Wall clock time and date at job start Fri Apr 10 2020 15:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99649 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99607 * 3 2 1 6 6 H 1.48495 * 109.47400 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57942 * 294.48776 * 11 10 9 13 13 O 1.42097 * 108.57959 * 65.51305 * 11 10 9 14 14 C 1.81398 * 101.92304 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.35231 * 126.65969 * 90.00036 * 15 14 11 17 17 C 1.42291 * 103.93432 * 179.97438 * 16 15 14 18 18 C 1.48431 * 126.93432 * 180.02562 * 17 16 15 19 19 C 1.39319 * 120.11932 * 359.72409 * 18 17 16 20 20 C 1.38030 * 119.87447 * 179.77146 * 19 18 17 21 21 C 1.38317 * 120.12214 * 0.48232 * 20 19 18 22 22 C 1.38321 * 120.23667 * 359.79166 * 21 20 19 23 23 C 1.38017 * 120.12350 * 359.95207 * 22 21 20 24 24 N 1.30986 * 106.12500 * 359.97438 * 17 16 15 25 25 O 1.20915 * 111.42692 * 359.73016 * 24 17 16 26 26 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47378 * 60.00090 * 9 7 2 28 28 H 1.09002 * 109.46895 * 299.99670 * 9 7 2 29 29 H 1.09003 * 109.46991 * 59.99248 * 10 9 7 30 30 H 1.09003 * 109.46903 * 300.00513 * 10 9 7 31 31 H 1.08998 * 109.47096 * 300.00087 * 14 11 10 32 32 H 1.09006 * 109.47169 * 59.99793 * 14 11 10 33 33 H 1.07998 * 128.03257 * 359.97438 * 16 15 14 34 34 H 1.07998 * 120.06379 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.93338 * 180.27270 * 20 19 18 36 36 H 1.07992 * 119.87750 * 179.76854 * 21 20 19 37 37 H 1.08001 * 119.93781 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.06178 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6286 -5.3456 1.2274 13 8 0.6278 -5.3463 -1.2242 14 6 2.6877 -6.4450 0.0004 15 6 2.1122 -7.8378 0.0015 16 6 1.8028 -8.5845 -1.0827 17 6 1.3027 -9.7975 -0.5320 18 6 0.8134 -10.9820 -1.2808 19 6 0.8089 -10.9755 -2.6739 20 6 0.3572 -12.0815 -3.3652 21 6 -0.0996 -13.1911 -2.6773 22 6 -0.1026 -13.2007 -1.2941 23 6 0.3518 -12.1022 -0.5929 24 7 1.3623 -9.6581 0.7691 25 8 1.8139 -8.5797 1.0776 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.3007 -6.3056 -0.8900 32 1 3.3021 -6.3054 0.8900 33 1 1.9102 -8.3212 -2.1245 34 1 1.1619 -10.1082 -3.2121 35 1 0.3574 -12.0792 -4.4452 36 1 -0.4556 -14.0529 -3.2221 37 1 -0.4607 -14.0695 -0.7619 38 1 0.3494 -12.1109 0.4871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276717552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:14 Heat of formation + Delta-G solvation = 10.005205 kcal Electronic energy + Delta-G solvation = -23250.902339 eV Core-core repulsion = 19575.047108 eV Total energy + Delta-G solvation = -3675.855231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.14378 -39.41024 -36.63271 -35.68250 -34.78303 -33.96530 -33.82983 -31.32712 -31.25543 -30.63309 -28.51943 -25.65699 -24.44260 -23.48217 -22.22228 -21.73064 -20.44402 -18.69967 -17.93622 -17.88771 -16.92993 -16.83362 -16.08324 -15.91487 -15.79632 -15.39165 -15.01232 -14.56189 -14.39319 -14.05734 -13.76729 -13.63484 -13.48824 -13.33979 -12.92144 -12.54190 -11.83400 -11.79396 -11.69902 -11.68714 -11.63944 -11.34680 -11.24738 -11.11494 -11.06098 -11.00429 -10.45224 -10.42208 -9.83653 -9.55013 -9.30368 -9.16988 -8.82888 -8.53155 -6.15277 -4.21642 0.07081 0.53703 1.05265 1.34463 2.21862 2.60318 3.06251 3.24192 3.30775 3.33022 3.54414 3.67205 3.78146 4.08113 4.21828 4.34080 4.54918 4.61485 4.69883 4.75134 4.75800 4.90893 5.05904 5.13724 5.19218 5.19911 5.36481 5.50579 5.52899 5.57658 5.68502 5.69234 6.09835 6.14296 6.17137 6.38468 6.57616 7.28768 7.33675 7.76921 7.94317 8.12315 8.81899 9.43222 10.95489 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002331 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.946260 B =12007.951896 C =12316.868710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.565 4.565 11 S 2.395 3.605 12 O -0.929 6.929 13 O -0.931 6.931 14 C -0.551 4.551 15 C -0.021 4.021 16 C -0.200 4.200 17 C 0.055 3.945 18 C -0.020 4.020 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.092 4.092 24 N -0.348 5.348 25 O 0.119 5.881 26 H 0.266 0.734 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.183 0.817 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -23.274 -5.041 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.699 4.699 11 S 2.577 3.423 12 O -0.926 6.926 13 O -0.928 6.928 14 C -0.673 4.673 15 C -0.084 4.084 16 C -0.222 4.222 17 C -0.101 4.101 18 C -0.021 4.021 19 C -0.112 4.112 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.111 4.111 24 N -0.048 5.048 25 O 0.048 5.952 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.200 0.800 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.248 -24.185 -3.968 24.874 hybrid contribution 1.529 1.347 -0.727 2.163 sum 5.777 -22.838 -4.694 24.021 Atomic orbital electron populations 1.69961 1.06117 1.27264 1.49274 1.25077 0.94993 0.99566 0.94874 0.86453 0.79685 0.82802 0.78234 1.20457 1.21003 1.19740 1.20994 0.93077 0.89616 1.52523 0.91929 1.19022 0.92716 0.89974 0.99396 1.30213 1.13413 1.15807 1.10426 1.09240 0.78290 0.78936 0.75826 1.93580 1.68099 1.85595 1.45371 1.93560 1.68072 1.85685 1.45506 1.29334 1.21176 1.03139 1.13699 1.22974 1.03468 0.95292 0.86710 1.22564 1.05439 0.92912 1.01327 1.21960 1.02589 0.95967 0.89547 1.17701 1.00975 0.90972 0.92475 1.21188 0.98701 0.98898 0.92436 1.21105 0.99179 0.93203 1.00232 1.21300 0.98797 0.98406 0.94409 1.21117 1.00063 0.98294 0.94391 1.21254 0.97036 0.92342 1.00496 1.74112 1.15174 0.99851 1.15645 1.84857 1.58665 1.19163 1.32553 0.92469 0.94500 0.94462 0.85709 0.85762 0.82143 0.82594 0.79966 0.85175 0.85290 0.85673 0.85493 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.89 9.11 -34.44 -0.31 -14.21 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.57 -9.51 5.74 37.16 0.21 -9.30 16 11 S 2.40 38.34 4.70 -107.50 -0.51 37.84 16 12 O -0.93 -18.49 18.10 -57.83 -1.05 -19.54 16 13 O -0.93 -17.70 18.10 -57.83 -1.05 -18.74 16 14 C -0.55 -5.72 6.37 36.01 0.23 -5.49 16 15 C -0.02 -0.27 6.73 -35.38 -0.24 -0.51 16 16 C -0.20 -2.47 10.45 -39.10 -0.41 -2.88 16 17 C 0.06 0.75 7.06 -82.47 -0.58 0.17 16 18 C -0.02 -0.24 5.88 -104.89 -0.62 -0.85 16 19 C -0.09 -0.88 9.60 -39.26 -0.38 -1.26 16 20 C -0.12 -0.93 10.03 -39.63 -0.40 -1.33 16 21 C -0.11 -0.82 10.04 -39.52 -0.40 -1.22 16 22 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 23 C -0.09 -0.97 9.70 -39.26 -0.38 -1.35 16 24 N -0.35 -5.21 11.82 33.32 0.39 -4.82 16 25 O 0.12 1.77 11.18 17.11 0.19 1.96 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.12 1.78 8.14 -51.92 -0.42 1.35 16 30 H 0.12 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.16 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.16 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.18 1.69 7.58 -52.49 -0.40 1.29 16 34 H 0.13 1.01 7.23 -52.49 -0.38 0.63 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.35 7.90 -52.48 -0.41 0.94 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -36.55 351.00 -9.45 -46.00 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.54 Total: -0.80 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: -3.90 Total: -37.60 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 1.13 Total: -30.06 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.90 Total: -36.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 38.34 SS G_CDS: -0.51 Total: 37.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.55 -9.45 -46.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276717552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.002 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds