Wall clock time and date at job start Fri Apr 10 2020 15:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86791 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47463 * 240.00386 * 3 2 1 5 5 H 1.48502 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47420 * 120.00011 * 3 2 1 7 7 C 1.37886 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.46030 * 180.02562 * 9 7 2 11 11 C 1.53202 * 109.31092 * 181.36996 * 10 9 7 12 12 N 1.46919 * 108.77387 * 305.36507 * 11 10 9 13 13 C 1.34780 * 120.63001 * 233.58141 * 12 11 10 14 14 O 1.21594 * 119.99887 * 354.94307 * 13 12 11 15 15 N 1.34773 * 120.00324 * 174.93754 * 13 12 11 16 16 C 1.46501 * 120.00479 * 185.39403 * 15 13 12 17 17 C 1.52997 * 112.84740 * 65.55839 * 16 15 13 18 18 F 1.39903 * 109.47428 * 283.60969 * 17 16 15 19 19 F 1.39901 * 109.46940 * 163.60895 * 17 16 15 20 20 F 1.39899 * 109.47167 * 43.61279 * 17 16 15 21 21 C 1.53776 * 113.69165 * 196.83197 * 16 15 13 22 22 C 1.53778 * 87.08274 * 89.12637 * 21 16 15 23 23 C 1.53782 * 113.61274 * 294.36918 * 16 15 13 24 24 C 1.46928 * 118.74111 * 53.86395 * 12 11 10 25 25 C 1.53041 * 109.44740 * 300.06264 * 9 7 2 26 26 H 0.97003 * 120.00338 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46277 * 60.02501 * 9 7 2 28 28 H 1.08998 * 109.49890 * 61.42255 * 10 9 7 29 29 H 1.09000 * 109.50032 * 301.31977 * 10 9 7 30 30 H 1.09003 * 109.58289 * 185.57411 * 11 10 9 31 31 H 1.08993 * 109.70124 * 65.22326 * 11 10 9 32 32 H 0.97000 * 119.99587 * 5.39493 * 15 13 12 33 33 H 1.09001 * 113.61401 * 203.67397 * 21 16 15 34 34 H 1.08999 * 113.61585 * 334.57697 * 21 16 15 35 35 H 1.09001 * 113.61126 * 270.88558 * 22 21 16 36 36 H 1.09000 * 113.68992 * 139.98765 * 22 21 16 37 37 H 1.09007 * 113.61525 * 25.34338 * 23 16 15 38 38 H 1.09000 * 113.61369 * 156.24769 * 23 16 15 39 39 H 1.08995 * 109.58880 * 65.92286 * 24 12 11 40 40 H 1.09000 * 109.58280 * 186.35030 * 24 12 11 41 41 H 1.09003 * 109.49781 * 298.57099 * 25 9 7 42 42 H 1.08999 * 109.49993 * 58.66866 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4765 -4.9867 -0.0351 12 7 0.5224 -5.0087 1.0819 13 6 0.5115 -6.0349 1.9556 14 8 1.2319 -6.9971 1.7723 15 7 -0.2976 -5.9944 3.0327 16 6 -0.2249 -7.0521 4.0438 17 6 1.1116 -7.0713 4.7882 18 9 2.0932 -7.6407 3.9699 19 9 0.9830 -7.8280 5.9579 20 9 1.4808 -5.7627 5.1177 21 6 -1.4487 -7.1034 4.9734 22 6 -2.0892 -8.0541 3.9484 23 6 -0.6603 -8.4323 3.5239 24 6 -0.4240 -3.8939 1.2247 25 6 0.3706 -2.5793 1.2488 26 1 -0.4851 0.8400 0.0004 27 1 0.6244 -2.5568 -0.8906 28 1 2.8556 -3.6192 0.9018 29 1 2.8880 -3.5916 -0.8783 30 1 2.1750 -5.8175 0.0645 31 1 0.9371 -5.0739 -0.9782 32 1 -0.9283 -5.2650 3.1383 33 1 -1.2461 -7.5720 5.9365 34 1 -1.9666 -6.1488 5.0666 35 1 -2.6543 -7.5408 3.1705 36 1 -2.6425 -8.8772 4.4006 37 1 -0.5416 -8.5505 2.4468 38 1 -0.2421 -9.2642 4.0906 39 1 -1.1154 -3.8913 0.3822 40 1 -0.9798 -4.0036 2.1559 41 1 0.9987 -2.5467 2.1391 42 1 -0.3219 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:54:52 Heat of formation + Delta-G solvation = -155.687306 kcal Electronic energy + Delta-G solvation = -29144.505298 eV Core-core repulsion = 24710.407245 eV Total energy + Delta-G solvation = -4434.098053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.94904 -47.53977 -47.29260 -40.61994 -38.80563 -36.69492 -33.77618 -33.11072 -31.00240 -30.02632 -28.00466 -26.22380 -26.10256 -23.58058 -22.87905 -22.35113 -20.71732 -19.69260 -19.02583 -18.34828 -18.14647 -17.91584 -17.66255 -16.29123 -15.93991 -15.33540 -14.90539 -14.63782 -14.45623 -14.35634 -14.25361 -13.86095 -13.75417 -13.55120 -13.48790 -13.20249 -13.07713 -12.87850 -12.73618 -12.66322 -12.48194 -12.19018 -11.65282 -11.35037 -11.24520 -11.15520 -10.94029 -10.86179 -10.68185 -10.41664 -10.18027 -9.79173 -9.58341 -9.26610 -9.17229 -8.97616 -8.39984 -7.98561 -6.05443 -4.11243 2.52044 2.81297 3.28876 3.33368 3.36658 3.38226 3.62307 3.87456 3.96197 4.00616 4.38157 4.39544 4.52061 4.71546 4.81619 5.23713 5.29683 5.30003 5.45967 5.51632 5.60049 5.71849 5.82207 5.86402 5.90196 6.02928 6.14200 6.20110 6.37717 6.42580 6.64230 6.75773 6.95227 7.09555 7.15934 7.34178 7.64180 7.89593 8.00309 8.14669 8.38214 8.78539 8.91872 9.53939 11.00049 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.003572 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.658960 B = 7837.501523 C = 7921.976172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.125 4.125 11 C 0.131 3.869 12 N -0.613 5.613 13 C 0.702 3.298 14 O -0.582 6.582 15 N -0.723 5.723 16 C 0.124 3.876 17 C 0.446 3.554 18 F -0.161 7.161 19 F -0.186 7.186 20 F -0.182 7.182 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.128 4.128 24 C 0.109 3.891 25 C -0.124 4.124 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.407 0.593 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -14.645 9.220 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C 0.008 3.992 12 N -0.349 5.349 13 C 0.404 3.596 14 O -0.460 6.460 15 N -0.383 5.383 16 C 0.033 3.967 17 C 0.389 3.611 18 F -0.142 7.142 19 F -0.168 7.168 20 F -0.163 7.163 21 C -0.170 4.170 22 C -0.169 4.169 23 C -0.166 4.166 24 C -0.013 4.013 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.961 -15.170 9.053 18.644 hybrid contribution 0.484 1.552 0.279 1.649 sum -5.477 -13.618 9.332 17.394 Atomic orbital electron populations 1.69815 1.05849 1.26570 1.50954 1.24946 0.94869 0.99034 0.95035 0.86676 0.79646 0.83143 0.78652 1.20284 1.21314 1.20341 1.21181 0.92956 0.90584 1.50304 0.92739 1.18611 0.92630 0.91766 0.93850 1.22033 0.98923 0.94286 1.01042 1.21605 0.91070 0.99641 0.86870 1.47423 1.37891 1.20707 1.28900 1.15877 0.80519 0.83464 0.79719 1.90935 1.45288 1.33238 1.76500 1.44806 1.43853 1.27672 1.21951 1.22191 0.90494 0.92897 0.91141 1.20902 0.88845 0.73730 0.77582 1.93289 1.64652 1.84564 1.71678 1.93120 1.96083 1.76764 1.50812 1.93187 1.92986 1.37184 1.92945 1.23333 0.93237 1.02144 0.98280 1.22796 0.96289 0.99393 0.98452 1.23239 0.95601 0.93621 1.04136 1.22024 0.91552 0.88125 0.99640 1.22106 0.99992 0.94337 0.99782 0.92942 0.95424 0.92945 0.92028 0.90207 0.92315 0.75380 0.87195 0.89385 0.89347 0.90087 0.88707 0.88581 0.91723 0.92676 0.94150 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 11.31 55.43 0.63 -23.46 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.17 2.06 -91.74 -0.19 0.98 16 10 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 11 C 0.13 2.37 6.42 -3.71 -0.02 2.35 16 12 N -0.61 -10.80 2.97 -178.23 -0.53 -11.33 16 13 C 0.70 12.11 7.85 -86.92 -0.68 11.43 16 14 O -0.58 -11.44 12.50 5.28 0.07 -11.38 16 15 N -0.72 -9.81 4.80 -51.66 -0.25 -10.05 16 16 C 0.12 1.49 0.74 -131.01 -0.10 1.39 16 17 C 0.45 6.39 2.68 37.16 0.10 6.49 16 18 F -0.16 -2.76 14.80 2.25 0.03 -2.73 16 19 F -0.19 -2.31 15.82 2.25 0.04 -2.28 16 20 F -0.18 -2.90 17.05 2.25 0.04 -2.86 16 21 C -0.13 -1.07 7.24 -25.92 -0.19 -1.26 16 22 C -0.13 -1.01 7.99 -25.92 -0.21 -1.21 16 23 C -0.13 -1.35 6.68 -25.92 -0.17 -1.52 16 24 C 0.11 1.85 6.46 -3.48 -0.02 1.83 16 25 C -0.12 -2.65 5.17 -26.38 -0.14 -2.79 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.46 7.04 -51.93 -0.37 1.10 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 4.76 6.12 -40.82 -0.25 4.51 16 33 H 0.11 0.79 7.01 -51.93 -0.36 0.43 16 34 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.21 7.22 -51.92 -0.37 0.84 16 38 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.77 5.57 -51.93 -0.29 0.48 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -29.64 338.87 -7.76 -37.40 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.72 Total: 3.14 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.15 Total: 2.71 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.15 Total: -44.85 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.11 Total: -7.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.64 -7.76 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.285 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds