Wall clock time and date at job start Fri Apr 10 2020 15:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99649 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99607 * 3 2 1 6 6 H 1.48495 * 109.47400 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57942 * 294.48776 * 11 10 9 13 13 O 1.42097 * 108.57959 * 65.51305 * 11 10 9 14 14 C 1.81398 * 101.92304 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.34542 * 126.07822 * 89.99967 * 15 14 11 17 17 O 1.34777 * 107.27360 * 180.02562 * 16 15 14 18 18 C 1.34435 * 107.68891 * 359.97438 * 17 16 15 19 19 C 1.47831 * 125.72196 * 179.97438 * 18 17 16 20 20 C 1.39570 * 120.13978 * 179.75281 * 19 18 17 21 21 C 1.37962 * 119.84988 * 179.72017 * 20 19 18 22 22 C 1.38356 * 120.14422 * 0.55123 * 21 20 19 23 23 C 1.38356 * 120.29042 * 359.72265 * 22 21 20 24 24 C 1.37955 * 120.14818 * 359.97438 * 23 22 21 25 25 N 1.31218 * 108.54687 * 359.73163 * 18 17 16 26 26 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47378 * 60.00090 * 9 7 2 28 28 H 1.09002 * 109.46895 * 299.99670 * 9 7 2 29 29 H 1.09003 * 109.46991 * 59.99248 * 10 9 7 30 30 H 1.09003 * 109.46903 * 300.00513 * 10 9 7 31 31 H 1.08998 * 109.47096 * 300.00087 * 14 11 10 32 32 H 1.09006 * 109.47169 * 59.99793 * 14 11 10 33 33 H 1.07994 * 126.36878 * 0.02613 * 16 15 14 34 34 H 1.07994 * 120.07378 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.92571 * 180.27708 * 21 20 19 36 36 H 1.07999 * 119.85259 * 179.74218 * 22 21 20 37 37 H 1.07997 * 119.92188 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.07850 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6286 -5.3456 1.2274 13 8 0.6278 -5.3463 -1.2242 14 6 2.6877 -6.4450 0.0004 15 6 2.1122 -7.8378 0.0015 16 6 1.8085 -8.5705 -1.0852 17 8 1.3212 -9.7493 -0.6498 18 6 1.3328 -9.7246 0.6942 19 6 0.8809 -10.8173 1.5815 20 6 0.9497 -10.6685 2.9675 21 6 0.5210 -11.6899 3.7899 22 6 0.0344 -12.8641 3.2435 23 6 -0.0311 -13.0202 1.8703 24 6 0.3886 -12.0043 1.0367 25 7 1.8173 -8.5699 1.0864 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.3007 -6.3056 -0.8900 32 1 3.3021 -6.3054 0.8900 33 1 1.9322 -8.2701 -2.1151 34 1 1.3338 -9.7543 3.3952 35 1 0.5694 -11.5742 4.8627 36 1 -0.2961 -13.6622 3.8917 37 1 -0.4123 -13.9392 1.4502 38 1 0.3366 -12.1272 -0.0349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190911550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:16 Heat of formation + Delta-G solvation = -56.023623 kcal Electronic energy + Delta-G solvation = -23261.909634 eV Core-core repulsion = 19583.191178 eV Total energy + Delta-G solvation = -3678.718456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.54848 -39.99003 -37.99948 -37.06023 -36.52692 -35.86440 -33.94964 -33.12694 -32.02182 -31.55944 -28.78170 -27.52098 -25.00223 -24.03341 -23.48197 -22.36327 -22.00189 -19.90385 -19.01638 -18.84242 -18.03815 -17.59449 -17.20837 -17.13324 -16.93485 -16.57206 -16.45358 -16.06153 -15.34811 -15.17112 -14.88459 -14.52582 -14.41866 -14.31332 -13.93432 -13.72267 -13.65595 -13.11871 -13.05174 -13.01479 -12.90716 -12.74756 -12.42950 -12.20974 -12.11301 -12.09504 -11.97997 -11.79232 -11.66504 -11.08376 -10.64014 -10.60832 -9.98340 -9.34149 -8.25057 -6.39652 -1.08849 -0.44783 0.38782 0.67002 1.41397 1.43838 1.46164 1.51901 1.54906 1.87656 2.38046 2.46774 2.81159 2.82836 3.04915 3.08537 3.35750 3.64248 3.91015 3.99008 4.05967 4.08148 4.18306 4.24241 4.31390 4.41902 4.45209 4.55423 4.64678 4.80490 4.84250 4.94604 5.06067 5.30669 5.30888 5.37907 5.44711 5.50345 5.69782 5.92036 6.06125 6.42567 6.75435 7.30627 8.87420 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.002383 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.542520 B =11747.885766 C =12137.229964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.009 4.009 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.019 3.981 10 C -0.570 4.570 11 S 2.396 3.604 12 O -0.986 6.986 13 O -0.977 6.977 14 C -0.504 4.504 15 C -0.046 4.046 16 C -0.031 4.031 17 O -0.192 6.192 18 C 0.226 3.774 19 C -0.050 4.050 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.094 4.094 25 N -0.489 5.489 26 H 0.266 0.734 27 H 0.005 0.995 28 H 0.000 1.000 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.200 0.800 32 H 0.172 0.828 33 H 0.268 0.732 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -27.850 1.630 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.577 4.577 8 H 0.100 0.900 9 C -0.020 4.020 10 C -0.701 4.701 11 S 2.586 3.414 12 O -0.984 6.984 13 O -0.974 6.974 14 C -0.634 4.634 15 C -0.167 4.167 16 C -0.104 4.104 17 O -0.078 6.078 18 C 0.021 3.979 19 C -0.051 4.051 20 C -0.108 4.108 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.137 4.137 24 C -0.114 4.114 25 N -0.218 5.218 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.217 0.783 32 H 0.190 0.810 33 H 0.284 0.716 34 H 0.142 0.858 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.051 -27.738 2.241 28.479 hybrid contribution 0.627 1.376 -0.719 1.674 sum 6.678 -26.363 1.522 27.238 Atomic orbital electron populations 1.70134 1.08249 1.28270 1.51032 1.26199 0.95874 1.04146 0.94473 0.85264 0.78610 0.77391 0.78681 1.19439 1.21118 1.17905 1.21578 0.94206 0.90605 1.51285 0.90013 1.18829 0.93767 0.93204 0.96153 1.30085 1.12279 1.14507 1.13270 1.08582 0.79541 0.79365 0.73930 1.93494 1.71338 1.86438 1.47091 1.93479 1.70919 1.86565 1.46436 1.28630 1.17001 1.01199 1.16563 1.20873 1.08267 0.98062 0.89521 1.25927 0.99452 0.82461 1.02539 1.84530 1.63873 1.36345 1.23088 1.24347 0.99688 0.94550 0.79277 1.17549 1.05424 0.90885 0.91241 1.21329 0.97998 1.00219 0.91292 1.21449 0.98508 0.92984 1.01148 1.21831 0.95897 0.97676 0.95705 1.21482 0.99217 0.99357 0.93624 1.21459 0.96774 0.91651 1.01498 1.70485 1.16293 1.03285 1.31787 0.92488 0.97663 0.98208 0.83340 0.82409 0.78261 0.80991 0.71629 0.85776 0.82859 0.82065 0.82087 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.98 43.47 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.08 4.09 7.74 -2.91 -0.02 4.06 16 9 C 0.02 1.00 4.98 29.85 0.15 1.15 16 10 C -0.57 -20.57 5.74 71.98 0.41 -20.16 16 11 S 2.40 85.31 4.70 -56.49 -0.27 85.04 16 12 O -0.99 -45.04 18.10 -127.37 -2.31 -47.35 16 13 O -0.98 -40.26 18.10 -127.37 -2.30 -42.56 16 14 C -0.50 -11.26 6.35 71.24 0.45 -10.80 16 15 C -0.05 -1.29 6.36 41.36 0.26 -1.02 16 16 C -0.03 -0.71 12.08 66.97 0.81 0.10 16 17 O -0.19 -4.86 10.52 -8.47 -0.09 -4.95 16 18 C 0.23 6.40 7.90 87.33 0.69 7.09 16 19 C -0.05 -1.16 5.87 -20.10 -0.12 -1.28 16 20 C -0.09 -1.91 9.69 22.53 0.22 -1.70 16 21 C -0.12 -1.78 10.03 22.23 0.22 -1.56 16 22 C -0.09 -0.99 10.04 22.33 0.22 -0.77 16 23 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 24 C -0.09 -1.61 9.72 22.52 0.22 -1.39 16 25 N -0.49 -15.63 10.91 -293.18 -3.20 -18.83 16 26 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.15 4.52 8.14 -2.39 -0.02 4.50 16 30 H 0.16 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.20 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.17 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.27 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.12 2.96 7.83 -2.91 -0.02 2.94 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.14 2.03 7.90 -2.91 -0.02 2.00 16 Total: -1.00 -89.91 352.69 -0.32 -90.24 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.07 Total: 12.00 kcal Atomic # 6 Polarization: -65.61 SS G_CDS: 4.46 Total: -61.15 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.91 Total: -76.77 kcal Atomic # 8 Polarization: -90.15 SS G_CDS: -4.70 Total: -94.85 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 85.31 SS G_CDS: -0.27 Total: 85.04 kcal Total: -89.91 -0.32 -90.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190911550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.212 kcal (2) G-P(sol) polarization free energy of solvation -89.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds