Wall clock time and date at job start Fri Apr 10 2020 15:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47189 * 240.00472 * 3 2 1 5 5 H 1.48509 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47070 * 120.00139 * 3 2 1 7 7 C 1.37881 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00317 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47265 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00231 * 189.99714 * 10 9 7 12 12 C 1.53001 * 109.46810 * 76.13282 * 11 10 9 13 13 O 1.42896 * 109.47343 * 64.22054 * 12 11 10 14 14 C 1.35897 * 117.00553 * 184.58775 * 13 12 11 15 15 C 1.38734 * 120.05849 * 175.13849 * 14 13 12 16 16 C 1.38151 * 119.94200 * 180.02562 * 15 14 13 17 17 C 1.38268 * 120.05568 * 0.02562 * 16 15 14 18 18 N 1.48003 * 119.94099 * 179.97438 * 17 16 15 19 19 O 1.21799 * 119.99946 * 0.02562 * 18 17 16 20 20 O 1.21796 * 119.99505 * 179.72712 * 18 17 16 21 21 C 1.38261 * 120.11067 * 0.25396 * 17 16 15 22 22 C 1.38142 * 120.05946 * 359.44880 * 21 17 16 23 23 C 1.46899 * 110.99841 * 66.04483 * 10 9 7 24 24 C 1.53001 * 109.47130 * 199.38693 * 23 10 9 25 25 C 1.53001 * 117.49821 * 242.83501 * 24 23 10 26 26 C 1.53000 * 60.00103 * 252.51294 * 25 24 23 27 27 H 0.96999 * 119.99595 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47128 * 59.99698 * 9 7 2 29 29 H 1.08995 * 109.47006 * 300.00126 * 9 7 2 30 30 H 1.09000 * 109.47200 * 316.13748 * 11 10 9 31 31 H 1.08998 * 109.47398 * 196.13452 * 11 10 9 32 32 H 1.08994 * 109.47343 * 304.22028 * 12 11 10 33 33 H 1.09006 * 109.46825 * 184.21707 * 12 11 10 34 34 H 1.07994 * 120.02887 * 359.97438 * 15 14 13 35 35 H 1.07995 * 119.97076 * 179.97438 * 16 15 14 36 36 H 1.08006 * 119.97516 * 179.72489 * 21 17 16 37 37 H 1.07997 * 120.03375 * 180.25305 * 22 21 17 38 38 H 1.09001 * 109.47376 * 319.39035 * 23 10 9 39 39 H 1.08998 * 109.47322 * 79.38715 * 23 10 9 40 40 H 1.08993 * 115.55032 * 28.54734 * 24 23 10 41 41 H 1.09005 * 117.49929 * 0.02562 * 25 24 23 42 42 H 1.09002 * 117.49873 * 145.01754 * 25 24 23 43 43 H 1.09001 * 117.50059 * 252.51095 * 26 25 24 44 44 H 1.08999 * 117.49670 * 107.49496 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5209 -4.8934 -0.2399 12 6 1.1644 -5.0123 -1.7230 13 8 2.3635 -5.0576 -2.4990 14 6 2.2238 -5.0666 -3.8507 15 6 3.3451 -5.0080 -4.6656 16 6 3.2002 -5.0167 -6.0395 17 6 1.9391 -5.0832 -6.6025 18 7 1.7868 -5.0918 -8.0746 19 8 2.7720 -5.0408 -8.7891 20 8 0.6767 -5.1553 -8.5716 21 6 0.8198 -5.1358 -5.7925 22 6 0.9595 -5.1335 -4.4182 23 6 2.9718 -3.6546 1.2509 24 6 4.2449 -4.4777 1.0447 25 6 4.4012 -5.7562 1.8706 26 6 5.2496 -4.5257 2.1976 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 0.6098 -4.9342 0.3571 31 1 2.1778 -5.7159 0.0430 32 1 0.5694 -4.1502 -2.0240 33 1 0.5909 -5.9247 -1.8869 34 1 4.3302 -4.9549 -4.2264 35 1 4.0727 -4.9708 -6.6743 36 1 -0.1645 -5.1832 -6.2346 37 1 0.0851 -5.1788 -3.7859 38 1 3.2390 -2.6397 1.5451 39 1 2.3662 -4.1121 2.0333 40 1 4.6427 -4.4820 0.0299 41 1 3.5967 -6.0110 2.5606 42 1 4.9017 -6.6019 1.3992 43 1 6.3085 -4.5618 1.9413 44 1 5.0036 -3.9709 3.1030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:19 Heat of formation + Delta-G solvation = 13.058977 kcal Electronic energy + Delta-G solvation = -26427.406271 eV Core-core repulsion = 22542.482347 eV Total energy + Delta-G solvation = -3884.923924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13350 -40.39045 -38.24323 -37.47959 -36.52869 -35.58729 -32.70865 -31.73041 -31.26691 -29.66101 -27.54539 -26.15468 -25.17897 -23.71570 -22.64017 -22.21816 -21.96151 -20.59264 -19.78572 -19.37350 -18.62312 -18.31624 -17.49405 -16.76392 -16.13665 -15.98064 -15.31809 -15.14165 -14.96421 -14.25583 -14.20266 -14.01903 -13.85614 -13.71958 -13.11502 -12.93002 -12.85688 -12.05994 -11.89565 -11.74252 -11.66184 -11.52077 -11.34444 -11.17906 -11.13923 -11.13253 -10.97341 -10.89476 -10.77059 -10.53265 -10.17909 -9.73708 -9.61445 -9.57826 -9.29298 -8.77310 -8.54032 -7.43457 -6.14251 -4.15553 -0.09791 0.80363 1.38603 1.46122 2.97948 3.21200 3.26628 3.31452 3.34207 4.05334 4.23759 4.32136 4.33785 4.55014 4.56071 4.79483 5.02268 5.04712 5.07717 5.19083 5.22211 5.24245 5.34407 5.38173 5.47651 5.58127 5.64481 5.72618 5.77618 5.82292 5.84986 5.99785 6.04002 6.06599 6.21050 6.26221 6.39907 6.41958 6.72801 7.05942 7.13927 7.18281 7.68013 7.68195 7.91848 8.04720 8.39025 8.92098 9.49509 10.96535 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003477 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.126001 B = 8051.110816 C = 9788.561459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.528 5.528 11 C 0.054 3.946 12 C 0.061 3.939 13 O -0.275 6.275 14 C 0.202 3.798 15 C -0.155 4.155 16 C -0.015 4.015 17 C -0.099 4.099 18 N 0.041 4.959 19 O -0.174 6.174 20 O -0.175 6.175 21 C -0.009 4.009 22 C -0.214 4.214 23 C 0.092 3.908 24 C -0.131 4.131 25 C -0.192 4.192 26 C -0.184 4.184 27 H 0.262 0.738 28 H 0.028 0.972 29 H -0.009 1.009 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.021 0.979 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -13.599 -3.536 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.253 5.253 11 C -0.075 4.075 12 C -0.014 4.014 13 O -0.185 6.185 14 C 0.153 3.847 15 C -0.174 4.174 16 C -0.034 4.034 17 C -0.183 4.183 18 N 0.556 4.444 19 O -0.388 6.388 20 O -0.389 6.389 21 C -0.029 4.029 22 C -0.234 4.234 23 C -0.036 4.036 24 C -0.149 4.149 25 C -0.229 4.229 26 C -0.222 4.222 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.661 -13.379 -3.078 14.498 hybrid contribution -0.537 0.865 0.274 1.054 sum 4.125 -12.514 -2.804 13.471 Atomic orbital electron populations 1.69932 1.06073 1.27040 1.50766 1.24970 0.94846 0.99327 0.95274 0.86579 0.79503 0.82733 0.78759 1.20131 1.21322 1.20182 1.21092 0.93547 0.89765 1.50359 0.91753 1.19787 0.90090 0.87602 0.95883 1.62031 1.27420 1.01911 1.33916 1.22080 0.98530 0.95165 0.91753 1.23210 0.85044 1.01174 0.91982 1.86273 1.34957 1.84698 1.12533 1.19520 0.93413 0.87136 0.84655 1.20460 0.99129 1.06949 0.90846 1.20784 0.95816 0.91943 0.94882 1.20896 0.96906 1.21392 0.79094 1.43530 1.00267 0.96941 1.03669 1.94511 1.30133 1.54137 1.60005 1.94516 1.12646 1.54106 1.77594 1.20776 0.98335 0.91136 0.92626 1.21348 0.97767 1.09574 0.94663 1.21575 0.91538 1.00368 0.90080 1.22455 0.97968 0.98079 0.96438 1.23018 1.03222 0.92228 1.04446 1.22896 0.96795 1.01876 1.00588 0.92791 0.95361 0.99097 0.93038 0.90537 0.90470 0.91921 0.82739 0.82644 0.82992 0.83126 0.88978 0.96040 0.87172 0.89470 0.89546 0.89298 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.42 8.24 -34.44 -0.28 -13.70 16 8 H 0.06 1.70 7.31 -52.49 -0.38 1.31 16 9 C 0.19 4.51 4.55 -4.98 -0.02 4.48 16 10 N -0.53 -9.99 4.29 -236.08 -1.01 -11.00 16 11 C 0.05 0.80 5.20 -3.83 -0.02 0.78 16 12 C 0.06 0.81 4.93 37.16 0.18 0.99 16 13 O -0.27 -3.87 10.07 -19.42 -0.20 -4.07 16 14 C 0.20 2.54 6.68 -39.21 -0.26 2.28 16 15 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 16 C -0.02 -0.17 9.55 -39.60 -0.38 -0.55 16 17 C -0.10 -1.24 6.85 -79.94 -0.55 -1.79 16 18 N 0.04 0.58 4.45 33.97 0.15 0.73 16 19 O -0.17 -2.58 18.44 -29.46 -0.54 -3.12 16 20 O -0.18 -2.63 18.44 -29.46 -0.54 -3.17 16 21 C -0.01 -0.11 9.55 -39.61 -0.38 -0.49 16 22 C -0.21 -2.42 9.03 -39.43 -0.36 -2.78 16 23 C 0.09 1.62 5.07 -3.82 -0.02 1.60 16 24 C -0.13 -1.90 5.14 -90.62 -0.47 -2.37 16 25 C -0.19 -2.31 10.12 -26.73 -0.27 -2.58 16 26 C -0.18 -2.31 10.25 -26.73 -0.27 -2.59 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.03 0.71 6.60 -51.93 -0.34 0.36 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 30 H 0.05 0.75 7.99 -51.93 -0.42 0.34 16 31 H 0.08 1.04 7.23 -51.93 -0.38 0.66 16 32 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 33 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 34 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.16 1.44 7.60 -52.49 -0.40 1.04 16 36 H 0.15 1.49 7.61 -52.48 -0.40 1.09 16 37 H 0.15 1.45 6.32 -52.49 -0.33 1.12 16 38 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 39 H 0.02 0.36 7.73 -51.93 -0.40 -0.04 16 40 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -29.51 374.41 -10.57 -40.09 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.20 Total: 1.07 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.59 Total: -17.38 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.13 Total: -35.01 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.28 Total: -10.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.51 -10.57 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.144 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds