Wall clock time and date at job start Fri Apr 10 2020 15:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48495 * 109.47470 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.46929 * 30.00055 * 3 2 1 6 6 H 1.48507 * 109.46961 * 149.99869 * 3 2 1 7 7 C 1.37882 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99925 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00035 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00034 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99732 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.47095 * 179.97438 * 13 11 10 15 15 N 1.28734 * 125.33900 * 89.97245 * 14 13 11 16 16 N 1.28991 * 108.94102 * 180.02562 * 15 14 13 17 17 C 1.34045 * 107.27112 * 359.97438 * 16 15 14 18 18 C 1.48449 * 126.67762 * 179.97438 * 17 16 15 19 19 C 1.39312 * 120.10638 * 179.75434 * 18 17 16 20 20 C 1.37999 * 119.89550 * 179.74461 * 19 18 17 21 21 C 1.38443 * 120.10382 * 0.53137 * 20 19 18 22 22 Cl 1.73600 * 119.89507 * 179.69823 * 21 20 19 23 23 C 1.38440 * 120.20685 * 359.72506 * 21 20 19 24 24 C 1.37997 * 120.10304 * 0.02562 * 23 21 20 25 25 N 1.28864 * 125.34095 * 269.99338 * 14 13 11 26 26 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47129 * 60.00212 * 9 7 2 28 28 H 1.09007 * 109.47387 * 300.00159 * 9 7 2 29 29 H 0.96999 * 119.99787 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47541 * 59.99649 * 13 11 10 31 31 H 1.09000 * 109.46929 * 299.99602 * 13 11 10 32 32 H 1.07995 * 120.05100 * 359.97438 * 19 18 17 33 33 H 1.07994 * 119.95267 * 180.24878 * 20 19 18 34 34 H 1.08000 * 119.94544 * 180.02562 * 23 21 20 35 35 H 1.08005 * 120.05041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8215 0.0001 12 8 6.1129 -1.8997 -0.0004 13 6 5.8272 -4.2424 -0.0003 14 7 7.2922 -4.2424 -0.0008 15 7 8.0371 -4.2422 1.0491 16 7 9.2744 -4.2417 0.6846 17 6 9.2944 -4.2423 -0.6557 18 6 10.4981 -4.2416 -1.5245 19 6 10.3594 -4.2475 -2.9107 20 6 11.4813 -4.2415 -3.7143 21 6 12.7432 -4.2407 -3.1449 22 17 14.1509 -4.2410 -4.1609 23 6 12.8861 -4.2402 -1.7679 24 6 11.7700 -4.2410 -0.9563 25 7 8.0373 -4.2423 -1.0522 26 1 -0.4850 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.3694 -3.3125 0.0001 30 1 5.4639 -4.7559 -0.8905 31 1 5.4637 -4.7565 0.8895 32 1 9.3754 -4.2530 -3.3557 33 1 11.3748 -4.2420 -4.7889 34 1 13.8726 -4.2392 -1.3282 35 1 11.8825 -4.2402 0.1179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031652491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:25 Heat of formation + Delta-G solvation = 88.448920 kcal Electronic energy + Delta-G solvation = -22623.636621 eV Core-core repulsion = 18877.891665 eV Total energy + Delta-G solvation = -3745.744955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.44835 -40.85392 -40.28996 -37.55536 -36.49728 -36.05635 -34.62055 -34.51330 -32.32263 -32.07256 -30.76007 -29.14542 -25.60656 -25.25066 -24.09783 -23.20225 -22.70548 -21.87417 -19.75445 -19.11986 -18.55004 -18.24175 -17.36368 -17.20371 -16.85391 -16.62212 -16.33897 -15.90899 -15.30791 -14.98896 -14.90517 -14.62212 -14.59943 -14.56380 -14.38451 -13.79033 -13.22703 -13.14433 -12.97601 -12.90218 -12.75342 -12.62126 -12.35350 -12.18843 -11.98948 -11.81356 -11.75574 -11.67883 -11.08315 -10.95086 -10.14583 -10.13603 -9.61082 -8.42238 -6.49047 -0.48549 0.05176 0.22394 0.68539 1.05584 1.21613 1.29325 1.33945 1.36453 1.44238 2.16413 2.25111 2.55461 2.61748 2.93418 3.05020 3.52615 3.71087 3.84459 3.86383 3.93184 4.16394 4.23056 4.36834 4.54190 4.57205 4.70079 4.87357 4.92391 4.95854 5.11713 5.12298 5.20676 5.31593 5.33012 5.60774 6.01983 6.49613 6.60999 7.05530 7.12942 7.21990 8.71926 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.438427 B =12749.151463 C =13421.299303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.030 3.970 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.232 3.768 10 N -0.685 5.685 11 C 0.493 3.507 12 O -0.591 6.591 13 C 0.111 3.889 14 N -0.116 5.116 15 N -0.061 5.061 16 N -0.291 5.291 17 C 0.199 3.801 18 C -0.025 4.025 19 C -0.072 4.072 20 C -0.109 4.109 21 C -0.024 4.024 22 Cl -0.060 7.060 23 C -0.107 4.107 24 C -0.069 4.069 25 N -0.296 5.296 26 H 0.272 0.728 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.420 0.580 30 H 0.190 0.810 31 H 0.192 0.808 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.595 -14.186 -6.302 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.171 4.171 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.108 3.892 10 N -0.336 5.336 11 C 0.277 3.723 12 O -0.472 6.472 13 C -0.011 4.011 14 N -0.027 5.027 15 N -0.054 5.054 16 N -0.162 5.162 17 C -0.080 4.080 18 C -0.029 4.029 19 C -0.092 4.092 20 C -0.127 4.127 21 C -0.052 4.052 22 Cl -0.031 7.031 23 C -0.126 4.126 24 C -0.089 4.089 25 N -0.146 5.146 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.257 0.743 30 H 0.207 0.793 31 H 0.209 0.791 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.613 -13.422 -5.787 27.771 hybrid contribution -0.255 0.868 -0.331 0.963 sum 23.358 -12.554 -6.118 27.214 Atomic orbital electron populations 1.69955 1.07529 1.28578 1.50488 1.25518 0.95465 1.02384 0.93778 0.85960 0.79219 0.79966 0.79336 1.19139 1.19976 1.18805 1.21251 0.89591 0.94825 1.52588 0.91303 1.19156 0.93629 0.80469 0.95921 1.45786 1.05660 1.10478 1.71677 1.20901 0.83169 0.91306 0.76927 1.90764 1.56497 1.47688 1.52277 1.22558 0.69266 0.95802 1.13515 1.49627 1.10356 1.42386 1.00380 1.78862 0.96531 1.15229 1.14751 1.75935 1.10087 1.19109 1.11098 1.23923 0.91776 1.02572 0.89750 1.17522 0.88074 1.05594 0.91666 1.21252 1.00204 0.96618 0.91136 1.21195 0.89520 1.00172 1.01849 1.21276 0.88724 1.03143 0.92018 1.98392 1.39826 1.96667 1.68179 1.21209 1.00322 1.00059 0.90972 1.21254 0.89799 0.96332 1.01514 1.74815 1.02847 1.21723 1.15240 0.91830 0.96841 0.96905 0.74283 0.79294 0.79128 0.83682 0.82161 0.81920 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.26 13.96 21.45 0.30 -52.96 16 2 C 0.03 1.60 5.47 84.66 0.46 2.06 16 3 Si 0.93 42.74 27.47 68.60 1.88 44.62 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 7 C -0.54 -27.99 9.83 25.60 0.25 -27.74 16 8 H 0.07 3.64 7.84 -2.91 -0.02 3.62 16 9 C 0.23 10.49 4.50 85.63 0.38 10.88 16 10 N -0.69 -22.98 5.55 -466.80 -2.59 -25.57 16 11 C 0.49 15.72 7.90 87.66 0.69 16.41 16 12 O -0.59 -25.63 16.43 -3.02 -0.05 -25.68 16 13 C 0.11 2.14 7.08 85.63 0.61 2.74 16 14 N -0.12 -3.16 3.48 -190.85 -0.66 -3.82 16 15 N -0.06 -1.87 13.23 37.02 0.49 -1.38 16 16 N -0.29 -8.91 12.23 -52.19 -0.64 -9.55 16 17 C 0.20 5.57 7.94 137.37 1.09 6.66 16 18 C -0.03 -0.56 5.88 -20.04 -0.12 -0.67 16 19 C -0.07 -1.32 9.70 22.47 0.22 -1.10 16 20 C -0.11 -1.61 9.81 22.26 0.22 -1.39 16 21 C -0.02 -0.36 6.32 22.37 0.14 -0.21 16 22 Cl -0.06 -0.80 28.95 -2.72 -0.08 -0.88 16 23 C -0.11 -1.53 9.81 22.26 0.22 -1.31 16 24 C -0.07 -1.24 9.70 22.47 0.22 -1.02 16 25 N -0.30 -8.39 11.85 -52.13 -0.62 -9.00 16 26 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 28 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 29 H 0.42 10.95 8.32 -92.71 -0.77 10.18 16 30 H 0.19 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.19 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.15 2.55 7.88 -2.91 -0.02 2.53 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.15 2.53 7.89 -2.91 -0.02 2.51 16 Total: -1.00 -74.67 335.24 2.75 -71.92 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.33 Total: 7.01 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.38 Total: 5.29 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.72 Total: -102.28 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -74.67 2.75 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031652491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.370 kcal (2) G-P(sol) polarization free energy of solvation -74.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds