Wall clock time and date at job start Fri Apr 10 2020 15:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99649 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99607 * 3 2 1 6 6 H 1.48495 * 109.47400 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57942 * 294.48776 * 11 10 9 13 13 O 1.42097 * 108.57959 * 65.51305 * 11 10 9 14 14 C 1.81398 * 101.92304 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.35231 * 126.65969 * 90.00036 * 15 14 11 17 17 C 1.42291 * 103.93432 * 179.97438 * 16 15 14 18 18 C 1.48431 * 126.93432 * 180.02562 * 17 16 15 19 19 C 1.39319 * 120.11932 * 359.72409 * 18 17 16 20 20 C 1.38030 * 119.87447 * 179.77146 * 19 18 17 21 21 C 1.38317 * 120.12214 * 0.48232 * 20 19 18 22 22 C 1.38321 * 120.23667 * 359.79166 * 21 20 19 23 23 C 1.38017 * 120.12350 * 359.95207 * 22 21 20 24 24 N 1.30986 * 106.12500 * 359.97438 * 17 16 15 25 25 O 1.20915 * 111.42692 * 359.73016 * 24 17 16 26 26 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47378 * 60.00090 * 9 7 2 28 28 H 1.09002 * 109.46895 * 299.99670 * 9 7 2 29 29 H 1.09003 * 109.46991 * 59.99248 * 10 9 7 30 30 H 1.09003 * 109.46903 * 300.00513 * 10 9 7 31 31 H 1.08998 * 109.47096 * 300.00087 * 14 11 10 32 32 H 1.09006 * 109.47169 * 59.99793 * 14 11 10 33 33 H 1.07998 * 128.03257 * 359.97438 * 16 15 14 34 34 H 1.07998 * 120.06379 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.93338 * 180.27270 * 20 19 18 36 36 H 1.07992 * 119.87750 * 179.76854 * 21 20 19 37 37 H 1.08001 * 119.93781 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.06178 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6286 -5.3456 1.2274 13 8 0.6278 -5.3463 -1.2242 14 6 2.6877 -6.4450 0.0004 15 6 2.1122 -7.8378 0.0015 16 6 1.8028 -8.5845 -1.0827 17 6 1.3027 -9.7975 -0.5320 18 6 0.8134 -10.9820 -1.2808 19 6 0.8089 -10.9755 -2.6739 20 6 0.3572 -12.0815 -3.3652 21 6 -0.0996 -13.1911 -2.6773 22 6 -0.1026 -13.2007 -1.2941 23 6 0.3518 -12.1022 -0.5929 24 7 1.3623 -9.6581 0.7691 25 8 1.8139 -8.5797 1.0776 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.3007 -6.3056 -0.8900 32 1 3.3021 -6.3054 0.8900 33 1 1.9102 -8.3212 -2.1245 34 1 1.1619 -10.1082 -3.2121 35 1 0.3574 -12.0792 -4.4452 36 1 -0.4556 -14.0529 -3.2221 37 1 -0.4607 -14.0695 -0.7619 38 1 0.3494 -12.1109 0.4871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276717552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:13 Heat of formation + Delta-G solvation = -15.432698 kcal Electronic energy + Delta-G solvation = -23252.005410 eV Core-core repulsion = 19575.047108 eV Total energy + Delta-G solvation = -3676.958302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.14842 -40.07876 -38.02867 -37.07083 -35.84728 -35.69135 -34.79888 -33.09832 -31.97882 -31.39105 -29.51967 -27.51479 -25.30291 -24.33271 -23.47674 -22.96945 -21.34172 -19.96700 -19.12228 -18.86386 -18.62823 -17.58710 -17.28147 -17.16206 -16.97946 -16.56754 -16.36588 -15.81621 -15.22502 -15.18275 -14.83472 -14.44467 -14.40388 -14.35428 -14.06268 -13.79283 -13.68210 -13.14198 -13.06648 -12.88984 -12.72248 -12.65454 -12.51486 -12.31341 -12.17036 -12.06119 -11.95397 -11.93660 -11.67893 -11.09667 -10.61354 -10.46300 -9.96088 -9.59803 -8.22687 -6.36660 -1.18794 -0.25518 0.39717 0.39789 1.35407 1.43864 1.45653 1.56588 1.63422 1.89580 2.40516 2.68559 2.83249 2.86088 3.01187 3.11221 3.15020 3.66392 3.79918 3.95887 4.03709 4.05340 4.09014 4.17214 4.25715 4.32667 4.43166 4.50561 4.64499 4.75618 4.86121 4.94292 5.05914 5.34926 5.35702 5.45147 5.46601 5.51467 5.72930 5.95722 6.08904 6.79073 6.95945 7.33703 8.89593 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002331 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.946260 B =12007.951896 C =12316.868710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.016 3.984 10 C -0.565 4.565 11 S 2.396 3.604 12 O -0.984 6.984 13 O -0.973 6.973 14 C -0.511 4.511 15 C -0.041 4.041 16 C -0.197 4.197 17 C 0.049 3.951 18 C -0.052 4.052 19 C -0.100 4.100 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.112 4.112 24 N -0.376 5.376 25 O 0.099 5.901 26 H 0.265 0.735 27 H 0.005 0.995 28 H 0.001 0.999 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.214 0.786 32 H 0.197 0.803 33 H 0.213 0.787 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 -24.562 -6.852 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.102 0.898 9 C -0.022 4.022 10 C -0.697 4.697 11 S 2.584 3.416 12 O -0.981 6.981 13 O -0.970 6.970 14 C -0.640 4.640 15 C -0.104 4.104 16 C -0.219 4.219 17 C -0.107 4.107 18 C -0.053 4.053 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.131 4.131 24 N -0.079 5.079 25 O 0.030 5.970 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.231 0.769 32 H 0.214 0.786 33 H 0.230 0.770 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.070 -25.402 -5.768 26.991 hybrid contribution 0.634 1.513 -0.229 1.656 sum 7.704 -23.889 -5.997 25.807 Atomic orbital electron populations 1.70130 1.08226 1.28187 1.51171 1.26172 0.95827 1.04077 0.94619 0.85297 0.78673 0.77586 0.78588 1.19593 1.21383 1.17802 1.21588 0.94276 0.90543 1.51020 0.89826 1.18852 0.93870 0.93186 0.96296 1.30055 1.12159 1.13643 1.13809 1.08667 0.79348 0.79555 0.73998 1.93518 1.71010 1.86517 1.47064 1.93506 1.70583 1.86438 1.46459 1.29022 1.17911 0.98489 1.18541 1.23451 1.04124 0.96252 0.86615 1.23065 1.04076 0.92148 1.02657 1.22474 1.01845 0.97072 0.89338 1.17924 1.02953 0.90912 0.93543 1.21458 0.98656 1.00174 0.91602 1.21505 0.97989 0.92530 1.01717 1.21728 0.97299 0.99243 0.94091 1.21410 0.99459 0.98159 0.95198 1.21341 0.98209 0.93311 1.00252 1.74098 1.16514 1.00463 1.16856 1.84815 1.59225 1.19463 1.33486 0.92582 0.97655 0.98022 0.82634 0.82109 0.76877 0.78590 0.77000 0.83739 0.82447 0.82601 0.83425 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.54 -28.48 9.11 25.60 0.23 -28.24 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.02 0.83 4.98 29.85 0.15 0.97 16 10 C -0.56 -18.14 5.74 71.98 0.41 -17.73 16 11 S 2.40 75.47 4.70 -56.49 -0.27 75.20 16 12 O -0.98 -40.65 18.10 -127.37 -2.31 -42.96 16 13 O -0.97 -37.41 18.10 -127.37 -2.30 -39.72 16 14 C -0.51 -8.65 6.37 71.24 0.45 -8.20 16 15 C -0.04 -0.99 6.73 24.99 0.17 -0.82 16 16 C -0.20 -4.53 10.45 22.58 0.24 -4.29 16 17 C 0.05 1.30 7.06 43.00 0.30 1.61 16 18 C -0.05 -1.20 5.88 -20.04 -0.12 -1.32 16 19 C -0.10 -1.72 9.60 22.48 0.22 -1.50 16 20 C -0.12 -1.53 10.03 22.24 0.22 -1.31 16 21 C -0.11 -1.27 10.04 22.31 0.22 -1.04 16 22 C -0.12 -1.89 10.03 22.24 0.22 -1.67 16 23 C -0.11 -2.38 9.70 22.48 0.22 -2.17 16 24 N -0.38 -11.55 11.82 -49.44 -0.58 -12.14 16 25 O 0.10 2.93 11.18 71.40 0.80 3.73 16 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.16 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.16 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.21 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.20 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.21 3.28 7.58 -2.91 -0.02 3.26 16 34 H 0.14 1.92 7.23 -2.91 -0.02 1.90 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.12 2.63 7.90 -2.91 -0.02 2.61 16 Total: -1.00 -87.01 351.00 2.13 -84.88 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.07 Total: 9.03 kcal Atomic # 6 Polarization: -69.14 SS G_CDS: 3.41 Total: -65.74 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -0.30 Total: -68.82 kcal Atomic # 8 Polarization: -75.13 SS G_CDS: -3.81 Total: -78.95 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 75.47 SS G_CDS: -0.27 Total: 75.20 kcal Total: -87.01 2.13 -84.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276717552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.449 kcal (2) G-P(sol) polarization free energy of solvation -87.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds