Wall clock time and date at job start Fri Apr 10 2020 15:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46628 * 269.99374 * 3 2 1 5 5 H 1.48499 * 109.47219 * 29.99219 * 3 2 1 6 6 H 1.48495 * 109.47059 * 149.99544 * 3 2 1 7 7 C 1.37874 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00437 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47143 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47172 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54020 * 68.38164 * 12 11 10 14 14 O 1.42098 * 110.54662 * 291.62731 * 12 11 10 15 15 O 1.52204 * 104.44924 * 179.97438 * 12 11 10 16 16 C 1.35889 * 113.99481 * 75.00235 * 15 12 11 17 17 C 1.39847 * 119.52050 * 269.97943 * 16 15 12 18 18 C 1.36108 * 120.96307 * 179.97438 * 17 16 15 19 19 C 1.40281 * 119.55405 * 0.03794 * 18 17 16 20 20 C 1.40685 * 122.15004 * 180.02562 * 19 18 17 21 21 C 1.36183 * 118.68106 * 179.97438 * 20 19 18 22 22 N 1.32601 * 121.88108 * 359.97438 * 21 20 19 23 23 C 1.31231 * 122.77646 * 0.02562 * 22 21 20 24 24 C 1.40476 * 119.87946 * 359.97438 * 23 22 21 25 25 C 1.36649 * 119.51752 * 90.00228 * 16 15 12 26 26 H 0.96993 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47267 * 60.00575 * 9 7 2 28 28 H 1.08997 * 109.47201 * 299.99510 * 9 7 2 29 29 H 1.08999 * 109.47247 * 60.00027 * 10 9 7 30 30 H 1.09003 * 109.47195 * 299.99774 * 10 9 7 31 31 H 1.08999 * 109.46771 * 60.00049 * 11 10 9 32 32 H 1.09003 * 109.47147 * 300.00117 * 11 10 9 33 33 H 1.08001 * 119.51547 * 0.02562 * 17 16 15 34 34 H 1.07996 * 120.22298 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.65823 * 359.69561 * 20 19 18 36 36 H 1.08004 * 119.05580 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.06399 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.26175 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 16 6.1562 -4.3468 0.0016 13 8 5.8601 -4.9807 -1.2353 14 8 5.8601 -4.9800 1.2387 15 8 7.6724 -4.2136 0.0008 16 6 8.1953 -3.8446 1.1995 17 6 8.3578 -2.4867 1.4918 18 6 8.8780 -2.0842 2.6834 19 6 9.2577 -3.0449 3.6325 20 6 9.8004 -2.6902 4.8810 21 6 10.1442 -3.6811 5.7496 22 7 9.9810 -4.9625 5.4502 23 6 9.4815 -5.3668 4.3060 24 6 9.0944 -4.4240 3.3393 25 6 8.5551 -4.8058 2.1017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6805 -0.8888 29 1 3.6585 -3.1501 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9149 -2.1228 0.8910 32 1 5.9149 -2.1226 -0.8890 33 1 8.0655 -1.7466 0.7615 34 1 8.9979 -1.0323 2.8967 35 1 9.9456 -1.6527 5.1436 36 1 10.5618 -3.4156 6.7096 37 1 9.3675 -6.4224 4.1083 38 1 8.4245 -5.8513 1.8642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777955644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:54 Heat of formation + Delta-G solvation = -81.775398 kcal Electronic energy + Delta-G solvation = -24105.009665 eV Core-core repulsion = 20425.174528 eV Total energy + Delta-G solvation = -3679.835137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51809 -41.13789 -38.43502 -37.77505 -37.31449 -36.55575 -34.29291 -34.01281 -32.15786 -30.50711 -30.22567 -25.76969 -25.57701 -24.87082 -23.54944 -22.55975 -21.76669 -19.90794 -19.11882 -18.86001 -18.80693 -18.43821 -17.48886 -17.25657 -16.46816 -16.25975 -16.08888 -15.82530 -15.48530 -15.33989 -14.89247 -14.76149 -14.56398 -14.14243 -14.06588 -13.99452 -13.72236 -13.41785 -13.35448 -13.29179 -12.97921 -12.84967 -12.72104 -12.59005 -12.38759 -11.85038 -11.65189 -11.41822 -11.35972 -11.21778 -10.76994 -10.57653 -10.26330 -9.19933 -8.29188 -6.35562 -1.21787 -0.69232 -0.31728 0.75409 1.00802 1.37921 1.40664 1.52065 1.77756 2.37304 2.47632 2.82291 2.94662 3.06199 3.37159 3.44148 3.51588 3.57912 3.65231 3.72993 3.78225 3.87798 4.07579 4.28348 4.34005 4.55531 4.57248 4.65288 4.69409 4.75315 4.79169 4.92091 4.94999 4.98759 5.18751 5.32355 5.45604 5.52469 5.62656 5.65158 6.25415 6.73055 6.91921 7.29205 8.87881 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003470 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.193994 B = 8068.270515 C = 9202.107084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.233 1.233 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.101 4.101 11 C -0.629 4.629 12 S 2.599 3.401 13 O -0.967 6.967 14 O -0.975 6.975 15 O -0.661 6.661 16 C 0.040 3.960 17 C -0.128 4.128 18 C -0.076 4.076 19 C -0.034 4.034 20 C -0.145 4.145 21 C 0.072 3.928 22 N -0.508 5.508 23 C 0.148 3.852 24 C -0.121 4.121 25 C -0.061 4.061 26 H 0.267 0.733 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.186 0.814 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.061 -2.620 8.796 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.156 1.156 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.043 4.043 10 C -0.140 4.140 11 C -0.758 4.758 12 S 2.699 3.301 13 O -0.965 6.965 14 O -0.974 6.974 15 O -0.620 6.620 16 C -0.001 4.001 17 C -0.149 4.149 18 C -0.093 4.093 19 C -0.040 4.040 20 C -0.164 4.164 21 C -0.071 4.071 22 N -0.216 5.216 23 C -0.023 4.023 24 C -0.123 4.123 25 C -0.084 4.084 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.203 0.797 35 H 0.195 0.805 36 H 0.199 0.801 37 H 0.203 0.797 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 27.337 -3.819 9.303 29.128 hybrid contribution -1.101 1.361 -1.094 2.065 sum 26.236 -2.458 8.208 27.600 Atomic orbital electron populations 1.70090 1.08632 1.28331 1.52373 1.26142 0.95696 1.04013 0.93869 0.85585 0.79862 0.77408 0.79362 1.19081 1.21304 1.15590 1.21557 0.92416 0.93263 1.51027 0.95287 1.19512 0.93612 0.93194 0.97997 1.21173 0.89497 1.00869 1.02477 1.30753 1.06776 1.23622 1.14644 1.05235 0.73073 0.78412 0.73368 1.93575 1.82068 1.74428 1.46459 1.93588 1.82836 1.74543 1.46416 1.85753 1.46990 1.87853 1.41393 1.18139 1.05582 0.94697 0.81722 1.21524 1.00231 0.93302 0.99810 1.21325 0.95809 1.01401 0.90793 1.18702 0.96591 0.92591 0.96076 1.22318 0.98672 1.03204 0.92245 1.22824 0.96153 0.87251 1.00857 1.67528 1.13583 1.20445 1.20041 1.23610 0.90773 1.00646 0.87266 1.18975 1.02590 0.95239 0.95524 1.21354 0.94362 1.01006 0.91652 0.92460 0.94545 0.94851 0.91690 0.91531 0.82264 0.81587 0.80926 0.79724 0.80453 0.80105 0.79733 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.96 41.89 27.47 68.60 1.88 43.77 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.23 -8.91 6.54 99.48 0.65 -8.26 16 7 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.10 -3.71 5.16 30.59 0.16 -3.56 16 11 C -0.63 -15.86 5.43 71.98 0.39 -15.47 16 12 S 2.60 73.87 5.17 -56.49 -0.29 73.58 16 13 O -0.97 -34.51 18.09 -118.57 -2.15 -36.66 16 14 O -0.98 -31.60 16.24 -118.57 -1.93 -33.53 16 15 O -0.66 -15.82 10.02 -61.40 -0.61 -16.43 16 16 C 0.04 0.85 4.78 22.29 0.11 0.95 16 17 C -0.13 -1.95 8.33 22.16 0.18 -1.77 16 18 C -0.08 -0.92 9.80 22.27 0.22 -0.70 16 19 C -0.03 -0.52 5.75 -21.27 -0.12 -0.64 16 20 C -0.15 -1.62 9.88 22.39 0.22 -1.40 16 21 C 0.07 0.96 11.07 84.10 0.93 1.89 16 22 N -0.51 -9.22 10.30 -195.49 -2.01 -11.24 16 23 C 0.15 2.55 11.05 85.33 0.94 3.50 16 24 C -0.12 -2.26 5.74 -21.32 -0.12 -2.38 16 25 C -0.06 -1.25 8.73 22.40 0.20 -1.06 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.04 1.47 7.20 -2.39 -0.02 1.45 16 28 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.16 3.09 6.58 -2.39 -0.02 3.07 16 32 H 0.17 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.17 1.63 7.46 -2.91 -0.02 1.61 16 34 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -81.68 336.69 0.15 -81.53 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.02 Total: 9.28 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 3.93 Total: -50.97 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.71 Total: -70.57 kcal Atomic # 8 Polarization: -81.93 SS G_CDS: -4.69 Total: -86.62 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: 73.87 SS G_CDS: -0.29 Total: 73.58 kcal Total: -81.68 0.15 -81.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777955644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.245 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds