Wall clock time and date at job start Fri Apr 10 2020 15:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48503 * 109.47103 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47012 * 120.00034 * 3 2 1 6 6 H 1.48504 * 109.46941 * 239.99960 * 3 2 1 7 7 C 1.37872 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99982 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99680 * 359.97438 * 7 2 1 10 10 H 1.08989 * 109.47534 * 300.00095 * 9 7 2 11 11 O 1.42900 * 109.46663 * 60.00763 * 9 7 2 12 12 C 1.53004 * 109.46688 * 180.02562 * 9 7 2 13 13 N 1.46503 * 109.46780 * 180.02562 * 12 9 7 14 14 N 1.40275 * 126.57370 * 270.02230 * 13 12 9 15 15 C 1.30152 * 107.74787 * 179.97438 * 14 13 12 16 16 C 1.47905 * 125.46285 * 180.02562 * 15 14 13 17 17 C 1.39556 * 120.14290 * 303.10330 * 16 15 14 18 18 C 1.37946 * 119.85231 * 179.97438 * 17 16 15 19 19 C 1.38366 * 120.14483 * 359.97438 * 18 17 16 20 20 C 1.38322 * 120.28792 * 0.02562 * 19 18 17 21 21 C 1.38001 * 120.14063 * 359.69784 * 20 19 18 22 22 N 1.48021 * 120.07376 * 180.27712 * 21 20 19 23 23 O 1.21798 * 120.00344 * 353.71958 * 22 21 20 24 24 O 1.21806 * 119.99673 * 173.71570 * 22 21 20 25 25 O 1.35090 * 109.07216 * 0.02562 * 15 14 13 26 26 C 1.34322 * 108.86283 * 359.75347 * 25 15 14 27 27 O 1.21686 * 126.26795 * 180.25637 * 26 25 15 28 28 H 0.97000 * 119.99843 * 179.97438 * 1 2 3 29 29 H 0.96699 * 114.00529 * 59.99648 * 11 9 7 30 30 H 1.09002 * 109.47346 * 300.00275 * 12 9 7 31 31 H 1.08996 * 109.46960 * 60.00317 * 12 9 7 32 32 H 1.07994 * 120.06916 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.92331 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.85954 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.93377 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5745 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 7 1.5129 -4.9308 -0.0012 14 7 1.0942 -5.6547 1.1250 15 6 0.4781 -6.7213 0.7045 16 6 -0.1236 -7.7610 1.5673 17 6 0.6587 -8.4265 2.5122 18 6 0.0912 -9.3949 3.3142 19 6 -1.2506 -9.7065 3.1837 20 6 -2.0314 -9.0506 2.2491 21 6 -1.4773 -8.0758 1.4446 22 7 -2.3156 -7.3706 0.4493 23 8 -3.4647 -7.7269 0.2589 24 8 -1.8564 -6.4338 -0.1794 25 8 0.4763 -6.7263 -0.6464 26 6 1.1070 -5.6247 -1.0856 27 8 1.2825 -5.3109 -2.2481 28 1 -0.4850 -0.8401 -0.0004 29 1 0.9210 -2.5290 -1.9984 30 1 2.8721 -3.6042 -0.8905 31 1 2.8720 -3.6042 0.8895 32 1 1.7059 -8.1839 2.6152 33 1 0.6956 -9.9109 4.0455 34 1 -1.6900 -10.4657 3.8136 35 1 -3.0781 -9.2986 2.1518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567844008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:18 Heat of formation + Delta-G solvation = -51.901538 kcal Electronic energy + Delta-G solvation = -27053.800886 eV Core-core repulsion = 22828.967962 eV Total energy + Delta-G solvation = -4224.832924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.63024 -43.40280 -40.57412 -39.36666 -38.60043 -37.86695 -36.98644 -34.40038 -34.30540 -33.23259 -32.34428 -30.18517 -27.96349 -27.07178 -25.59121 -24.43090 -23.79361 -23.30940 -22.78455 -20.61434 -19.90464 -19.65544 -19.03428 -18.85979 -18.75914 -18.08259 -17.68361 -17.24831 -16.65221 -16.35946 -16.07992 -15.82721 -15.70338 -15.37723 -15.01213 -14.66515 -14.23714 -14.17873 -13.57409 -13.42422 -13.38707 -13.16703 -12.91792 -12.78535 -12.59041 -12.48543 -12.46219 -12.29890 -12.17945 -11.93618 -11.62272 -10.83878 -10.74997 -10.69512 -10.41367 -9.89723 -8.69481 -6.56843 -1.59438 -0.50636 0.08183 0.16364 0.23681 0.52158 1.01002 1.21487 1.54004 1.62566 1.81261 2.12551 2.55253 2.82504 3.07149 3.10894 3.29015 3.54346 3.76073 3.79388 3.85711 3.92092 4.02924 4.09584 4.20809 4.42442 4.47286 4.61940 4.70971 4.89630 4.98425 4.99548 5.18405 5.38191 5.67277 6.02779 6.07383 6.19440 6.27765 6.42540 6.98536 7.41612 8.67632 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.003476 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.195899 B = 8053.521615 C = 8217.006108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 1.124 2.876 4 H -0.289 1.289 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.656 4.656 8 H 0.071 0.929 9 C 0.198 3.802 10 H 0.020 0.980 11 O -0.591 6.591 12 C 0.142 3.858 13 N -0.437 5.437 14 N -0.249 5.249 15 C 0.271 3.729 16 C 0.004 3.996 17 C -0.062 4.062 18 C -0.038 4.038 19 C -0.069 4.069 20 C -0.046 4.046 21 C -0.041 4.041 22 N 0.022 4.978 23 O -0.108 6.108 24 O -0.252 6.252 25 O -0.265 6.265 26 C 0.607 3.393 27 O -0.513 6.513 28 H 0.263 0.737 29 H 0.363 0.637 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.173 0.827 33 H 0.208 0.792 34 H 0.209 0.791 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -26.634 13.705 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.220 4.220 3 Si 0.944 3.056 4 H -0.215 1.215 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.694 4.694 8 H 0.089 0.911 9 C 0.140 3.860 10 H 0.037 0.963 11 O -0.396 6.396 12 C 0.024 3.976 13 N -0.267 5.267 14 N -0.078 5.078 15 C 0.046 3.954 16 C 0.000 4.000 17 C -0.082 4.082 18 C -0.055 4.055 19 C -0.087 4.087 20 C -0.065 4.065 21 C -0.126 4.126 22 N 0.537 4.463 23 O -0.343 6.343 24 O -0.444 6.444 25 O -0.161 6.161 26 C 0.360 3.640 27 O -0.397 6.397 28 H 0.073 0.927 29 H 0.209 0.791 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.191 0.809 33 H 0.225 0.775 34 H 0.226 0.774 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.344 -24.644 14.448 28.663 hybrid contribution -0.339 -1.060 -2.038 2.322 sum 2.005 -25.705 12.411 28.614 Atomic orbital electron populations 1.70780 1.08425 1.31020 1.45148 1.27520 0.96303 1.06937 0.91247 0.82892 0.73980 0.70451 0.78323 1.21532 1.18655 1.19169 1.22648 0.95340 0.92314 1.59104 0.91053 1.19876 0.88848 0.92460 0.84774 0.96251 1.86491 1.39980 1.96524 1.16649 1.22607 0.93599 0.75800 1.05580 1.50242 1.52464 1.22682 1.01356 1.77357 1.16085 1.03102 1.11300 1.24003 0.96716 0.95304 0.79359 1.17359 0.90802 0.94796 0.97007 1.21791 1.01490 0.93750 0.91179 1.22273 0.95667 0.92072 0.95506 1.22155 0.93186 0.98320 0.95019 1.21619 1.03985 0.89525 0.91401 1.21562 0.90230 1.02881 0.97909 1.44145 1.01400 1.00013 1.00784 1.94423 1.02631 1.67933 1.69288 1.94751 1.76744 1.22361 1.50495 1.85165 1.66298 1.41994 1.22617 1.19240 0.79141 0.78944 0.86692 1.91096 1.62212 1.70546 1.15823 0.92687 0.79055 0.87680 0.86138 0.80913 0.77514 0.77447 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.30 13.53 21.45 0.29 -59.01 16 2 C -0.02 -1.05 5.40 84.65 0.46 -0.60 16 3 Si 1.12 49.80 29.90 68.60 2.05 51.85 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.66 -36.53 8.76 25.60 0.22 -36.30 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 9 C 0.20 10.71 2.70 29.85 0.08 10.79 16 10 H 0.02 1.19 8.01 -2.39 -0.02 1.17 16 11 O -0.59 -34.27 11.56 -148.98 -1.72 -35.99 16 12 C 0.14 6.14 6.02 86.38 0.52 6.66 16 13 N -0.44 -18.85 3.55 -590.66 -2.10 -20.94 16 14 N -0.25 -9.40 12.60 -167.01 -2.10 -11.51 16 15 C 0.27 9.29 5.97 87.50 0.52 9.81 16 16 C 0.00 0.09 5.87 -20.09 -0.12 -0.03 16 17 C -0.06 -0.64 9.79 22.52 0.22 -0.42 16 18 C -0.04 -0.01 10.03 22.23 0.22 0.21 16 19 C -0.07 -0.02 10.04 22.32 0.22 0.21 16 20 C -0.05 -0.46 9.55 22.23 0.21 -0.24 16 21 C -0.04 -0.93 6.87 36.63 0.25 -0.68 16 22 N 0.02 0.75 4.45 -45.86 -0.20 0.54 16 23 O -0.11 -3.35 18.47 18.89 0.35 -3.00 16 24 O -0.25 -11.10 15.12 25.91 0.39 -10.71 16 25 O -0.26 -10.96 8.81 20.22 0.18 -10.78 16 26 C 0.61 28.02 8.89 129.76 1.15 29.17 16 27 O -0.51 -26.02 17.92 18.83 0.34 -25.69 16 28 H 0.26 17.93 6.47 -92.71 -0.60 17.33 16 29 H 0.36 19.72 9.04 -74.06 -0.67 19.05 16 30 H 0.11 4.31 8.12 -2.39 -0.02 4.29 16 31 H 0.12 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.21 -1.86 8.06 -2.91 -0.02 -1.89 16 34 H 0.21 -1.90 8.06 -2.91 -0.02 -1.93 16 35 H 0.18 1.12 7.62 -2.91 -0.02 1.10 16 Total: -1.00 -92.70 326.42 2.12 -90.58 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.68 Total: 16.09 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 3.97 Total: 18.57 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -4.11 Total: -90.91 kcal Atomic # 8 Polarization: -85.71 SS G_CDS: -0.47 Total: -86.18 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -92.70 2.12 -90.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567844008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.676 kcal (2) G-P(sol) polarization free energy of solvation -92.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds