6 8.9950 3.6530 1.1152 13 16 10.7647 4.0162 1.2262 14 6 10.6997 5.6999 1.7413 15 1 9.7451 6.1829 1.8896 16 6 11.8754 6.4057 1.9566 17 7 13.0389 5.8172 1.7754 18 14 11.8065 8.1905 2.5035 19 1 11.7894 8.2534 3.9870 20 1 12.9995 8.9116 1.9913 21 1 10.5761 8.8255 1.9669 22 7 4.6044 1.1730 0.3527 23 6 3.2811 1.1624 0.3555 24 7 2.5911 2.3053 0.7059 25 1 2.7577 -2.0563 -0.6319 26 1 6.8399 2.5628 -0.1488 27 1 6.8401 2.0421 1.5532 28 1 9.2618 1.5339 1.3984 29 1 9.2623 2.0547 -0.3038 30 1 8.5323 4.3206 0.3884 31 1 8.5316 3.8007 2.0907 32 1 13.8604 6.3104 1.9262 33 1 1.6211 2.3053 0.7061 34 1 3.0762 3.1073 0.9558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:53:41 Heat of formation + Delta-G solvation = 78.393653 kcal Electronic energy + Delta-G solvation = -19509.619987 eV Core-core repulsion = 16273.661491 eV Total energy + Delta-G solvation = -3235.958496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01721 -37.34810 -36.86424 -35.36289 -34.49803 -33.33750 -32.47444 -30.65632 -27.31096 -25.76060 -25.44705 -24.30198 -21.57012 -21.00594 -18.94706 -18.55791 -17.64086 -17.53754 -16.11082 -16.03664 -15.76740 -15.23182 -14.85584 -14.75700 -14.16926 -14.05052 -14.00928 -13.85220 -13.60306 -13.40199 -13.18144 -13.11810 -12.76490 -12.70219 -11.89725 -11.87219 -11.67353 -11.11567 -11.03388 -10.74276 -10.71443 -10.61003 -10.56707 -10.38501 -9.63541 -9.10566 -8.97885 -8.37999 -7.99811 -6.59407 -6.27509 -3.98677 -0.08597 0.34966 0.96762 1.78410 2.07673 2.17985 2.38861 2.71172 2.83988 3.18058 3.18870 3.26099 3.29421 3.37536 3.49897 3.59877 3.88292 4.17017 4.23946 4.53950 4.95030 4.96828 5.04580 5.08989 5.11767 5.32689 5.39761 5.51319 5.67464 5.87603 6.14352 6.27574 6.36899 6.53593 6.58090 6.93566 7.19361 7.31005 7.55837 8.31629 9.18834 10.80599 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.002380 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.180842 B =11764.016111 C =13241.448369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.262 3.738 3 C -0.172 4.172 4 C 0.084 3.916 5 C -0.131 4.131 6 C 0.260 3.740 7 N -0.401 5.401 8 C 0.242 3.758 9 S -0.015 6.015 10 C -0.098 4.098 11 C -0.090 4.090 12 C -0.108 4.108 13 S -0.129 6.129 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 N -0.543 5.543 23 C 0.495 3.505 24 N -0.823 5.823 25 H 0.158 0.842 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 33 H 0.414 0.586 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.145 -10.524 -3.189 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.053 4.053 3 C -0.187 4.187 4 C 0.053 3.947 5 C -0.147 4.147 6 C -0.056 4.056 7 N -0.077 5.077 8 C -0.014 4.014 9 S 0.232 5.768 10 C -0.248 4.248 11 C -0.130 4.130 12 C -0.258 4.258 13 S 0.099 5.901 14 C -0.665 4.665 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.504 5.504 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 N -0.266 5.266 23 C 0.246 3.754 24 N -0.362 5.362 25 H 0.175 0.825 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.445 -12.594 -3.839 23.483 hybrid contribution -2.452 2.903 0.904 3.906 sum -21.897 -9.692 -2.935 24.125 Atomic orbital electron populations 1.81344 1.11512 1.06355 1.10033 1.25127 0.91905 0.94722 0.93537 1.15865 0.85415 0.96031 1.21380 1.21277 0.90991 0.96441 0.85970 1.15880 0.91450 0.90124 1.17213 1.24960 0.94016 0.92732 0.93885 1.81329 1.07009 1.10127 1.09218 1.23421 1.00067 0.88810 0.89119 1.86434 0.92081 1.18382 1.79900 1.23827 1.01965 0.92939 1.06113 1.21151 0.91291 0.97195 1.03373 1.23226 1.03665 0.96303 1.02611 1.84696 0.99359 1.16661 1.89371 1.22668 0.95333 0.95709 1.52821 0.90880 1.25024 0.94628 0.99161 0.94989 1.70019 0.97353 1.36982 1.46052 0.86159 0.77876 0.82569 0.78883 1.20257 1.20746 1.19685 1.67777 1.04919 1.27708 1.26174 1.18171 0.87714 0.85332 0.84173 1.42329 1.09791 1.12082 1.72007 0.82472 0.88204 0.88221 0.90458 0.90464 0.91764 0.91767 0.92241 0.75513 0.75121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -3.75 18.54 41.84 0.78 -2.97 16 2 C 0.26 1.79 14.08 -22.47 -0.32 1.47 16 3 C -0.17 -1.00 5.77 -106.42 -0.61 -1.62 16 4 C 0.08 0.45 9.61 -38.50 -0.37 0.08 16 5 C -0.13 -1.00 5.77 -106.41 -0.61 -1.61 16 6 C 0.26 2.50 14.28 -22.44 -0.32 2.18 16 7 N -0.40 -4.80 18.54 41.88 0.78 -4.02 16 8 C 0.24 2.13 7.02 -16.26 -0.11 2.02 16 9 S -0.01 -0.15 21.03 -107.50 -2.26 -2.41 16 10 C -0.10 -1.08 4.83 37.16 0.18 -0.90 16 11 C -0.09 -1.28 5.22 -26.73 -0.14 -1.42 16 12 C -0.11 -1.95 5.67 37.16 0.21 -1.74 16 13 S -0.13 -3.21 21.44 -107.50 -2.30 -5.52 16 14 C -0.52 -14.26 9.50 30.94 0.29 -13.97 16 15 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 16 C 0.07 1.97 5.49 -17.43 -0.10 1.87 16 17 N -0.87 -25.35 13.22 55.49 0.73 -24.62 16 18 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 N -0.54 -4.44 9.11 -10.62 -0.10 -4.54 16 23 C 0.49 3.19 7.75 -155.36 -1.20 1.98 16 24 N -0.82 -3.50 8.96 31.27 0.28 -3.22 16 25 H 0.16 0.44 8.06 -52.48 -0.42 0.01 16 26 H 0.10 1.05 8.12 -51.92 -0.42 0.63 16 27 H 0.10 1.05 8.12 -51.92 -0.42 0.63 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 31 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.41 1.31 7.63 -40.82 -0.31 1.00 16 34 H 0.42 1.42 8.95 -40.82 -0.37 1.06 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -32.36 346.25 -8.18 -40.54 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -3.18 Total: -2.69 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.10 Total: -11.65 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 2.47 Total: -39.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -4.57 Total: -7.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.36 -8.18 -40.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.936 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds