Wall clock time and date at job start Fri Apr 10 2020 15:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47305 * 274.99807 * 3 2 1 5 5 H 1.48501 * 109.47228 * 35.00079 * 3 2 1 6 6 H 1.48508 * 109.47110 * 155.00052 * 3 2 1 7 7 C 1.40145 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00048 * 174.95933 * 7 2 1 9 9 C 1.41705 * 120.00147 * 354.94992 * 7 2 1 10 10 O 1.21784 * 119.99901 * 5.04712 * 9 7 2 11 11 N 1.34779 * 120.00059 * 185.04885 * 9 7 2 12 12 C 1.39137 * 120.00092 * 184.53700 * 11 9 7 13 13 C 1.38976 * 120.15657 * 325.19714 * 12 11 9 14 14 C 1.38009 * 120.03276 * 180.02562 * 13 12 11 15 15 C 1.38558 * 120.35991 * 0.04165 * 14 13 12 16 16 C 1.37983 * 120.31977 * 359.69443 * 15 14 13 17 17 C 1.39315 * 119.95608 * 0.53862 * 16 15 14 18 18 C 1.48192 * 120.17642 * 179.76183 * 17 16 15 19 19 C 1.39463 * 120.08465 * 129.45054 * 18 17 16 20 20 C 1.38154 * 119.91545 * 180.25672 * 19 18 17 21 21 F 1.35102 * 119.95990 * 179.97438 * 20 19 18 22 22 C 1.38749 * 120.08388 * 0.03822 * 20 19 18 23 23 F 1.35099 * 119.91072 * 179.97438 * 22 20 19 24 24 C 1.38736 * 120.17369 * 359.95966 * 22 20 19 25 25 F 1.35095 * 119.95819 * 179.97438 * 24 22 20 26 26 C 1.38160 * 120.08611 * 0.02562 * 24 22 20 27 27 H 0.97005 * 119.99946 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00108 * 4.53555 * 11 9 7 29 29 H 1.07998 * 119.98595 * 0.02562 * 13 12 11 30 30 H 1.08005 * 119.82425 * 180.02562 * 14 13 12 31 31 H 1.07999 * 119.84432 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.02169 * 180.28095 * 16 15 14 33 33 H 1.08006 * 120.04361 * 0.29418 * 19 18 17 34 34 H 1.07995 * 120.04420 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3822 2.1074 -1.3947 5 1 1.4946 2.6198 0.8031 6 1 3.5867 1.4118 0.5917 7 6 2.0069 -1.2137 -0.0005 8 1 3.0838 -1.2156 -0.0827 9 6 1.3024 -2.4386 0.1069 10 8 0.0846 -2.4426 0.1072 11 7 1.9802 -3.5991 0.2089 12 6 1.2918 -4.8082 0.2193 13 6 0.0446 -4.8963 0.8261 14 6 -0.6357 -6.0970 0.8354 15 6 -0.0820 -7.2203 0.2426 16 6 1.1529 -7.1481 -0.3687 17 6 1.8535 -5.9440 -0.3816 18 6 3.1825 -5.8623 -1.0321 19 6 3.4472 -4.8527 -1.9571 20 6 4.6856 -4.7830 -2.5654 21 9 4.9429 -3.8057 -3.4620 22 6 5.6652 -5.7162 -2.2577 23 9 6.8748 -5.6451 -2.8550 24 6 5.4057 -6.7220 -1.3380 25 9 6.3625 -7.6287 -1.0420 26 6 4.1698 -6.7982 -0.7252 27 1 -0.4850 0.8401 -0.0004 28 1 2.9479 -3.5914 0.2751 29 1 -0.3925 -4.0247 1.2905 30 1 -1.6050 -6.1615 1.3075 31 1 -0.6219 -8.1556 0.2544 32 1 1.5780 -8.0256 -0.8332 33 1 2.6852 -4.1259 -2.1972 34 1 3.9685 -7.5817 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187642629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:09 Heat of formation + Delta-G solvation = -119.540327 kcal Electronic energy + Delta-G solvation = -26084.574979 eV Core-core repulsion = 21725.801540 eV Total energy + Delta-G solvation = -4358.773439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.75774 -49.17560 -48.43524 -39.99387 -38.29098 -37.05079 -33.73365 -32.68094 -31.99255 -30.58985 -29.45905 -28.52110 -26.49673 -23.71510 -23.44854 -22.26962 -21.14457 -19.92274 -18.33369 -17.89567 -17.73374 -17.43251 -16.75643 -16.48147 -15.92098 -15.72338 -15.47099 -15.38216 -14.92601 -14.91643 -14.53577 -14.36388 -14.04267 -13.91202 -13.41187 -12.96276 -12.91027 -12.65082 -12.32222 -12.11888 -11.77706 -11.70621 -11.48830 -11.21980 -11.04832 -10.88646 -10.71204 -10.41268 -9.46820 -9.16411 -9.02172 -8.95029 -8.28638 -7.80256 -7.21099 -6.48460 -5.01311 0.48755 0.72287 1.73029 1.91866 2.99792 3.08591 3.09169 3.12011 3.30106 3.90410 4.03852 4.10738 4.21374 4.36008 4.37442 4.44058 4.52783 4.92949 5.25584 5.36778 5.39768 5.47704 5.58844 5.65195 5.73330 5.82714 5.98923 6.13806 6.19085 6.42622 6.53791 6.74504 6.93065 7.00175 7.14130 7.28500 7.70952 7.91079 8.03659 8.70667 9.11812 10.25941 10.45169 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.005176 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.383414 B = 5407.815529 C = 7663.282746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.090 3.910 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.542 3.458 10 O -0.564 6.564 11 N -0.700 5.700 12 C 0.220 3.780 13 C -0.131 4.131 14 C -0.089 4.089 15 C -0.168 4.168 16 C -0.078 4.078 17 C -0.134 4.134 18 C 0.029 3.971 19 C -0.120 4.120 20 C 0.106 3.894 21 F -0.117 7.117 22 C 0.020 3.980 23 F -0.122 7.122 24 C 0.097 3.903 25 F -0.123 7.123 26 C -0.132 4.132 27 H 0.274 0.726 28 H 0.392 0.608 29 H 0.149 0.851 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.161 0.839 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -12.089 -1.044 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.352 3.648 10 O -0.447 6.447 11 N -0.342 5.342 12 C 0.120 3.880 13 C -0.152 4.152 14 C -0.108 4.108 15 C -0.187 4.187 16 C -0.097 4.097 17 C -0.138 4.138 18 C 0.029 3.971 19 C -0.139 4.139 20 C 0.085 3.915 21 F -0.096 7.096 22 C -0.001 4.001 23 F -0.101 7.101 24 C 0.077 3.923 25 F -0.102 7.102 26 C -0.151 4.151 27 H 0.085 0.915 28 H 0.226 0.774 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.178 0.822 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.334 -11.820 -1.111 13.015 hybrid contribution 1.452 0.861 -0.305 1.715 sum 6.786 -10.959 -1.416 12.967 Atomic orbital electron populations 1.69996 1.07297 1.28060 1.31807 1.25740 0.94637 1.00707 0.92312 0.86289 0.80390 0.80815 0.79056 1.19470 1.20093 1.18557 1.20031 0.94740 0.90037 1.52314 0.91123 1.17060 0.87570 0.81894 0.78299 1.90649 1.13462 1.85365 1.55269 1.44278 1.09758 1.04461 1.75709 1.17954 0.92736 0.85442 0.91911 1.21535 0.95022 0.98506 1.00103 1.21148 0.99118 0.92478 0.98034 1.20823 0.96505 0.98537 1.02884 1.20778 0.94754 0.95493 0.98628 1.18305 0.94701 0.95177 1.05580 1.18372 0.93025 0.92334 0.93403 1.21519 0.95504 1.00416 0.96469 1.17254 0.93583 0.87912 0.92743 1.91581 1.94312 1.59217 1.64466 1.17621 0.82902 0.99303 1.00292 1.91531 1.40668 1.95960 1.81902 1.17170 0.87736 0.89228 0.98151 1.91543 1.62257 1.64410 1.91950 1.21238 0.90347 1.01737 1.01732 0.91522 0.77432 0.83389 0.86425 0.86639 0.86384 0.82161 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.53 11.75 55.56 0.65 -19.87 16 2 C 0.09 2.30 5.49 -17.35 -0.10 2.21 16 3 Si 0.91 18.80 29.56 -169.99 -5.03 13.77 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.54 -13.85 9.31 -37.54 -0.35 -14.20 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.54 13.95 7.40 -14.93 -0.11 13.84 16 10 O -0.56 -16.38 12.30 5.11 0.06 -16.31 16 11 N -0.70 -14.41 4.05 -12.26 -0.05 -14.46 16 12 C 0.22 4.16 6.23 -83.52 -0.52 3.63 16 13 C -0.13 -2.53 8.68 -39.39 -0.34 -2.87 16 14 C -0.09 -1.38 10.03 -39.55 -0.40 -1.78 16 15 C -0.17 -2.26 10.03 -39.56 -0.40 -2.66 16 16 C -0.08 -1.04 9.51 -39.27 -0.37 -1.42 16 17 C -0.13 -2.06 5.49 -104.66 -0.57 -2.63 16 18 C 0.03 0.40 4.97 -104.89 -0.52 -0.12 16 19 C -0.12 -1.77 8.30 -39.16 -0.32 -2.10 16 20 C 0.11 1.53 7.30 -39.42 -0.29 1.24 16 21 F -0.12 -1.83 17.17 2.25 0.04 -1.80 16 22 C 0.02 0.28 7.32 -39.21 -0.29 -0.01 16 23 F -0.12 -1.78 17.09 2.25 0.04 -1.74 16 24 C 0.10 1.22 7.30 -39.43 -0.29 0.94 16 25 F -0.12 -1.55 17.17 2.25 0.04 -1.51 16 26 C -0.13 -1.54 9.49 -39.15 -0.37 -1.91 16 27 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 28 H 0.39 7.20 7.61 -40.82 -0.31 6.89 16 29 H 0.15 3.33 6.19 -52.49 -0.33 3.00 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 33 H 0.16 2.66 7.63 -52.48 -0.40 2.26 16 34 H 0.15 1.47 8.05 -52.49 -0.42 1.04 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -29.40 317.04 -6.98 -36.38 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.27 Total: 8.60 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -5.24 Total: -7.83 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.60 Total: -34.34 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.06 Total: -16.31 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.12 Total: -5.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.40 -6.98 -36.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187642629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.160 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds