Wall clock time and date at job start Fri Apr 10 2020 15:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47220 * 240.00138 * 3 2 1 5 5 H 1.48498 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47008 * 120.00374 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00022 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47041 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99553 * 179.97438 * 10 9 7 12 12 N 1.29638 * 125.41569 * 359.97305 * 11 10 9 13 13 N 1.37767 * 115.60729 * 179.76525 * 12 11 10 14 14 C 1.29576 * 115.62403 * 0.49805 * 13 12 11 15 15 N 1.39000 * 125.40879 * 179.80228 * 14 13 12 16 16 C 1.46499 * 119.99729 * 359.69437 * 15 14 13 17 17 C 1.52998 * 109.47387 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47174 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99739 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00070 * 0.07188 * 20 19 18 22 22 C 1.38234 * 119.99892 * 359.90902 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97485 * 18 17 16 24 24 S 1.76043 * 125.40885 * 180.02562 * 11 10 9 25 25 H 0.96992 * 119.99550 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47265 * 59.99539 * 9 7 2 27 27 H 1.09004 * 109.46681 * 299.99868 * 9 7 2 28 28 H 0.96999 * 120.00330 * 179.69614 * 15 14 13 29 29 H 1.09001 * 109.47369 * 59.99957 * 16 15 14 30 30 H 1.09001 * 109.47043 * 300.00489 * 16 15 14 31 31 H 1.08993 * 109.47576 * 59.99408 * 17 16 15 32 32 H 1.09001 * 109.46567 * 299.99362 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99633 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99751 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4298 -3.8780 -0.0014 11 6 1.3823 -5.2949 -0.0021 12 7 0.0862 -5.2709 -0.0021 13 7 -0.5321 -6.5020 -0.0078 14 6 0.2604 -7.5271 -0.0022 15 7 -0.1433 -8.8572 -0.0023 16 6 -1.5701 -9.1896 -0.0024 17 6 -1.7396 -10.7102 -0.0019 18 6 -3.2073 -11.0520 -0.0014 19 6 -3.8808 -11.2091 -1.1983 20 6 -5.2270 -11.5233 -1.1978 21 6 -5.9000 -11.6788 -0.0004 22 6 -5.2264 -11.5220 1.1965 23 6 -3.8799 -11.2089 1.1960 24 16 1.9297 -6.9680 -0.0015 25 1 -0.4849 0.8400 0.0004 26 1 0.6246 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 0.5196 -9.5653 -0.0023 29 1 -2.0405 -8.7715 -0.8924 30 1 -2.0406 -8.7716 0.8875 31 1 -1.2693 -11.1279 0.8882 32 1 -1.2691 -11.1284 -0.8917 33 1 -3.3563 -11.0822 -2.1339 34 1 -5.7533 -11.6456 -2.1330 35 1 -6.9518 -11.9238 -0.0001 36 1 -5.7521 -11.6439 2.1319 37 1 -3.3538 -11.0861 2.1311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021739825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:54 Heat of formation + Delta-G solvation = 75.950808 kcal Electronic energy + Delta-G solvation = -19870.030898 eV Core-core repulsion = 16672.080905 eV Total energy + Delta-G solvation = -3197.949993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.066 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72270 -39.00860 -36.63423 -33.46228 -33.21359 -31.22379 -30.53895 -28.66087 -28.38749 -24.77723 -23.80197 -23.12355 -22.92196 -21.43131 -20.44720 -19.21739 -17.21969 -16.87395 -16.54981 -16.03654 -15.96640 -15.50901 -15.07071 -14.96518 -14.45105 -14.17639 -13.70136 -13.39862 -13.28073 -13.14927 -12.81349 -12.56470 -12.41838 -12.15635 -12.07507 -11.42289 -11.36169 -10.99551 -10.94216 -10.81120 -10.63264 -10.38703 -9.76978 -9.63572 -9.27057 -9.24671 -9.24201 -9.07219 -8.68026 -8.42868 -6.95229 -6.22337 -4.31081 0.72490 1.00321 1.07047 1.19303 1.41588 2.02641 2.71037 3.05116 3.26314 3.30193 3.31275 3.44456 3.46500 4.31301 4.40859 4.43138 4.63972 4.70069 4.79425 4.79607 4.95993 5.13922 5.15006 5.18538 5.23042 5.52889 5.54810 5.65653 5.71087 5.72329 6.12381 6.18988 6.25610 6.64419 6.65868 7.05241 7.05369 7.15662 7.65184 7.89060 8.41654 8.69582 9.32656 10.87999 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.002099 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.089241 B =13336.821915 C =14330.822694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.076 3.924 10 S -0.036 6.036 11 C 0.045 3.955 12 N -0.264 5.264 13 N -0.353 5.353 14 C 0.304 3.696 15 N -0.696 5.696 16 C 0.141 3.859 17 C -0.091 4.091 18 C -0.081 4.081 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.113 4.113 24 S 0.029 5.971 25 H 0.269 0.731 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.413 0.587 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -26.209 0.003 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.087 0.913 9 C -0.073 4.073 10 S 0.193 5.807 11 C -0.354 4.354 12 N -0.092 5.092 13 N -0.189 5.189 14 C -0.080 4.080 15 N -0.340 5.340 16 C 0.015 3.985 17 C -0.129 4.129 18 C -0.082 4.082 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.131 4.131 24 S 0.261 5.739 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.250 0.750 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.632 -25.807 0.000 26.219 hybrid contribution -0.782 0.441 0.001 0.898 sum -5.414 -25.366 0.001 25.937 Atomic orbital electron populations 1.69971 1.06140 1.27711 1.48039 1.24954 0.94994 0.99221 0.94311 0.86365 0.79371 0.81640 0.78993 1.19792 1.20946 1.19796 1.20536 0.93349 0.88380 1.54432 0.91311 1.21469 0.94109 0.89264 1.02437 1.85591 1.12697 0.93696 1.88689 1.30811 0.98257 1.01202 1.05148 1.75570 1.03821 1.12476 1.17351 1.75086 1.26141 0.92371 1.25255 1.25841 0.92108 0.91179 0.98835 1.43708 1.07707 1.00217 1.82330 1.21375 0.80047 0.93903 1.03155 1.20770 0.93150 0.95165 1.03815 1.19613 0.94994 1.00099 0.93460 1.21097 0.94718 0.99654 0.97607 1.21170 0.94563 0.99732 0.98212 1.21190 0.99949 1.00227 0.92653 1.21168 0.94565 0.99726 0.98217 1.21093 0.94718 0.99663 0.97600 1.85312 1.07475 1.00820 1.80275 0.92166 0.92889 0.92888 0.75033 0.91172 0.91184 0.90091 0.90088 0.85923 0.85985 0.86108 0.85985 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.48 9.13 -34.44 -0.31 -14.80 16 8 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 9 C 0.08 1.99 5.30 36.01 0.19 2.18 16 10 S -0.04 -0.77 22.08 -107.50 -2.37 -3.14 16 11 C 0.05 0.92 7.82 51.84 0.41 1.33 16 12 N -0.26 -5.93 11.62 31.11 0.36 -5.57 16 13 N -0.35 -6.97 11.68 30.86 0.36 -6.61 16 14 C 0.30 4.71 8.42 -87.39 -0.74 3.97 16 15 N -0.70 -7.40 5.73 -60.83 -0.35 -7.75 16 16 C 0.14 1.37 5.96 -4.04 -0.02 1.35 16 17 C -0.09 -0.60 5.46 -27.88 -0.15 -0.76 16 18 C -0.08 -0.64 5.13 -104.63 -0.54 -1.18 16 19 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 20 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 21 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 23 C -0.11 -0.89 9.70 -39.59 -0.38 -1.27 16 24 S 0.03 0.44 23.39 -107.50 -2.51 -2.08 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.05 1.49 8.14 -51.92 -0.42 1.07 16 28 H 0.41 3.06 8.60 -40.82 -0.35 2.71 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -32.09 354.52 -11.22 -43.31 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.54 Total: -1.93 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.23 Total: -12.46 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 1.11 Total: -44.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -4.89 Total: -5.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.09 -11.22 -43.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021739825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.263 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds