Wall clock time and date at job start Fri Apr 10 2020 15:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48495 * 109.47470 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.46929 * 30.00055 * 3 2 1 6 6 H 1.48507 * 109.46961 * 149.99869 * 3 2 1 7 7 C 1.37882 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99925 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00035 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00034 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99732 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.47095 * 179.97438 * 13 11 10 15 15 N 1.28734 * 125.33900 * 89.97245 * 14 13 11 16 16 N 1.28991 * 108.94102 * 180.02562 * 15 14 13 17 17 C 1.34045 * 107.27112 * 359.97438 * 16 15 14 18 18 C 1.48449 * 126.67762 * 179.97438 * 17 16 15 19 19 C 1.39312 * 120.10638 * 179.75434 * 18 17 16 20 20 C 1.37999 * 119.89550 * 179.74461 * 19 18 17 21 21 C 1.38443 * 120.10382 * 0.53137 * 20 19 18 22 22 Cl 1.73600 * 119.89507 * 179.69823 * 21 20 19 23 23 C 1.38440 * 120.20685 * 359.72506 * 21 20 19 24 24 C 1.37997 * 120.10304 * 0.02562 * 23 21 20 25 25 N 1.28864 * 125.34095 * 269.99338 * 14 13 11 26 26 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47129 * 60.00212 * 9 7 2 28 28 H 1.09007 * 109.47387 * 300.00159 * 9 7 2 29 29 H 0.96999 * 119.99787 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47541 * 59.99649 * 13 11 10 31 31 H 1.09000 * 109.46929 * 299.99602 * 13 11 10 32 32 H 1.07995 * 120.05100 * 359.97438 * 19 18 17 33 33 H 1.07994 * 119.95267 * 180.24878 * 20 19 18 34 34 H 1.08000 * 119.94544 * 180.02562 * 23 21 20 35 35 H 1.08005 * 120.05041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8215 0.0001 12 8 6.1129 -1.8997 -0.0004 13 6 5.8272 -4.2424 -0.0003 14 7 7.2922 -4.2424 -0.0008 15 7 8.0371 -4.2422 1.0491 16 7 9.2744 -4.2417 0.6846 17 6 9.2944 -4.2423 -0.6557 18 6 10.4981 -4.2416 -1.5245 19 6 10.3594 -4.2475 -2.9107 20 6 11.4813 -4.2415 -3.7143 21 6 12.7432 -4.2407 -3.1449 22 17 14.1509 -4.2410 -4.1609 23 6 12.8861 -4.2402 -1.7679 24 6 11.7700 -4.2410 -0.9563 25 7 8.0373 -4.2423 -1.0522 26 1 -0.4850 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.3694 -3.3125 0.0001 30 1 5.4639 -4.7559 -0.8905 31 1 5.4637 -4.7565 0.8895 32 1 9.3754 -4.2530 -3.3557 33 1 11.3748 -4.2420 -4.7889 34 1 13.8726 -4.2392 -1.3282 35 1 11.8825 -4.2402 0.1179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031652491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:25 Heat of formation + Delta-G solvation = 112.489079 kcal Electronic energy + Delta-G solvation = -22622.594161 eV Core-core repulsion = 18877.891665 eV Total energy + Delta-G solvation = -3744.702496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.37933 -39.65903 -39.35867 -36.89758 -35.20955 -34.59104 -33.60272 -32.58900 -31.57079 -31.20605 -29.46145 -27.62389 -24.68023 -24.08846 -22.83635 -21.97420 -21.83503 -20.46215 -18.36878 -18.13609 -17.40488 -16.86321 -16.35906 -15.95831 -15.64439 -15.41733 -15.14147 -14.51278 -14.23023 -13.96960 -13.92650 -13.86138 -13.29377 -13.24479 -12.58127 -12.50705 -12.19432 -12.16659 -12.05951 -11.83980 -11.27205 -11.22065 -11.19426 -11.02367 -10.89565 -10.78343 -10.10446 -9.71800 -9.63369 -9.47595 -8.94100 -8.82587 -8.49363 -6.33858 -4.37982 0.32463 0.89408 1.14741 1.64564 1.71485 2.17927 2.65768 3.18020 3.25065 3.32662 3.34409 3.41845 3.52933 3.99419 4.22107 4.41558 4.47633 4.61358 4.67043 4.82411 4.86491 5.01292 5.09365 5.14702 5.25896 5.56112 5.58160 5.77839 5.80706 5.97393 6.05659 6.29245 6.56701 6.83762 6.86297 7.17110 7.81699 8.22068 8.23856 8.40467 8.64410 9.24509 10.77632 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.438427 B =12749.151463 C =13421.299303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.222 3.778 10 N -0.691 5.691 11 C 0.490 3.510 12 O -0.537 6.537 13 C 0.105 3.895 14 N -0.114 5.114 15 N -0.043 5.043 16 N -0.274 5.274 17 C 0.200 3.800 18 C 0.001 3.999 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.023 4.023 22 Cl -0.068 7.068 23 C -0.112 4.112 24 C -0.067 4.067 25 N -0.284 5.284 26 H 0.269 0.731 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.402 0.598 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.072 -13.246 -5.537 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.100 0.900 9 C 0.100 3.900 10 N -0.340 5.340 11 C 0.271 3.729 12 O -0.415 6.415 13 C -0.019 4.019 14 N -0.025 5.025 15 N -0.036 5.036 16 N -0.145 5.145 17 C -0.080 4.080 18 C -0.003 4.003 19 C -0.090 4.090 20 C -0.130 4.130 21 C -0.050 4.050 22 Cl -0.039 7.039 23 C -0.131 4.131 24 C -0.087 4.087 25 N -0.135 5.135 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.236 0.764 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.097 -12.435 -5.023 25.849 hybrid contribution 0.152 0.637 -0.518 0.835 sum 22.249 -11.798 -5.541 25.786 Atomic orbital electron populations 1.69860 1.06190 1.27643 1.48730 1.24774 0.94807 0.99175 0.93684 0.86837 0.80554 0.83275 0.79155 1.19749 1.20698 1.18569 1.21014 0.88109 0.95397 1.54152 0.89999 1.19611 0.95576 0.77587 0.97232 1.46083 1.04522 1.11953 1.71432 1.20104 0.84337 0.89344 0.79105 1.90783 1.55337 1.45204 1.50172 1.22224 0.70718 0.99754 1.09177 1.49357 1.09535 1.42858 1.00731 1.78936 0.96107 1.14547 1.14026 1.75977 1.09963 1.18295 1.10285 1.23405 0.91031 1.03717 0.89843 1.17331 0.88349 1.03360 0.91213 1.21193 0.99539 0.96596 0.91634 1.20993 0.90016 1.01079 1.00947 1.21122 0.88360 1.03848 0.91691 1.98384 1.40336 1.96771 1.68434 1.20990 0.99807 1.01163 0.91103 1.21172 0.89990 0.96456 1.01119 1.74835 1.02531 1.21066 1.15023 0.92061 0.95269 0.95775 0.76404 0.83652 0.83437 0.83836 0.84142 0.84119 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.55 -14.12 9.83 -34.44 -0.34 -14.46 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 C 0.22 5.05 4.50 -5.20 -0.02 5.02 16 10 N -0.69 -12.04 5.55 -61.48 -0.34 -12.38 16 11 C 0.49 8.17 7.90 -10.99 -0.09 8.09 16 12 O -0.54 -11.71 16.43 5.56 0.09 -11.62 16 13 C 0.11 1.17 7.08 -5.19 -0.04 1.13 16 14 N -0.11 -1.64 3.48 -11.67 -0.04 -1.69 16 15 N -0.04 -0.68 13.23 60.35 0.80 0.12 16 16 N -0.27 -4.22 12.23 32.15 0.39 -3.83 16 17 C 0.20 2.83 7.94 -156.30 -1.24 1.59 16 18 C 0.00 0.01 5.88 -104.89 -0.62 -0.61 16 19 C -0.07 -0.67 9.70 -39.27 -0.38 -1.06 16 20 C -0.11 -0.93 9.81 -39.59 -0.39 -1.31 16 21 C -0.02 -0.19 6.32 -39.43 -0.25 -0.44 16 22 Cl -0.07 -0.53 28.95 -51.86 -1.50 -2.03 16 23 C -0.11 -0.90 9.81 -39.60 -0.39 -1.29 16 24 C -0.07 -0.64 9.70 -39.27 -0.38 -1.02 16 25 N -0.28 -4.17 11.85 32.17 0.38 -3.79 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.02 0.58 7.57 -51.92 -0.39 0.19 16 29 H 0.40 5.65 8.32 -40.82 -0.34 5.31 16 30 H 0.15 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.15 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.14 1.32 7.88 -52.49 -0.41 0.91 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.15 1.28 7.89 -52.48 -0.41 0.87 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -33.95 335.24 -6.49 -40.45 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.20 Total: 0.53 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.23 Total: -2.27 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 1.97 Total: -46.13 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.95 -6.49 -40.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031652491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.936 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds