Wall clock time and date at job start Fri Apr 10 2020 15:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48506 * 109.46966 * 270.00084 * 3 2 1 5 5 H 1.48490 * 109.47377 * 30.00030 * 3 2 1 6 6 H 1.48498 * 109.47194 * 150.00383 * 3 2 1 7 7 C 1.39062 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99877 * 180.02562 * 7 2 1 9 9 N 1.36852 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99753 * 180.02562 * 9 7 2 11 11 O 1.21622 * 119.99900 * 359.97438 * 10 9 7 12 12 C 1.47564 * 119.99956 * 179.97438 * 10 9 7 13 13 C 1.39793 * 120.02871 * 179.97438 * 12 10 9 14 14 C 1.37618 * 119.96527 * 179.74662 * 13 12 10 15 15 C 1.39544 * 120.03481 * 0.27631 * 14 13 12 16 16 C 1.48234 * 119.97416 * 179.97438 * 15 14 13 17 17 C 1.39424 * 120.07783 * 359.73095 * 16 15 14 18 18 C 1.38176 * 119.90816 * 179.69864 * 17 16 15 19 19 F 1.35095 * 119.95652 * 180.29660 * 18 17 16 20 20 C 1.38716 * 120.08337 * 0.59654 * 18 17 16 21 21 F 1.35109 * 119.91472 * 179.69849 * 20 18 17 22 22 C 1.38714 * 120.17142 * 359.67670 * 20 18 17 23 23 F 1.35099 * 119.95968 * 180.02562 * 22 20 18 24 24 C 1.38169 * 120.08447 * 0.02562 * 22 20 18 25 25 C 1.39554 * 120.05578 * 359.97438 * 15 14 13 26 26 C 1.37606 * 120.03209 * 359.97438 * 25 15 14 27 27 H 0.96994 * 120.00257 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 29 29 H 1.08002 * 120.01962 * 0.02995 * 13 12 10 30 30 H 1.08008 * 119.98562 * 180.25947 * 14 13 12 31 31 H 1.07992 * 120.04613 * 359.97438 * 17 16 15 32 32 H 1.07997 * 120.04422 * 179.97438 * 24 22 20 33 33 H 1.08000 * 119.98075 * 179.97438 * 25 15 14 34 34 H 1.08002 * 120.01555 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4401 0.6999 7 6 2.0088 -1.2043 -0.0005 8 1 3.0888 -1.2043 -0.0001 9 7 1.3245 -2.3895 -0.0005 10 6 1.9985 -3.5567 -0.0005 11 8 3.2147 -3.5566 -0.0010 12 6 1.2607 -4.8346 0.0000 13 6 1.9591 -6.0456 -0.0005 14 6 1.2697 -7.2367 0.0053 15 6 -0.1258 -7.2360 0.0059 16 6 -0.8669 -8.5197 0.0116 17 6 -0.1715 -9.7281 0.0107 18 6 -0.8659 -10.9227 0.0223 19 9 -0.1930 -12.0941 0.0275 20 6 -2.2531 -10.9206 0.0223 21 9 -2.9286 -12.0907 0.0275 22 6 -2.9484 -9.7204 0.0175 23 9 -4.2994 -9.7234 0.0181 24 6 -2.2612 -8.5218 0.0121 25 6 -0.8241 -6.0278 0.0012 26 6 -0.1374 -4.8354 -0.0036 27 1 -0.4850 0.8400 0.0004 28 1 0.3546 -2.3895 -0.0005 29 1 3.0391 -6.0465 -0.0009 30 1 1.8090 -8.1725 0.0091 31 1 0.9084 -9.7305 0.0054 32 1 -2.8032 -7.5877 0.0079 33 1 -1.9041 -6.0287 0.0012 34 1 -0.6781 -3.9005 -0.0068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173373004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:06 Heat of formation + Delta-G solvation = -136.861372 kcal Electronic energy + Delta-G solvation = -24639.224333 eV Core-core repulsion = 20279.699797 eV Total energy + Delta-G solvation = -4359.524536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.85475 -50.26509 -49.54720 -41.16327 -40.14595 -38.58724 -36.14012 -33.87173 -33.21884 -32.39635 -31.32217 -30.10697 -27.25359 -25.30305 -24.89322 -23.06647 -22.91522 -21.20959 -20.23351 -19.53152 -18.88480 -18.71100 -18.35282 -17.85531 -17.17961 -16.90659 -16.55352 -16.43121 -16.31051 -16.03479 -16.02465 -15.55428 -15.49166 -15.42194 -15.29254 -14.70846 -14.42409 -14.08027 -13.84485 -13.65630 -13.49816 -13.02409 -12.84383 -12.79455 -12.73835 -12.47101 -12.13268 -11.83903 -11.61100 -10.65119 -10.53376 -10.13620 -10.08431 -9.97186 -9.21290 -8.58138 -6.01674 -0.91648 -0.32381 0.22441 0.44754 1.39008 1.41771 1.54516 1.83902 2.23496 2.25589 2.28301 2.90263 2.99886 3.03695 3.09411 3.18818 3.29729 3.30088 3.81218 3.89945 4.00061 4.12078 4.28845 4.34648 4.38869 4.48295 4.67605 4.68974 4.83186 4.93114 5.08492 5.29576 5.35842 5.45150 5.47994 5.52137 5.86551 5.94200 6.48226 7.00825 7.41557 7.98874 8.58792 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.002385 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.702589 B =11737.771310 C =12716.604762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.549 5.549 10 C 0.456 3.544 11 O -0.640 6.640 12 C -0.112 4.112 13 C -0.085 4.085 14 C -0.093 4.093 15 C -0.048 4.048 16 C 0.019 3.981 17 C -0.117 4.117 18 C 0.100 3.900 19 F -0.124 7.124 20 C 0.014 3.986 21 F -0.130 7.130 22 C 0.100 3.900 23 F -0.124 7.124 24 C -0.118 4.118 25 C -0.093 4.093 26 C -0.104 4.104 27 H 0.284 0.716 28 H 0.399 0.601 29 H 0.126 0.874 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -19.131 0.014 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.183 5.183 10 C 0.247 3.753 11 O -0.530 6.530 12 C -0.115 4.115 13 C -0.104 4.104 14 C -0.111 4.111 15 C -0.049 4.049 16 C 0.018 3.982 17 C -0.136 4.136 18 C 0.080 3.920 19 F -0.102 7.102 20 C -0.007 4.007 21 F -0.109 7.109 22 C 0.079 3.921 23 F -0.103 7.103 24 C -0.136 4.136 25 C -0.110 4.110 26 C -0.124 4.124 27 H 0.093 0.907 28 H 0.235 0.765 29 H 0.143 0.857 30 H 0.183 0.817 31 H 0.198 0.802 32 H 0.197 0.803 33 H 0.182 0.818 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.484 -19.013 0.018 20.433 hybrid contribution -0.288 0.514 -0.003 0.589 sum -7.771 -18.499 0.015 20.065 Atomic orbital electron populations 1.69616 1.06965 1.30034 1.47995 1.26162 0.96610 1.02646 0.95485 0.84863 0.77958 0.76276 0.78903 1.19351 1.19148 1.19620 1.19797 0.93119 0.83823 1.49940 0.89839 1.41918 1.09684 1.04760 1.61967 1.18604 0.87417 0.84802 0.84525 1.90559 1.15326 1.88010 1.59094 1.20241 0.94621 0.93277 1.03400 1.21189 1.00669 0.90988 0.97567 1.21388 0.93063 0.98230 0.98407 1.18667 0.92942 0.91283 1.01992 1.18257 0.91649 0.91688 0.96609 1.21448 1.03111 0.88353 1.00659 1.17207 0.87039 0.82911 1.04877 1.91565 1.79521 1.45341 1.93821 1.17892 0.89482 0.81621 1.11732 1.91527 1.79866 1.45171 1.94307 1.17215 0.77561 0.92419 1.04881 1.91566 1.27730 1.97168 1.93822 1.21451 0.93822 0.97702 1.00670 1.21381 1.01462 0.90038 0.98157 1.21377 0.92290 0.99761 0.98930 0.90660 0.76499 0.85650 0.81706 0.80194 0.80291 0.81803 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.75 13.05 21.68 0.28 -46.47 16 2 C -0.01 -0.37 5.50 84.96 0.47 0.09 16 3 Si 1.00 41.14 29.55 68.60 2.03 43.17 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.34 -18.84 9.68 84.11 0.81 -18.02 16 8 H 0.08 4.97 7.15 -2.91 -0.02 4.95 16 9 N -0.55 -28.16 5.23 -309.86 -1.62 -29.78 16 10 C 0.46 22.47 7.71 86.70 0.67 23.14 16 11 O -0.64 -36.28 15.91 -4.10 -0.07 -36.35 16 12 C -0.11 -4.12 5.88 -20.06 -0.12 -4.24 16 13 C -0.08 -2.58 9.58 22.50 0.22 -2.36 16 14 C -0.09 -1.93 9.41 22.44 0.21 -1.72 16 15 C -0.05 -0.90 5.88 -19.99 -0.12 -1.02 16 16 C 0.02 0.27 5.88 -20.05 -0.12 0.15 16 17 C -0.12 -1.55 9.40 22.54 0.21 -1.33 16 18 C 0.10 1.63 7.30 22.37 0.16 1.80 16 19 F -0.12 -2.25 17.17 44.97 0.77 -1.48 16 20 C 0.01 0.25 7.31 22.50 0.16 0.42 16 21 F -0.13 -2.80 17.09 44.97 0.77 -2.03 16 22 C 0.10 1.65 7.30 22.37 0.16 1.82 16 23 F -0.12 -2.32 17.17 44.97 0.77 -1.54 16 24 C -0.12 -1.59 9.40 22.54 0.21 -1.38 16 25 C -0.09 -1.92 9.41 22.44 0.21 -1.71 16 26 C -0.10 -3.06 9.52 22.50 0.21 -2.85 16 27 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.40 19.04 5.91 -92.71 -0.55 18.49 16 29 H 0.13 4.06 7.64 -2.91 -0.02 4.04 16 30 H 0.17 2.11 6.18 -2.91 -0.02 2.09 16 31 H 0.18 1.54 6.18 -2.91 -0.02 1.52 16 32 H 0.18 1.64 6.18 -2.91 -0.02 1.62 16 33 H 0.16 2.16 6.18 -2.91 -0.02 2.15 16 34 H 0.13 3.83 6.39 -2.91 -0.02 3.82 16 Total: -1.00 -67.47 315.76 6.97 -60.50 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.67 Total: 21.20 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.36 Total: -7.21 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.34 Total: -76.25 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.07 Total: -36.35 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 2.31 Total: -5.06 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -67.47 6.97 -60.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.366 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds