Wall clock time and date at job start Fri Apr 10 2020 15:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47220 * 240.00138 * 3 2 1 5 5 H 1.48498 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47008 * 120.00374 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00022 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47041 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99553 * 179.97438 * 10 9 7 12 12 N 1.29638 * 125.41569 * 359.97305 * 11 10 9 13 13 N 1.37767 * 115.60729 * 179.76525 * 12 11 10 14 14 C 1.29576 * 115.62403 * 0.49805 * 13 12 11 15 15 N 1.39000 * 125.40879 * 179.80228 * 14 13 12 16 16 C 1.46499 * 119.99729 * 359.69437 * 15 14 13 17 17 C 1.52998 * 109.47387 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47174 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99739 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00070 * 0.07188 * 20 19 18 22 22 C 1.38234 * 119.99892 * 359.90902 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97485 * 18 17 16 24 24 S 1.76043 * 125.40885 * 180.02562 * 11 10 9 25 25 H 0.96992 * 119.99550 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47265 * 59.99539 * 9 7 2 27 27 H 1.09004 * 109.46681 * 299.99868 * 9 7 2 28 28 H 0.96999 * 120.00330 * 179.69614 * 15 14 13 29 29 H 1.09001 * 109.47369 * 59.99957 * 16 15 14 30 30 H 1.09001 * 109.47043 * 300.00489 * 16 15 14 31 31 H 1.08993 * 109.47576 * 59.99408 * 17 16 15 32 32 H 1.09001 * 109.46567 * 299.99362 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99633 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99751 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4298 -3.8780 -0.0014 11 6 1.3823 -5.2949 -0.0021 12 7 0.0862 -5.2709 -0.0021 13 7 -0.5321 -6.5020 -0.0078 14 6 0.2604 -7.5271 -0.0022 15 7 -0.1433 -8.8572 -0.0023 16 6 -1.5701 -9.1896 -0.0024 17 6 -1.7396 -10.7102 -0.0019 18 6 -3.2073 -11.0520 -0.0014 19 6 -3.8808 -11.2091 -1.1983 20 6 -5.2270 -11.5233 -1.1978 21 6 -5.9000 -11.6788 -0.0004 22 6 -5.2264 -11.5220 1.1965 23 6 -3.8799 -11.2089 1.1960 24 16 1.9297 -6.9680 -0.0015 25 1 -0.4849 0.8400 0.0004 26 1 0.6246 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 0.5196 -9.5653 -0.0023 29 1 -2.0405 -8.7715 -0.8924 30 1 -2.0406 -8.7716 0.8875 31 1 -1.2693 -11.1279 0.8882 32 1 -1.2691 -11.1284 -0.8917 33 1 -3.3563 -11.0822 -2.1339 34 1 -5.7533 -11.6456 -2.1330 35 1 -6.9518 -11.9238 -0.0001 36 1 -5.7521 -11.6439 2.1319 37 1 -3.3538 -11.0861 2.1311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021739825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:53 Heat of formation + Delta-G solvation = 57.314517 kcal Electronic energy + Delta-G solvation = -19870.839028 eV Core-core repulsion = 16672.080905 eV Total energy + Delta-G solvation = -3198.758124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55440 -40.15172 -37.65312 -35.33087 -34.25638 -31.78826 -31.76865 -30.72318 -29.29247 -26.00968 -25.25427 -24.75525 -23.47521 -22.07812 -21.75295 -20.50105 -18.72297 -18.22595 -17.68502 -17.39447 -16.79265 -16.64973 -16.18425 -16.14375 -15.69815 -15.16136 -14.99500 -14.49507 -14.37500 -14.33818 -14.23912 -13.95515 -13.79411 -13.07784 -12.84655 -12.76623 -12.68941 -12.47670 -12.16275 -11.98799 -11.93010 -11.75663 -11.64145 -11.22940 -11.07524 -10.77169 -10.58226 -9.82174 -9.64993 -9.64273 -8.61171 -8.33070 -6.51147 -0.63681 -0.23165 -0.00807 0.39214 0.49161 0.50410 1.26322 1.42688 1.47419 1.48660 1.58127 1.99010 2.37535 2.86335 3.01489 3.53869 3.88893 3.90210 3.97323 4.15614 4.17463 4.19112 4.30359 4.53399 4.61675 4.63659 4.85958 4.91648 4.94609 4.97834 5.15427 5.17807 5.51478 5.52665 5.57962 5.63691 5.68463 5.77646 6.11297 6.19564 6.57664 7.03764 7.18535 8.78893 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.002099 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.089241 B =13336.821915 C =14330.822694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.077 3.923 10 S -0.004 6.004 11 C 0.006 3.994 12 N -0.303 5.303 13 N -0.395 5.395 14 C 0.308 3.692 15 N -0.668 5.668 16 C 0.142 3.858 17 C -0.077 4.077 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.126 4.126 24 S 0.122 5.878 25 H 0.271 0.729 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.433 0.567 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -28.201 0.005 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.096 0.904 9 C -0.072 4.072 10 S 0.224 5.776 11 C -0.394 4.394 12 N -0.132 5.132 13 N -0.233 5.233 14 C -0.075 4.075 15 N -0.313 5.313 16 C 0.016 3.984 17 C -0.115 4.115 18 C -0.094 4.094 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.144 4.144 24 S 0.355 5.645 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.274 0.726 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.034 -27.886 0.002 28.050 hybrid contribution -1.367 0.744 0.001 1.556 sum -4.401 -27.142 0.003 27.496 Atomic orbital electron populations 1.70119 1.08117 1.28858 1.49064 1.26040 0.95843 1.03434 0.93408 0.85210 0.78043 0.76388 0.79694 1.18553 1.20545 1.18559 1.20940 0.93900 0.89253 1.54313 0.90364 1.21016 0.94785 0.92218 0.99196 1.85028 1.10412 0.92342 1.89797 1.30799 0.98397 1.03763 1.06479 1.75532 1.05234 1.15019 1.17447 1.75050 1.26892 0.92433 1.28951 1.26199 0.92643 0.92223 0.96476 1.43902 1.08934 0.98715 1.79717 1.21429 0.78946 0.96227 1.01786 1.20695 0.92793 0.92374 1.05635 1.19782 0.95652 1.00417 0.93534 1.21348 0.95121 0.99735 0.98171 1.21456 0.94794 0.99636 0.99027 1.21485 1.00914 0.99960 0.92656 1.21454 0.94797 0.99629 0.99032 1.21345 0.95121 0.99743 0.98165 1.84852 1.05160 0.95501 1.78944 0.91974 0.96254 0.96253 0.72632 0.92618 0.92627 0.88264 0.88261 0.84927 0.84587 0.84532 0.84586 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.94 13.29 21.45 0.28 -55.65 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.54 -30.73 9.13 25.60 0.23 -30.49 16 8 H 0.08 4.16 7.71 -2.91 -0.02 4.13 16 9 C 0.08 4.28 5.30 71.24 0.38 4.66 16 10 S 0.00 -0.20 22.08 -56.49 -1.25 -1.44 16 11 C 0.01 0.23 7.82 130.57 1.02 1.25 16 12 N -0.30 -14.08 11.62 -55.47 -0.64 -14.72 16 13 N -0.39 -15.73 11.68 -56.29 -0.66 -16.39 16 14 C 0.31 9.06 8.42 179.22 1.51 10.57 16 15 N -0.67 -12.47 5.73 -346.37 -1.98 -14.45 16 16 C 0.14 2.53 5.96 86.38 0.52 3.05 16 17 C -0.08 -0.82 5.46 29.85 0.16 -0.66 16 18 C -0.09 -1.33 5.13 -19.87 -0.10 -1.43 16 19 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 20 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 21 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 24 S 0.12 3.47 23.39 -56.49 -1.32 2.15 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.43 4.67 8.60 -92.71 -0.80 3.88 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.10 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -73.13 354.52 2.04 -71.10 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 0.30 Total: 4.16 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 5.28 Total: -19.87 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.00 Total: -101.21 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.57 Total: 0.70 kcal Total: -73.13 2.04 -71.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021739825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.413 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds