Wall clock time and date at job start Fri Apr 10 2020 15:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47305 * 274.99807 * 3 2 1 5 5 H 1.48501 * 109.47228 * 35.00079 * 3 2 1 6 6 H 1.48508 * 109.47110 * 155.00052 * 3 2 1 7 7 C 1.40145 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00048 * 174.95933 * 7 2 1 9 9 C 1.41705 * 120.00147 * 354.94992 * 7 2 1 10 10 O 1.21784 * 119.99901 * 5.04712 * 9 7 2 11 11 N 1.34779 * 120.00059 * 185.04885 * 9 7 2 12 12 C 1.39137 * 120.00092 * 184.53700 * 11 9 7 13 13 C 1.38976 * 120.15657 * 325.19714 * 12 11 9 14 14 C 1.38009 * 120.03276 * 180.02562 * 13 12 11 15 15 C 1.38558 * 120.35991 * 0.04165 * 14 13 12 16 16 C 1.37983 * 120.31977 * 359.69443 * 15 14 13 17 17 C 1.39315 * 119.95608 * 0.53862 * 16 15 14 18 18 C 1.48192 * 120.17642 * 179.76183 * 17 16 15 19 19 C 1.39463 * 120.08465 * 129.45054 * 18 17 16 20 20 C 1.38154 * 119.91545 * 180.25672 * 19 18 17 21 21 F 1.35102 * 119.95990 * 179.97438 * 20 19 18 22 22 C 1.38749 * 120.08388 * 0.03822 * 20 19 18 23 23 F 1.35099 * 119.91072 * 179.97438 * 22 20 19 24 24 C 1.38736 * 120.17369 * 359.95966 * 22 20 19 25 25 F 1.35095 * 119.95819 * 179.97438 * 24 22 20 26 26 C 1.38160 * 120.08611 * 0.02562 * 24 22 20 27 27 H 0.97005 * 119.99946 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00108 * 4.53555 * 11 9 7 29 29 H 1.07998 * 119.98595 * 0.02562 * 13 12 11 30 30 H 1.08005 * 119.82425 * 180.02562 * 14 13 12 31 31 H 1.07999 * 119.84432 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.02169 * 180.28095 * 16 15 14 33 33 H 1.08006 * 120.04361 * 0.29418 * 19 18 17 34 34 H 1.07995 * 120.04420 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3822 2.1074 -1.3947 5 1 1.4946 2.6198 0.8031 6 1 3.5867 1.4118 0.5917 7 6 2.0069 -1.2137 -0.0005 8 1 3.0838 -1.2156 -0.0827 9 6 1.3024 -2.4386 0.1069 10 8 0.0846 -2.4426 0.1072 11 7 1.9802 -3.5991 0.2089 12 6 1.2918 -4.8082 0.2193 13 6 0.0446 -4.8963 0.8261 14 6 -0.6357 -6.0970 0.8354 15 6 -0.0820 -7.2203 0.2426 16 6 1.1529 -7.1481 -0.3687 17 6 1.8535 -5.9440 -0.3816 18 6 3.1825 -5.8623 -1.0321 19 6 3.4472 -4.8527 -1.9571 20 6 4.6856 -4.7830 -2.5654 21 9 4.9429 -3.8057 -3.4620 22 6 5.6652 -5.7162 -2.2577 23 9 6.8748 -5.6451 -2.8550 24 6 5.4057 -6.7220 -1.3380 25 9 6.3625 -7.6287 -1.0420 26 6 4.1698 -6.7982 -0.7252 27 1 -0.4850 0.8401 -0.0004 28 1 2.9479 -3.5914 0.2751 29 1 -0.3925 -4.0247 1.2905 30 1 -1.6050 -6.1615 1.3075 31 1 -0.6219 -8.1556 0.2544 32 1 1.5780 -8.0256 -0.8332 33 1 2.6852 -4.1259 -2.1972 34 1 3.9685 -7.5817 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187642629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:09 Heat of formation + Delta-G solvation = -135.312179 kcal Electronic energy + Delta-G solvation = -26085.258898 eV Core-core repulsion = 21725.801540 eV Total energy + Delta-G solvation = -4359.457358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.86895 -50.27844 -49.55720 -41.32787 -39.67394 -38.57157 -35.40924 -34.54817 -33.29041 -31.69131 -30.86194 -29.82183 -28.29179 -24.86297 -24.61787 -23.71814 -22.40081 -21.54457 -19.63687 -19.29658 -18.91498 -18.69329 -17.93286 -17.83345 -17.60943 -17.03069 -16.65323 -16.57116 -16.12845 -16.03556 -16.00388 -15.58818 -15.46497 -15.19996 -14.90301 -14.46519 -14.34183 -14.06313 -13.51672 -13.46838 -13.25165 -12.98384 -12.82889 -12.79586 -12.71818 -12.29355 -12.12744 -12.05323 -11.09057 -10.79681 -10.31004 -10.09373 -9.86921 -9.41375 -8.70228 -8.41431 -7.03452 -0.63258 -0.34712 0.50232 0.64174 1.36402 1.37810 1.53434 1.99217 2.18175 2.21114 2.35363 2.87368 2.95544 3.00329 3.13660 3.25232 3.34644 3.61714 3.86121 4.15080 4.22216 4.33459 4.36076 4.57131 4.63310 4.69750 4.76262 4.85101 5.04380 5.18808 5.20271 5.42651 5.56373 5.57045 5.74076 5.86875 5.99185 6.13623 6.43381 6.72556 7.33658 8.35458 8.54037 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.005176 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.383414 B = 5407.815529 C = 7663.282746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.534 3.466 10 O -0.608 6.608 11 N -0.693 5.693 12 C 0.182 3.818 13 C -0.163 4.163 14 C -0.092 4.092 15 C -0.150 4.150 16 C -0.068 4.068 17 C -0.122 4.122 18 C 0.025 3.975 19 C -0.124 4.124 20 C 0.096 3.904 21 F -0.129 7.129 22 C 0.020 3.980 23 F -0.127 7.127 24 C 0.107 3.893 25 F -0.118 7.118 26 C -0.103 4.103 27 H 0.279 0.721 28 H 0.400 0.600 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.134 0.866 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -14.790 -1.038 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.600 4.600 8 H 0.103 0.897 9 C 0.343 3.657 10 O -0.495 6.495 11 N -0.336 5.336 12 C 0.084 3.916 13 C -0.184 4.184 14 C -0.110 4.110 15 C -0.168 4.168 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.025 3.975 19 C -0.143 4.143 20 C 0.076 3.924 21 F -0.107 7.107 22 C -0.001 4.001 23 F -0.105 7.105 24 C 0.087 3.913 25 F -0.096 7.096 26 C -0.121 4.121 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.901 -14.583 -1.102 16.171 hybrid contribution 0.960 1.481 -0.312 1.793 sum 7.861 -13.102 -1.414 15.344 Atomic orbital electron populations 1.70136 1.09459 1.29464 1.33404 1.26885 0.95414 1.04783 0.91025 0.85082 0.79091 0.75371 0.79362 1.18734 1.19336 1.17323 1.20516 0.95603 0.90908 1.52933 0.89723 1.17270 0.87193 0.83486 0.77701 1.90613 1.15271 1.86595 1.57003 1.43693 1.09859 1.04229 1.75856 1.18171 0.93268 0.85832 0.94360 1.21303 0.96252 0.98736 1.02150 1.21374 0.99668 0.91828 0.98144 1.21301 0.96327 0.98984 1.00226 1.21308 0.94283 0.95755 0.97263 1.18419 0.95256 0.94600 1.04267 1.18258 0.93055 0.92836 0.93393 1.21299 0.95108 1.00500 0.97442 1.17246 0.93819 0.88237 0.93086 1.91547 1.94390 1.59841 1.64968 1.17706 0.82443 0.99453 1.00503 1.91520 1.40910 1.96010 1.82093 1.17102 0.88015 0.88680 0.97497 1.91568 1.62167 1.64094 1.91803 1.21405 0.88841 1.01089 1.00796 0.91039 0.76479 0.88090 0.84700 0.82368 0.81987 0.84777 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.21 11.75 21.85 0.26 -45.95 16 2 C 0.04 2.01 5.49 85.34 0.47 2.48 16 3 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.56 -30.47 9.31 23.59 0.22 -30.25 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.53 29.28 7.40 85.10 0.63 29.92 16 10 O -0.61 -38.03 12.30 -4.62 -0.06 -38.09 16 11 N -0.69 -30.05 4.05 -310.88 -1.26 -31.31 16 12 C 0.18 7.05 6.23 38.65 0.24 7.29 16 13 C -0.16 -6.62 8.68 22.39 0.19 -6.42 16 14 C -0.09 -2.76 10.03 22.29 0.22 -2.54 16 15 C -0.15 -3.40 10.03 22.29 0.22 -3.18 16 16 C -0.07 -1.51 9.51 22.47 0.21 -1.30 16 17 C -0.12 -3.52 5.49 -19.89 -0.11 -3.63 16 18 C 0.03 0.64 4.97 -20.04 -0.10 0.54 16 19 C -0.12 -3.65 8.30 22.55 0.19 -3.46 16 20 C 0.10 2.75 7.30 22.37 0.16 2.92 16 21 F -0.13 -4.09 17.17 44.97 0.77 -3.31 16 22 C 0.02 0.52 7.32 22.51 0.16 0.68 16 23 F -0.13 -3.50 17.09 44.97 0.77 -2.73 16 24 C 0.11 2.34 7.30 22.37 0.16 2.50 16 25 F -0.12 -2.53 17.17 44.97 0.77 -1.75 16 26 C -0.10 -1.99 9.49 22.55 0.21 -1.77 16 27 H 0.28 14.62 8.29 -92.70 -0.77 13.85 16 28 H 0.40 15.33 7.61 -92.71 -0.71 14.62 16 29 H 0.10 5.02 6.19 -2.91 -0.02 5.00 16 30 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.16 2.28 8.04 -2.91 -0.02 2.26 16 33 H 0.13 4.70 7.63 -2.91 -0.02 4.68 16 34 H 0.19 2.42 8.05 -2.91 -0.02 2.39 16 Total: -1.00 -69.69 317.04 6.87 -62.82 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.49 Total: 25.21 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 3.10 Total: -6.22 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.00 Total: -77.26 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.06 Total: -38.09 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.31 Total: -7.80 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -69.69 6.87 -62.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187642629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.497 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds