Wall clock time and date at job start Fri Apr 10 2020 15:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48503 * 109.47103 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47012 * 120.00034 * 3 2 1 6 6 H 1.48504 * 109.46941 * 239.99960 * 3 2 1 7 7 C 1.37872 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99982 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99680 * 359.97438 * 7 2 1 10 10 H 1.08989 * 109.47534 * 300.00095 * 9 7 2 11 11 O 1.42900 * 109.46663 * 60.00763 * 9 7 2 12 12 C 1.53004 * 109.46688 * 180.02562 * 9 7 2 13 13 N 1.46503 * 109.46780 * 180.02562 * 12 9 7 14 14 N 1.40275 * 126.57370 * 270.02230 * 13 12 9 15 15 C 1.30152 * 107.74787 * 179.97438 * 14 13 12 16 16 C 1.47905 * 125.46285 * 180.02562 * 15 14 13 17 17 C 1.39556 * 120.14290 * 303.10330 * 16 15 14 18 18 C 1.37946 * 119.85231 * 179.97438 * 17 16 15 19 19 C 1.38366 * 120.14483 * 359.97438 * 18 17 16 20 20 C 1.38322 * 120.28792 * 0.02562 * 19 18 17 21 21 C 1.38001 * 120.14063 * 359.69784 * 20 19 18 22 22 N 1.48021 * 120.07376 * 180.27712 * 21 20 19 23 23 O 1.21798 * 120.00344 * 353.71958 * 22 21 20 24 24 O 1.21806 * 119.99673 * 173.71570 * 22 21 20 25 25 O 1.35090 * 109.07216 * 0.02562 * 15 14 13 26 26 C 1.34322 * 108.86283 * 359.75347 * 25 15 14 27 27 O 1.21686 * 126.26795 * 180.25637 * 26 25 15 28 28 H 0.97000 * 119.99843 * 179.97438 * 1 2 3 29 29 H 0.96699 * 114.00529 * 59.99648 * 11 9 7 30 30 H 1.09002 * 109.47346 * 300.00275 * 12 9 7 31 31 H 1.08996 * 109.46960 * 60.00317 * 12 9 7 32 32 H 1.07994 * 120.06916 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.92331 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.85954 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.93377 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5745 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 7 1.5129 -4.9308 -0.0012 14 7 1.0942 -5.6547 1.1250 15 6 0.4781 -6.7213 0.7045 16 6 -0.1236 -7.7610 1.5673 17 6 0.6587 -8.4265 2.5122 18 6 0.0912 -9.3949 3.3142 19 6 -1.2506 -9.7065 3.1837 20 6 -2.0314 -9.0506 2.2491 21 6 -1.4773 -8.0758 1.4446 22 7 -2.3156 -7.3706 0.4493 23 8 -3.4647 -7.7269 0.2589 24 8 -1.8564 -6.4338 -0.1794 25 8 0.4763 -6.7263 -0.6464 26 6 1.1070 -5.6247 -1.0856 27 8 1.2825 -5.3109 -2.2481 28 1 -0.4850 -0.8401 -0.0004 29 1 0.9210 -2.5290 -1.9984 30 1 2.8721 -3.6042 -0.8905 31 1 2.8720 -3.6042 0.8895 32 1 1.7059 -8.1839 2.6152 33 1 0.6956 -9.9109 4.0455 34 1 -1.6900 -10.4657 3.8136 35 1 -3.0781 -9.2986 2.1518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567844008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:19 Heat of formation + Delta-G solvation = -21.626641 kcal Electronic energy + Delta-G solvation = -27052.488068 eV Core-core repulsion = 22828.967962 eV Total energy + Delta-G solvation = -4223.520106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16288 -42.27661 -39.88283 -37.68892 -36.72466 -36.66438 -35.24966 -33.32003 -32.52523 -32.14948 -31.03678 -28.54638 -26.89490 -25.38745 -24.31259 -23.01225 -22.72175 -21.98225 -21.13866 -19.62328 -18.74143 -18.05756 -17.64145 -17.53670 -17.23045 -16.79211 -16.10290 -15.83746 -15.72812 -15.34630 -14.84848 -14.39044 -13.95396 -13.81320 -13.73683 -13.16603 -13.02609 -12.80843 -12.41171 -12.07802 -11.91723 -11.72630 -11.64213 -11.35583 -11.28939 -11.16811 -10.79042 -10.51038 -10.25974 -10.20653 -10.12589 -10.07186 -9.58949 -8.66137 -8.52794 -8.02002 -6.41085 -4.27676 -0.66042 0.12699 1.00592 1.09424 1.51055 1.96837 2.37334 2.66900 2.70229 3.40590 3.42512 3.61589 3.73295 3.90043 4.19750 4.25700 4.32758 4.41026 4.49046 4.77751 4.99862 5.09588 5.25582 5.30291 5.36731 5.44545 5.67415 5.76532 5.83919 6.03933 6.14045 6.16217 6.41329 7.28819 7.44795 7.61390 7.80315 7.93384 8.24848 8.77763 9.08547 9.60013 10.99150 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.003476 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.195899 B = 8053.521615 C = 8217.006108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.038 3.962 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.655 4.655 8 H 0.054 0.946 9 C 0.200 3.800 10 H 0.056 0.944 11 O -0.574 6.574 12 C 0.127 3.873 13 N -0.429 5.429 14 N -0.224 5.224 15 C 0.245 3.755 16 C 0.049 3.951 17 C -0.072 4.072 18 C -0.068 4.068 19 C -0.098 4.098 20 C -0.054 4.054 21 C -0.013 4.013 22 N 0.019 4.981 23 O -0.147 6.147 24 O -0.132 6.132 25 O -0.259 6.259 26 C 0.615 3.385 27 O -0.478 6.478 28 H 0.286 0.714 29 H 0.359 0.641 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -23.225 10.157 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.693 4.693 8 H 0.073 0.927 9 C 0.142 3.858 10 H 0.074 0.926 11 O -0.378 6.378 12 C 0.010 3.990 13 N -0.261 5.261 14 N -0.055 5.055 15 C 0.020 3.980 16 C 0.046 3.954 17 C -0.091 4.091 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.073 4.073 21 C -0.097 4.097 22 N 0.541 4.459 23 O -0.364 6.364 24 O -0.350 6.350 25 O -0.155 6.155 26 C 0.367 3.633 27 O -0.359 6.359 28 H 0.098 0.902 29 H 0.205 0.795 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.976 -21.349 10.936 24.007 hybrid contribution 0.242 -1.648 -1.218 2.063 sum 1.218 -22.997 9.718 24.996 Atomic orbital electron populations 1.70620 1.06969 1.32523 1.41695 1.25827 0.96438 1.02490 0.92479 0.83552 0.74902 0.75206 0.76553 1.20665 1.21372 1.21263 1.22240 0.94412 0.91740 1.60866 0.92749 1.19980 0.88848 0.90420 0.86571 0.92588 1.86522 1.38992 1.96288 1.16017 1.22951 0.94991 0.77069 1.04016 1.50430 1.52169 1.22745 1.00753 1.77350 1.13207 1.02321 1.12607 1.22829 0.99522 0.95337 0.80321 1.16981 0.90045 0.93396 0.94969 1.21377 1.01011 0.94038 0.92722 1.21592 0.95255 0.94761 0.97029 1.21450 0.93661 0.99452 0.97121 1.21094 1.02564 0.91419 0.92247 1.21286 0.90564 1.00779 0.97084 1.43523 1.01205 1.00546 1.00611 1.94517 1.01832 1.69538 1.70484 1.94730 1.75917 1.18391 1.45965 1.85180 1.66913 1.42989 1.20462 1.19116 0.79094 0.78339 0.86755 1.91158 1.60733 1.69335 1.14629 0.90220 0.79538 0.88564 0.88501 0.82424 0.82784 0.82746 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.34 13.53 55.43 0.75 -26.59 16 2 C 0.04 1.07 5.40 -17.82 -0.10 0.98 16 3 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.65 -17.87 8.76 -34.44 -0.30 -18.17 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.20 5.12 2.70 -27.88 -0.08 5.04 16 10 H 0.06 1.58 8.01 -51.94 -0.42 1.16 16 11 O -0.57 -15.49 11.56 -35.23 -0.41 -15.90 16 12 C 0.13 2.65 6.02 -4.04 -0.02 2.62 16 13 N -0.43 -8.72 3.55 -65.26 -0.23 -8.95 16 14 N -0.22 -4.01 12.60 31.97 0.40 -3.61 16 15 C 0.25 3.98 5.97 -14.31 -0.09 3.89 16 16 C 0.05 0.58 5.87 -104.97 -0.62 -0.04 16 17 C -0.07 -0.50 9.79 -39.20 -0.38 -0.88 16 18 C -0.07 -0.25 10.03 -39.64 -0.40 -0.65 16 19 C -0.10 -0.36 10.04 -39.50 -0.40 -0.76 16 20 C -0.05 -0.38 9.55 -39.64 -0.38 -0.76 16 21 C -0.01 -0.15 6.87 -79.56 -0.55 -0.70 16 22 N 0.02 0.30 4.45 34.15 0.15 0.45 16 23 O -0.15 -2.24 18.47 -29.46 -0.54 -2.79 16 24 O -0.13 -2.61 15.12 -36.82 -0.56 -3.17 16 25 O -0.26 -4.94 8.81 -28.76 -0.25 -5.19 16 26 C 0.61 13.13 8.89 54.15 0.48 13.61 16 27 O -0.48 -11.24 17.92 -19.00 -0.34 -11.58 16 28 H 0.29 9.13 6.47 -40.82 -0.26 8.87 16 29 H 0.36 9.08 9.04 45.56 0.41 9.49 16 30 H 0.10 1.92 8.12 -51.93 -0.42 1.50 16 31 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 32 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.15 0.03 8.06 -52.48 -0.42 -0.39 16 34 H 0.15 0.04 8.06 -52.49 -0.42 -0.38 16 35 H 0.16 0.87 7.62 -52.48 -0.40 0.47 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -37.00 326.42 -6.00 -43.00 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -1.98 Total: 5.55 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.82 Total: 4.19 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 1.07 Total: -38.70 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -2.10 Total: -38.62 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.00 -6.00 -43.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567844008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.369 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds