Wall clock time and date at job start Fri Apr 10 2020 15:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86791 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47463 * 240.00386 * 3 2 1 5 5 H 1.48502 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47420 * 120.00011 * 3 2 1 7 7 C 1.37886 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.46030 * 180.02562 * 9 7 2 11 11 C 1.53202 * 109.31092 * 181.36996 * 10 9 7 12 12 N 1.46919 * 108.77387 * 305.36507 * 11 10 9 13 13 C 1.34780 * 120.63001 * 233.58141 * 12 11 10 14 14 O 1.21594 * 119.99887 * 354.94307 * 13 12 11 15 15 N 1.34773 * 120.00324 * 174.93754 * 13 12 11 16 16 C 1.46501 * 120.00479 * 185.39403 * 15 13 12 17 17 C 1.52997 * 112.84740 * 65.55839 * 16 15 13 18 18 F 1.39903 * 109.47428 * 283.60969 * 17 16 15 19 19 F 1.39901 * 109.46940 * 163.60895 * 17 16 15 20 20 F 1.39899 * 109.47167 * 43.61279 * 17 16 15 21 21 C 1.53776 * 113.69165 * 196.83197 * 16 15 13 22 22 C 1.53778 * 87.08274 * 89.12637 * 21 16 15 23 23 C 1.53782 * 113.61274 * 294.36918 * 16 15 13 24 24 C 1.46928 * 118.74111 * 53.86395 * 12 11 10 25 25 C 1.53041 * 109.44740 * 300.06264 * 9 7 2 26 26 H 0.97003 * 120.00338 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46277 * 60.02501 * 9 7 2 28 28 H 1.08998 * 109.49890 * 61.42255 * 10 9 7 29 29 H 1.09000 * 109.50032 * 301.31977 * 10 9 7 30 30 H 1.09003 * 109.58289 * 185.57411 * 11 10 9 31 31 H 1.08993 * 109.70124 * 65.22326 * 11 10 9 32 32 H 0.97000 * 119.99587 * 5.39493 * 15 13 12 33 33 H 1.09001 * 113.61401 * 203.67397 * 21 16 15 34 34 H 1.08999 * 113.61585 * 334.57697 * 21 16 15 35 35 H 1.09001 * 113.61126 * 270.88558 * 22 21 16 36 36 H 1.09000 * 113.68992 * 139.98765 * 22 21 16 37 37 H 1.09007 * 113.61525 * 25.34338 * 23 16 15 38 38 H 1.09000 * 113.61369 * 156.24769 * 23 16 15 39 39 H 1.08995 * 109.58880 * 65.92286 * 24 12 11 40 40 H 1.09000 * 109.58280 * 186.35030 * 24 12 11 41 41 H 1.09003 * 109.49781 * 298.57099 * 25 9 7 42 42 H 1.08999 * 109.49993 * 58.66866 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4765 -4.9867 -0.0351 12 7 0.5224 -5.0087 1.0819 13 6 0.5115 -6.0349 1.9556 14 8 1.2319 -6.9971 1.7723 15 7 -0.2976 -5.9944 3.0327 16 6 -0.2249 -7.0521 4.0438 17 6 1.1116 -7.0713 4.7882 18 9 2.0932 -7.6407 3.9699 19 9 0.9830 -7.8280 5.9579 20 9 1.4808 -5.7627 5.1177 21 6 -1.4487 -7.1034 4.9734 22 6 -2.0892 -8.0541 3.9484 23 6 -0.6603 -8.4323 3.5239 24 6 -0.4240 -3.8939 1.2247 25 6 0.3706 -2.5793 1.2488 26 1 -0.4851 0.8400 0.0004 27 1 0.6244 -2.5568 -0.8906 28 1 2.8556 -3.6192 0.9018 29 1 2.8880 -3.5916 -0.8783 30 1 2.1750 -5.8175 0.0645 31 1 0.9371 -5.0739 -0.9782 32 1 -0.9283 -5.2650 3.1383 33 1 -1.2461 -7.5720 5.9365 34 1 -1.9666 -6.1488 5.0666 35 1 -2.6543 -7.5408 3.1705 36 1 -2.6425 -8.8772 4.4006 37 1 -0.5416 -8.5505 2.4468 38 1 -0.2421 -9.2642 4.0906 39 1 -1.1154 -3.8913 0.3822 40 1 -0.9798 -4.0036 2.1559 41 1 0.9987 -2.5467 2.1391 42 1 -0.3219 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:54:51 Heat of formation + Delta-G solvation = -172.301484 kcal Electronic energy + Delta-G solvation = -29145.225743 eV Core-core repulsion = 24710.407245 eV Total energy + Delta-G solvation = -4434.818497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.08151 -48.64625 -48.50977 -41.79223 -39.92463 -38.19987 -35.40290 -34.51405 -32.69110 -31.59876 -29.05669 -27.88178 -26.93205 -25.03275 -24.17598 -23.80136 -22.07660 -20.74388 -20.50603 -19.45441 -19.31706 -19.09774 -18.94042 -18.25986 -17.02164 -16.57983 -16.43060 -16.13437 -15.55014 -15.48613 -15.38695 -15.17938 -15.00998 -14.90266 -14.73899 -14.71061 -14.49219 -14.29432 -14.11160 -13.97801 -13.37832 -13.25644 -13.17857 -13.08051 -12.80412 -12.48779 -12.15392 -12.06833 -12.01867 -11.85762 -11.64570 -11.46719 -11.15222 -11.00609 -10.78130 -10.41819 -10.37304 -9.46720 -8.07662 -6.20241 1.36475 1.42531 1.43409 1.50443 1.70317 2.10137 2.44432 2.67367 2.75912 2.84270 3.10378 3.18950 3.50630 3.64074 3.74909 4.03296 4.17685 4.22109 4.35033 4.46437 4.57740 4.61801 4.66958 4.70376 4.87187 4.87470 4.96499 4.97973 5.06726 5.10211 5.19957 5.21620 5.42893 5.43982 5.47027 5.65097 5.92319 6.00466 6.13575 6.40490 6.84724 6.88398 7.45629 7.47133 8.95434 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.003572 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.658960 B = 7837.501523 C = 7921.976172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.047 3.953 10 C -0.114 4.114 11 C 0.138 3.862 12 N -0.618 5.618 13 C 0.700 3.300 14 O -0.608 6.608 15 N -0.711 5.711 16 C 0.109 3.891 17 C 0.437 3.563 18 F -0.183 7.183 19 F -0.175 7.175 20 F -0.195 7.195 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.131 4.131 24 C 0.121 3.879 25 C -0.114 4.114 26 H 0.262 0.738 27 H 0.007 0.993 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 -15.257 10.320 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.153 4.153 11 C 0.015 3.985 12 N -0.354 5.354 13 C 0.402 3.598 14 O -0.487 6.487 15 N -0.371 5.371 16 C 0.018 3.982 17 C 0.381 3.619 18 F -0.164 7.164 19 F -0.156 7.156 20 F -0.177 7.177 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.169 4.169 24 C -0.002 4.002 25 C -0.153 4.153 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.258 0.742 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.610 -15.784 10.176 20.263 hybrid contribution 1.052 1.721 -0.039 2.017 sum -6.559 -14.063 10.137 18.535 Atomic orbital electron populations 1.69915 1.06658 1.27189 1.51111 1.25574 0.95698 1.01716 0.94812 0.85809 0.78607 0.79884 0.78495 1.20030 1.20646 1.20317 1.21523 0.92836 0.92416 1.50770 0.93758 1.18584 0.93018 0.91721 0.93832 1.21876 0.98356 0.94659 1.00371 1.21458 0.91270 0.97885 0.87921 1.47405 1.37940 1.21056 1.29031 1.16015 0.80684 0.82908 0.80198 1.90921 1.46464 1.34174 1.77158 1.44679 1.42963 1.28378 1.21035 1.22679 0.90481 0.93268 0.91780 1.21403 0.89377 0.73131 0.77998 1.93241 1.65876 1.84880 1.72446 1.93134 1.96003 1.76368 1.50121 1.93156 1.93237 1.38177 1.93088 1.23426 0.90636 1.03374 0.98149 1.22768 0.94499 0.99869 0.98148 1.23298 0.97994 0.93032 1.02622 1.21893 0.90859 0.85505 1.01917 1.21860 0.99297 0.96228 0.97915 0.92872 0.97459 0.94545 0.91727 0.90324 0.90965 0.74213 0.85829 0.87584 0.89051 0.87578 0.91215 0.87834 0.90935 0.89156 0.95802 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.33 11.31 21.45 0.24 -49.09 16 2 C 0.02 1.13 5.30 84.66 0.45 1.58 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -28.95 8.56 25.60 0.22 -28.73 16 8 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 9 C 0.05 2.23 2.06 -11.52 -0.02 2.21 16 10 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 11 C 0.14 4.95 6.42 86.37 0.55 5.51 16 12 N -0.62 -21.22 2.97 -836.05 -2.48 -23.70 16 13 C 0.70 23.46 7.85 179.05 1.41 24.87 16 14 O -0.61 -23.76 12.50 -4.01 -0.05 -23.81 16 15 N -0.71 -17.95 4.80 -435.60 -2.09 -20.04 16 16 C 0.11 2.39 0.74 4.13 0.00 2.40 16 17 C 0.44 12.08 2.68 71.98 0.19 12.27 16 18 F -0.18 -6.32 14.80 44.97 0.67 -5.65 16 19 F -0.17 -4.05 15.82 44.97 0.71 -3.34 16 20 F -0.20 -6.09 17.05 44.97 0.77 -5.33 16 21 C -0.12 -1.49 7.24 31.12 0.23 -1.26 16 22 C -0.12 -1.34 7.99 31.12 0.25 -1.09 16 23 C -0.13 -2.52 6.68 31.12 0.21 -2.32 16 24 C 0.12 3.93 6.46 86.51 0.56 4.49 16 25 C -0.11 -4.93 5.17 30.82 0.16 -4.77 16 26 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.08 2.87 7.04 -2.39 -0.02 2.86 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.42 8.58 6.12 -92.71 -0.57 8.01 16 33 H 0.12 1.28 7.01 -2.39 -0.02 1.26 16 34 H 0.11 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.72 7.22 -2.38 -0.02 1.70 16 38 H 0.10 1.80 8.06 -2.39 -0.02 1.78 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.09 2.29 5.57 -2.39 -0.01 2.28 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 Total: -1.00 -65.20 338.87 4.64 -60.56 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.49 Total: 15.11 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.36 Total: 10.58 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.33 Total: -92.83 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.14 Total: -14.32 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -65.20 4.64 -60.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.741 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds