Wall clock time and date at job start Fri Apr 10 2020 15:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39724 * 120.43593 * 17.08769 * 3 2 1 5 5 C 1.39651 * 118.31874 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.44708 * 179.97438 * 5 4 3 7 7 N 5.93198 * 145.99465 * 17.08131 * 2 1 3 8 8 C 1.40960 * 119.10586 * 359.97438 * 5 4 3 9 9 S 1.76204 * 119.60332 * 179.97438 * 8 5 4 10 10 C 1.80999 * 99.99629 * 179.97438 * 9 8 5 11 11 C 1.52999 * 109.46869 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 S 1.80999 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00283 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47171 * 90.00332 * 18 16 14 20 20 H 1.48507 * 109.46902 * 209.99751 * 18 16 14 21 21 H 1.48489 * 109.47380 * 329.99927 * 18 16 14 22 22 N 1.32439 * 120.78581 * 359.74819 * 8 5 4 23 23 C 1.32330 * 121.84605 * 0.52402 * 22 8 5 24 24 N 1.38025 * 119.59305 * 179.75270 * 23 22 8 25 25 H 1.08007 * 120.84083 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.47373 * 299.99911 * 10 9 8 27 27 H 1.08996 * 109.47221 * 60.00199 * 10 9 8 28 28 H 1.08996 * 109.47473 * 300.00367 * 11 10 9 29 29 H 1.09006 * 109.46966 * 60.00779 * 11 10 9 30 30 H 1.08996 * 109.47296 * 300.00597 * 12 11 10 31 31 H 1.09002 * 109.47281 * 60.00373 * 12 11 10 32 32 H 0.97001 * 119.99545 * 180.02562 * 17 16 14 33 33 H 0.96996 * 120.00314 * 179.72714 * 24 23 22 34 34 H 0.97009 * 120.00077 * 359.45141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2764 -1.1506 -0.3540 5 6 4.6719 -1.1005 -0.3393 6 6 5.4432 -2.2539 -0.6935 7 7 6.0535 -3.1712 -0.9745 8 6 5.3111 0.1008 0.0287 9 16 7.0713 0.1784 0.0523 10 6 7.3030 1.8950 0.5775 11 6 8.7990 2.2018 0.6719 12 6 8.9950 3.6530 1.1152 13 16 10.7647 4.0162 1.2262 14 6 10.6997 5.6999 1.7413 15 1 9.7451 6.1829 1.8896 16 6 11.8754 6.4057 1.9566 17 7 13.0389 5.8172 1.7754 18 14 11.8065 8.1905 2.5035 19 1 11.7894 8.2534 3.9870 20 1 12.9995 8.9116 1.9913 21 1 10.5761 8.8255 1.9669 22 7 4.6044 1.1730 0.3527 23 6 3.2811 1.1624 0.3555 24 7 2.5911 2.3053 0.7059 25 1 2.7577 -2.0563 -0.6319 26 1 6.8399 2.5628 -0.1488 27 1 6.8401 2.0421 1.5532 28 1 9.2618 1.5339 1.3984 29 1 9.2623 2.0547 -0.3038 30 1 8.5323 4.3206 0.3884 31 1 8.5316 3.8007 2.0907 32 1 13.8604 6.3104 1.9262 33 1 1.6211 2.3053 0.7061 34 1 3.0762 3.1073 0.9558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:53:40 Heat of formation + Delta-G solvation = 59.110970 kcal Electronic energy + Delta-G solvation = -19510.456147 eV Core-core repulsion = 16273.661491 eV Total energy + Delta-G solvation = -3236.794656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.046 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58903 -38.02272 -37.54713 -35.91247 -35.68578 -34.56574 -33.93266 -31.22224 -28.58113 -27.57396 -26.29117 -24.86923 -22.77963 -21.63544 -19.61994 -19.45824 -19.11725 -18.23705 -16.94444 -16.86583 -16.61663 -16.53984 -16.11143 -16.05551 -15.23159 -14.90378 -14.75429 -14.54511 -14.50289 -14.31821 -14.06696 -13.93261 -13.90650 -13.54102 -13.34895 -13.28142 -12.91629 -12.73052 -12.39295 -12.30418 -11.88166 -11.60639 -11.37434 -11.19145 -11.11601 -10.98483 -10.28171 -9.55485 -8.72434 -8.63146 -8.34625 -6.10343 -0.67942 -0.17186 0.21759 0.96014 1.34783 1.41737 1.50569 1.51545 1.57427 1.65824 1.80417 2.19598 2.22285 2.31103 2.70164 2.77215 2.97497 3.00103 3.34270 3.37984 3.66037 3.94153 4.00074 4.08181 4.22719 4.44513 4.47250 4.55474 4.72399 4.86593 4.92891 5.07136 5.25510 5.43351 5.82334 6.09510 6.21188 6.39383 6.49454 6.82723 7.08106 8.74563 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.002380 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.180842 B =11764.016111 C =13241.448369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.287 3.713 3 C -0.164 4.164 4 C 0.106 3.894 5 C -0.137 4.137 6 C 0.282 3.718 7 N -0.448 5.448 8 C 0.244 3.756 9 S -0.039 6.039 10 C -0.083 4.083 11 C -0.081 4.081 12 C -0.081 4.081 13 S -0.201 6.201 14 C -0.534 4.534 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.993 3.007 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.261 1.261 22 N -0.553 5.553 23 C 0.495 3.505 24 N -0.810 5.810 25 H 0.188 0.812 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.270 0.730 33 H 0.421 0.579 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.667 -9.849 -2.977 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.028 4.028 3 C -0.179 4.179 4 C 0.076 3.924 5 C -0.153 4.153 6 C -0.033 4.033 7 N -0.124 5.124 8 C -0.013 4.013 9 S 0.207 5.793 10 C -0.233 4.233 11 C -0.121 4.121 12 C -0.232 4.232 13 S 0.027 5.973 14 C -0.682 4.682 15 H 0.094 0.906 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.815 3.185 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.185 1.185 22 N -0.277 5.277 23 C 0.245 3.755 24 N -0.349 5.349 25 H 0.205 0.795 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -22.007 -11.899 -3.619 25.279 hybrid contribution -1.831 2.659 0.828 3.333 sum -23.838 -9.240 -2.791 25.718 Atomic orbital electron populations 1.81391 1.12531 1.07479 1.11252 1.25019 0.91643 0.93652 0.92471 1.15789 0.84815 0.96040 1.21224 1.21519 0.89864 0.97223 0.83842 1.15816 0.92076 0.89031 1.18351 1.25167 0.93139 0.92379 0.92617 1.81352 1.08309 1.11682 1.11073 1.23170 0.98903 0.89462 0.89752 1.86519 0.94395 1.17577 1.80789 1.23542 0.99152 0.93762 1.06891 1.20996 0.93910 0.94417 1.02784 1.23133 0.97881 0.98890 1.03279 1.84730 1.06567 1.16453 1.89508 1.23036 0.95703 0.96688 1.52739 0.90564 1.26070 0.94139 1.04070 0.94872 1.70162 0.98129 1.38952 1.47240 0.85026 0.78277 0.76547 0.78637 1.19387 1.20269 1.18489 1.67731 1.05654 1.27496 1.26776 1.18273 0.87292 0.86034 0.83872 1.42378 1.10198 1.11691 1.70649 0.79522 0.87435 0.87433 0.90902 0.90922 0.91186 0.91157 0.92079 0.74689 0.74425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.14 18.54 19.01 0.35 -6.78 16 2 C 0.29 3.12 14.08 88.33 1.24 4.37 16 3 C -0.16 -1.41 5.77 -21.03 -0.12 -1.53 16 4 C 0.11 0.79 9.61 22.97 0.22 1.01 16 5 C -0.14 -1.79 5.77 -21.02 -0.12 -1.91 16 6 C 0.28 5.09 14.28 88.32 1.26 6.35 16 7 N -0.45 -10.52 18.54 19.02 0.35 -10.17 16 8 C 0.24 3.83 7.02 85.27 0.60 4.43 16 9 S -0.04 -0.77 21.03 -56.49 -1.19 -1.96 16 10 C -0.08 -1.70 4.83 71.98 0.35 -1.36 16 11 C -0.08 -2.26 5.22 30.59 0.16 -2.10 16 12 C -0.08 -2.91 5.67 71.98 0.41 -2.50 16 13 S -0.20 -10.24 21.44 -56.49 -1.21 -11.45 16 14 C -0.53 -29.67 9.50 67.96 0.65 -29.02 16 15 H 0.08 4.03 7.80 -2.91 -0.02 4.01 16 16 C 0.01 0.74 5.49 84.86 0.47 1.20 16 17 N -0.91 -53.95 13.22 21.65 0.29 -53.66 16 18 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 N -0.55 -7.71 9.11 -187.51 -1.71 -9.42 16 23 C 0.50 4.99 7.75 133.84 1.04 6.02 16 24 N -0.81 -4.68 8.96 -54.97 -0.49 -5.17 16 25 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 26 H 0.11 2.05 8.12 -2.40 -0.02 2.03 16 27 H 0.11 2.04 8.12 -2.40 -0.02 2.02 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.07 2.43 8.14 -2.40 -0.02 2.41 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.42 1.53 7.63 -92.71 -0.71 0.83 16 34 H 0.42 1.76 8.95 -92.70 -0.83 0.93 16 Total: -1.00 -71.12 346.25 4.22 -66.90 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -0.35 Total: 2.03 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 6.15 Total: -15.04 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.21 Total: -85.21 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -2.40 Total: -13.40 kcal Total: -71.12 4.22 -66.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.014 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds