Wall clock time and date at job start Fri Apr 10 2020 15:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46628 * 269.99374 * 3 2 1 5 5 H 1.48499 * 109.47219 * 29.99219 * 3 2 1 6 6 H 1.48495 * 109.47059 * 149.99544 * 3 2 1 7 7 C 1.37874 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00437 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47143 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47172 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54020 * 68.38164 * 12 11 10 14 14 O 1.42098 * 110.54662 * 291.62731 * 12 11 10 15 15 O 1.52204 * 104.44924 * 179.97438 * 12 11 10 16 16 C 1.35889 * 113.99481 * 75.00235 * 15 12 11 17 17 C 1.39847 * 119.52050 * 269.97943 * 16 15 12 18 18 C 1.36108 * 120.96307 * 179.97438 * 17 16 15 19 19 C 1.40281 * 119.55405 * 0.03794 * 18 17 16 20 20 C 1.40685 * 122.15004 * 180.02562 * 19 18 17 21 21 C 1.36183 * 118.68106 * 179.97438 * 20 19 18 22 22 N 1.32601 * 121.88108 * 359.97438 * 21 20 19 23 23 C 1.31231 * 122.77646 * 0.02562 * 22 21 20 24 24 C 1.40476 * 119.87946 * 359.97438 * 23 22 21 25 25 C 1.36649 * 119.51752 * 90.00228 * 16 15 12 26 26 H 0.96993 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47267 * 60.00575 * 9 7 2 28 28 H 1.08997 * 109.47201 * 299.99510 * 9 7 2 29 29 H 1.08999 * 109.47247 * 60.00027 * 10 9 7 30 30 H 1.09003 * 109.47195 * 299.99774 * 10 9 7 31 31 H 1.08999 * 109.46771 * 60.00049 * 11 10 9 32 32 H 1.09003 * 109.47147 * 300.00117 * 11 10 9 33 33 H 1.08001 * 119.51547 * 0.02562 * 17 16 15 34 34 H 1.07996 * 120.22298 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.65823 * 359.69561 * 20 19 18 36 36 H 1.08004 * 119.05580 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.06399 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.26175 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 16 6.1562 -4.3468 0.0016 13 8 5.8601 -4.9807 -1.2353 14 8 5.8601 -4.9800 1.2387 15 8 7.6724 -4.2136 0.0008 16 6 8.1953 -3.8446 1.1995 17 6 8.3578 -2.4867 1.4918 18 6 8.8780 -2.0842 2.6834 19 6 9.2577 -3.0449 3.6325 20 6 9.8004 -2.6902 4.8810 21 6 10.1442 -3.6811 5.7496 22 7 9.9810 -4.9625 5.4502 23 6 9.4815 -5.3668 4.3060 24 6 9.0944 -4.4240 3.3393 25 6 8.5551 -4.8058 2.1017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6805 -0.8888 29 1 3.6585 -3.1501 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9149 -2.1228 0.8910 32 1 5.9149 -2.1226 -0.8890 33 1 8.0655 -1.7466 0.7615 34 1 8.9979 -1.0323 2.8967 35 1 9.9456 -1.6527 5.1436 36 1 10.5618 -3.4156 6.7096 37 1 9.3675 -6.4224 4.1083 38 1 8.4245 -5.8513 1.8642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777955644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:55 Heat of formation + Delta-G solvation = -56.719185 kcal Electronic energy + Delta-G solvation = -24103.923146 eV Core-core repulsion = 20425.174528 eV Total energy + Delta-G solvation = -3678.748618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75800 -40.37404 -37.26026 -37.03473 -36.09199 -34.93386 -33.39286 -32.31174 -31.48455 -29.84277 -28.52533 -24.97683 -24.47433 -23.66386 -22.90581 -21.34941 -20.38626 -18.94785 -18.16108 -17.86042 -17.72958 -16.92535 -16.50424 -16.30886 -15.50679 -15.37248 -14.80885 -14.67759 -14.59157 -14.25283 -14.13135 -13.90602 -13.22163 -13.09059 -12.97600 -12.49022 -12.31991 -12.24668 -12.20796 -12.10875 -12.02789 -11.75125 -11.69208 -11.08757 -11.00808 -10.65657 -10.16156 -9.95728 -9.93612 -9.71891 -9.54331 -9.32214 -8.63204 -8.56520 -6.12613 -4.12309 -0.31296 0.04279 0.46977 1.39777 2.00250 2.43244 3.22546 3.29922 3.31342 3.55236 3.59621 3.88630 3.94722 4.06977 4.17414 4.30891 4.34207 4.35847 4.45839 4.65843 4.79592 4.86809 5.00744 5.14548 5.20721 5.23537 5.27445 5.39274 5.59724 5.62490 5.63809 5.79768 6.04882 6.13643 6.15876 6.26105 6.58719 7.05430 7.19677 7.52398 7.65857 8.42874 8.91652 9.48136 11.00686 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003470 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.193994 B = 8068.270515 C = 9202.107084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.095 4.095 11 C -0.638 4.638 12 S 2.582 3.418 13 O -0.927 6.927 14 O -0.952 6.952 15 O -0.668 6.668 16 C 0.070 3.930 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.018 4.018 20 C -0.153 4.153 21 C 0.084 3.916 22 N -0.486 5.486 23 C 0.159 3.841 24 C -0.105 4.105 25 C -0.049 4.049 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.005 -5.358 7.813 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.134 4.134 11 C -0.767 4.767 12 S 2.680 3.320 13 O -0.925 6.925 14 O -0.950 6.950 15 O -0.627 6.627 16 C 0.028 3.972 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.024 4.024 20 C -0.172 4.172 21 C -0.059 4.059 22 N -0.194 5.194 23 C -0.012 4.012 24 C -0.107 4.107 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 24.269 -6.517 8.328 26.473 hybrid contribution -0.185 2.296 -0.910 2.477 sum 24.084 -4.221 7.418 25.552 Atomic orbital electron populations 1.69907 1.06286 1.27029 1.50552 1.25025 0.94760 0.99168 0.94430 0.86776 0.80277 0.83646 0.78553 1.20185 1.21228 1.19109 1.21117 0.89171 0.94820 1.51498 0.90681 1.19535 0.97431 0.90557 0.96757 1.21311 0.85860 1.03199 1.03042 1.30882 1.10683 1.23605 1.11545 1.05854 0.72934 0.78438 0.74726 1.93629 1.80865 1.73109 1.44912 1.93629 1.82086 1.73628 1.45700 1.85786 1.48611 1.87677 1.40631 1.17699 1.04239 0.93245 0.81980 1.21214 0.99696 0.94024 0.98641 1.20891 0.97680 0.99927 0.91915 1.18307 0.96492 0.92689 0.94916 1.21954 1.00232 1.01633 0.93426 1.22305 0.96345 0.87658 0.99592 1.67494 1.13061 1.19088 1.19743 1.23308 0.90778 0.99737 0.87388 1.18818 1.02037 0.94185 0.95671 1.21156 0.94204 1.00555 0.91209 0.92573 0.96165 0.96532 0.90740 0.90750 0.85227 0.84641 0.83375 0.83318 0.83845 0.82578 0.81273 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.11 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 10 C -0.10 -1.79 5.16 -26.73 -0.14 -1.93 16 11 C -0.64 -8.94 5.43 37.16 0.20 -8.74 16 12 S 2.58 37.58 5.17 -107.50 -0.56 37.02 16 13 O -0.93 -16.40 18.09 -67.04 -1.21 -17.62 16 14 O -0.95 -15.40 16.24 -67.03 -1.09 -16.48 16 15 O -0.67 -8.38 10.02 -51.72 -0.52 -8.90 16 16 C 0.07 0.80 4.78 -39.55 -0.19 0.61 16 17 C -0.12 -1.07 8.33 -39.75 -0.33 -1.40 16 18 C -0.09 -0.69 9.80 -39.58 -0.39 -1.08 16 19 C -0.02 -0.17 5.75 -106.79 -0.61 -0.78 16 20 C -0.15 -1.11 9.88 -39.40 -0.39 -1.50 16 21 C 0.08 0.66 11.07 -17.96 -0.20 0.46 16 22 N -0.49 -4.71 10.30 -13.14 -0.14 -4.84 16 23 C 0.16 1.42 11.05 -16.97 -0.19 1.23 16 24 C -0.10 -1.03 5.74 -106.87 -0.61 -1.65 16 25 C -0.05 -0.51 8.73 -39.38 -0.34 -0.86 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 28 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.13 1.53 6.58 -51.92 -0.34 1.19 16 32 H 0.14 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.15 1.05 7.46 -52.49 -0.39 0.66 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.16 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -36.24 336.69 -10.53 -46.77 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.47 Total: -1.64 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -3.73 Total: -29.10 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.64 Total: -31.45 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.82 Total: -43.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -0.56 Total: 37.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.24 -10.53 -46.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777955644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.950 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds