Wall clock time and date at job start Fri Apr 10 2020 15:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99649 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99607 * 3 2 1 6 6 H 1.48495 * 109.47400 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57942 * 294.48776 * 11 10 9 13 13 O 1.42097 * 108.57959 * 65.51305 * 11 10 9 14 14 C 1.81398 * 101.92304 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.34542 * 126.07822 * 89.99967 * 15 14 11 17 17 O 1.34777 * 107.27360 * 180.02562 * 16 15 14 18 18 C 1.34435 * 107.68891 * 359.97438 * 17 16 15 19 19 C 1.47831 * 125.72196 * 179.97438 * 18 17 16 20 20 C 1.39570 * 120.13978 * 179.75281 * 19 18 17 21 21 C 1.37962 * 119.84988 * 179.72017 * 20 19 18 22 22 C 1.38356 * 120.14422 * 0.55123 * 21 20 19 23 23 C 1.38356 * 120.29042 * 359.72265 * 22 21 20 24 24 C 1.37955 * 120.14818 * 359.97438 * 23 22 21 25 25 N 1.31218 * 108.54687 * 359.73163 * 18 17 16 26 26 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47378 * 60.00090 * 9 7 2 28 28 H 1.09002 * 109.46895 * 299.99670 * 9 7 2 29 29 H 1.09003 * 109.46991 * 59.99248 * 10 9 7 30 30 H 1.09003 * 109.46903 * 300.00513 * 10 9 7 31 31 H 1.08998 * 109.47096 * 300.00087 * 14 11 10 32 32 H 1.09006 * 109.47169 * 59.99793 * 14 11 10 33 33 H 1.07994 * 126.36878 * 0.02613 * 16 15 14 34 34 H 1.07994 * 120.07378 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.92571 * 180.27708 * 21 20 19 36 36 H 1.07999 * 119.85259 * 179.74218 * 22 21 20 37 37 H 1.07997 * 119.92188 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.07850 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6286 -5.3456 1.2274 13 8 0.6278 -5.3463 -1.2242 14 6 2.6877 -6.4450 0.0004 15 6 2.1122 -7.8378 0.0015 16 6 1.8085 -8.5705 -1.0852 17 8 1.3212 -9.7493 -0.6498 18 6 1.3328 -9.7246 0.6942 19 6 0.8809 -10.8173 1.5815 20 6 0.9497 -10.6685 2.9675 21 6 0.5210 -11.6899 3.7899 22 6 0.0344 -12.8641 3.2435 23 6 -0.0311 -13.0202 1.8703 24 6 0.3886 -12.0043 1.0367 25 7 1.8173 -8.5699 1.0864 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.3007 -6.3056 -0.8900 32 1 3.3021 -6.3054 0.8900 33 1 1.9322 -8.2701 -2.1151 34 1 1.3338 -9.7543 3.3952 35 1 0.5694 -11.5742 4.8627 36 1 -0.2961 -13.6622 3.8917 37 1 -0.4123 -13.9392 1.4502 38 1 0.3366 -12.1272 -0.0349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190911550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:17 Heat of formation + Delta-G solvation = -26.425085 kcal Electronic energy + Delta-G solvation = -23260.626145 eV Core-core repulsion = 19583.191178 eV Total energy + Delta-G solvation = -3677.434967 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.56407 -39.35068 -36.47814 -35.62782 -35.41562 -33.88521 -33.10426 -31.37467 -31.19971 -30.68571 -27.77785 -25.59239 -24.18732 -23.18088 -21.87934 -21.43516 -20.95876 -18.50323 -18.08170 -17.21954 -16.80870 -16.69865 -15.98973 -15.79896 -15.66677 -15.51364 -15.12376 -14.53246 -14.42269 -14.17508 -13.80843 -13.53098 -13.38726 -13.25208 -12.67797 -12.49705 -11.88722 -11.83771 -11.74944 -11.56116 -11.50100 -11.47634 -11.07901 -10.94583 -10.82419 -10.77802 -10.38613 -10.36346 -9.88875 -9.64995 -9.34883 -9.15175 -8.49341 -8.48275 -6.11402 -4.17382 0.27203 0.35948 1.01780 1.55378 2.36745 2.48546 3.19644 3.26558 3.32850 3.35462 3.44915 3.48815 3.99839 4.23785 4.36163 4.46179 4.51327 4.58592 4.71621 4.74389 5.01461 5.03436 5.11951 5.23620 5.23908 5.33618 5.50966 5.57458 5.63418 5.66844 5.67469 5.84290 6.06835 6.07700 6.13292 6.46772 6.51058 7.34336 7.39787 7.41476 7.81166 8.17485 8.86187 9.47096 10.99482 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.002383 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.542520 B =11747.885766 C =12137.229964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.570 4.570 11 S 2.398 3.602 12 O -0.931 6.931 13 O -0.941 6.941 14 C -0.544 4.544 15 C -0.005 4.005 16 C -0.044 4.044 17 O -0.191 6.191 18 C 0.232 3.768 19 C -0.017 4.017 20 C -0.069 4.069 21 C -0.121 4.121 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.089 4.089 25 N -0.452 5.452 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.228 0.772 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -25.819 2.018 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.703 4.703 11 S 2.581 3.419 12 O -0.928 6.928 13 O -0.938 6.938 14 C -0.668 4.668 15 C -0.127 4.127 16 C -0.117 4.117 17 O -0.077 6.077 18 C 0.028 3.972 19 C -0.018 4.018 20 C -0.088 4.088 21 C -0.139 4.139 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.109 4.109 25 N -0.181 5.181 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.760 -25.767 2.625 26.172 hybrid contribution 1.365 0.979 -0.865 1.889 sum 5.125 -24.788 1.760 25.373 Atomic orbital electron populations 1.69966 1.06112 1.27189 1.49444 1.25079 0.94989 0.99543 0.94934 0.86458 0.79695 0.82842 0.78211 1.20473 1.21007 1.19753 1.21013 0.93072 0.89710 1.52302 0.91980 1.18998 0.92715 0.90057 0.99270 1.30229 1.13426 1.16473 1.10176 1.08996 0.78417 0.78799 0.75674 1.93563 1.68402 1.85537 1.45269 1.93534 1.68590 1.85938 1.45749 1.29004 1.20246 1.04996 1.12543 1.20482 1.06143 0.97067 0.88978 1.25095 1.01910 0.83339 1.01325 1.84512 1.63928 1.35933 1.23346 1.23808 1.00297 0.94335 0.78774 1.17290 1.03225 0.90259 0.91063 1.21289 0.96669 0.99741 0.91095 1.21154 0.99193 0.93247 1.00285 1.21390 0.97761 0.97603 0.95268 1.21071 1.00479 0.98983 0.93527 1.21251 0.96982 0.92010 1.00630 1.70516 1.14824 1.02162 1.30595 0.92519 0.94601 0.94552 0.85933 0.86004 0.83628 0.83342 0.75543 0.84075 0.84919 0.85432 0.85184 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.57 -10.47 5.74 37.16 0.21 -10.26 16 11 S 2.40 42.36 4.70 -107.50 -0.51 41.85 16 12 O -0.93 -20.15 18.10 -57.83 -1.05 -21.20 16 13 O -0.94 -19.00 18.10 -57.83 -1.05 -20.04 16 14 C -0.54 -6.80 6.35 36.01 0.23 -6.57 16 15 C -0.01 -0.07 6.36 -82.88 -0.53 -0.60 16 16 C -0.04 -0.55 12.08 29.43 0.36 -0.19 16 17 O -0.19 -2.48 10.52 4.04 0.04 -2.44 16 18 C 0.23 3.24 7.90 -13.89 -0.11 3.13 16 19 C -0.02 -0.20 5.87 -104.98 -0.62 -0.81 16 20 C -0.07 -0.72 9.69 -39.19 -0.38 -1.10 16 21 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 22 C -0.10 -0.69 10.04 -39.49 -0.40 -1.08 16 23 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 24 C -0.09 -0.81 9.72 -39.19 -0.38 -1.19 16 25 N -0.45 -7.14 10.91 -7.97 -0.09 -7.23 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 31 H 0.15 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.15 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.23 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.14 1.53 7.83 -52.49 -0.41 1.12 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 1.02 7.90 -52.49 -0.41 0.61 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -38.10 352.69 -9.16 -47.26 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.59 Total: 0.03 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -2.96 Total: -33.84 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.65 Total: -33.07 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -2.05 Total: -43.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 42.36 SS G_CDS: -0.51 Total: 41.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.10 -9.16 -47.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190911550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.836 kcal (2) G-P(sol) polarization free energy of solvation -38.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds