Wall clock time and date at job start Fri Apr 10 2020 15:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47389 * 239.99958 * 3 2 1 5 5 H 1.48500 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46987 * 120.00527 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99794 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99897 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00174 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99925 * 179.97438 * 11 10 9 14 14 O 1.42891 * 109.47003 * 180.02562 * 13 11 10 15 15 C 1.35959 * 116.99957 * 180.02562 * 14 13 11 16 16 C 1.38663 * 120.06213 * 359.97438 * 15 14 13 17 17 C 1.38177 * 119.96783 * 180.23586 * 16 15 14 18 18 C 1.38261 * 120.09806 * 359.48463 * 17 16 15 19 19 C 1.50695 * 119.94183 * 180.25382 * 18 17 16 20 20 F 1.39896 * 109.47776 * 270.25830 * 19 18 17 21 21 F 1.39907 * 109.46915 * 30.25859 * 19 18 17 22 22 F 1.39901 * 109.47442 * 150.25312 * 19 18 17 23 23 C 1.38262 * 120.12281 * 0.51444 * 18 17 16 24 24 C 1.38334 * 120.03067 * 359.74437 * 23 18 17 25 25 F 1.35102 * 120.04706 * 179.97438 * 24 23 18 26 26 H 0.96996 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47647 * 59.99885 * 9 7 2 28 28 H 1.09007 * 109.46889 * 299.99801 * 9 7 2 29 29 H 0.96997 * 120.00105 * 0.02562 * 10 9 7 30 30 H 1.08998 * 109.46950 * 59.99929 * 13 11 10 31 31 H 1.08999 * 109.47272 * 300.00411 * 13 11 10 32 32 H 1.08002 * 120.01219 * 359.95093 * 16 15 14 33 33 H 1.08004 * 119.95078 * 179.74786 * 17 16 15 34 34 H 1.07998 * 119.98539 * 179.76148 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0288 -0.0006 14 8 2.0187 -7.2663 -0.0005 15 6 2.7592 -8.4065 -0.0004 16 6 4.1440 -8.3354 -0.0010 17 6 4.8947 -9.4955 -0.0059 18 6 4.2671 -10.7275 0.0006 19 6 5.0893 -11.9904 0.0010 20 9 5.3432 -12.3822 -1.3177 21 9 6.3013 -11.7575 0.6599 22 9 4.3868 -13.0040 0.6616 23 6 2.8866 -10.8029 0.0012 24 6 2.1299 -9.6449 0.0007 25 9 0.7809 -9.7182 0.0008 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 3.1568 -3.4353 -0.0002 30 1 3.3605 -5.9709 0.8889 31 1 3.3592 -5.9711 -0.8910 32 1 4.6356 -7.3738 -0.0023 33 1 5.9733 -9.4398 -0.0105 34 1 2.3987 -11.7664 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829536626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:58:39 Heat of formation + Delta-G solvation = -244.527788 kcal Electronic energy + Delta-G solvation = -25613.744343 eV Core-core repulsion = 20818.781816 eV Total energy + Delta-G solvation = -4794.962527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.077 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.53026 -49.07097 -48.04841 -47.98487 -40.65111 -39.01820 -37.72643 -34.35968 -32.49812 -31.71401 -31.35742 -29.23796 -26.96008 -25.88839 -23.70688 -22.71602 -22.22304 -20.06764 -19.26549 -18.86635 -18.85529 -18.41880 -17.60427 -16.75326 -16.73156 -16.51451 -15.65578 -15.63720 -15.52768 -15.04340 -14.87597 -14.77326 -14.55824 -14.40773 -14.17489 -14.15957 -14.14258 -14.00955 -13.41763 -13.26537 -12.85370 -12.78773 -12.17937 -12.05383 -12.02771 -11.72045 -11.40703 -11.08562 -10.93675 -10.40323 -9.58064 -9.52312 -9.30231 -8.84850 -8.81370 -8.08117 -6.24839 -4.33094 0.37623 0.53462 2.21385 2.43514 2.79378 3.04168 3.19726 3.24931 3.26268 3.27656 3.54009 3.75198 3.96751 4.02792 4.21310 4.30394 4.37843 4.48460 4.75856 4.87923 4.94342 5.10290 5.11444 5.20729 5.39497 5.46861 5.54724 5.96362 6.76799 7.15459 7.21759 7.38673 7.53052 7.85747 8.39640 8.63125 8.86694 9.33461 10.85175 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.029619 B = 0.002149 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.125991 B =13028.155951 C =13788.186344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.034 3.966 14 O -0.270 6.270 15 C 0.138 3.862 16 C -0.189 4.189 17 C -0.035 4.035 18 C -0.204 4.204 19 C 0.516 3.484 20 F -0.175 7.175 21 F -0.176 7.176 22 F -0.176 7.176 23 C -0.068 4.068 24 C 0.073 3.927 25 F -0.119 7.119 26 H 0.268 0.732 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.392 0.608 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.701 -22.597 -0.011 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.405 6.405 13 C -0.044 4.044 14 O -0.181 6.181 15 C 0.090 3.910 16 C -0.208 4.208 17 C -0.054 4.054 18 C -0.206 4.206 19 C 0.462 3.538 20 F -0.157 7.157 21 F -0.157 7.157 22 F -0.158 7.158 23 C -0.087 4.087 24 C 0.053 3.947 25 F -0.097 7.097 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.225 0.775 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.380 -22.592 -0.012 25.761 hybrid contribution 1.025 0.873 0.001 1.346 sum 13.404 -21.718 -0.011 25.522 Atomic orbital electron populations 1.69958 1.06140 1.27621 1.48340 1.24957 0.94940 0.99519 0.94551 0.86442 0.79401 0.82168 0.78709 1.20018 1.21010 1.20023 1.21142 0.93242 0.90259 1.53928 0.91821 1.19192 0.88139 0.81452 0.98108 1.46357 1.11494 1.05259 1.72437 1.19764 0.89060 0.83891 0.79119 1.90746 1.16268 1.84383 1.49135 1.22850 0.95448 0.82264 1.03875 1.86319 1.33643 1.11501 1.86625 1.19358 0.90794 0.86501 0.94373 1.21211 0.91377 1.00471 1.07694 1.20777 1.00998 0.89951 0.93633 1.19573 0.93622 0.92896 1.14536 1.18065 0.77992 0.83860 0.73871 1.93241 1.94418 1.92032 1.35986 1.93201 1.46846 1.94488 1.81165 1.93202 1.78600 1.62871 1.81089 1.20684 0.92259 0.98332 0.97384 1.16682 0.78097 0.90816 1.09141 1.91588 1.27297 1.96808 1.94014 0.92236 0.95203 0.95218 0.77475 0.88667 0.88672 0.82907 0.83584 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.55 -14.17 9.28 -34.44 -0.32 -14.49 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.35 5.43 -5.20 -0.03 6.32 16 10 N -0.71 -13.56 5.55 -61.47 -0.34 -13.90 16 11 C 0.50 9.33 7.91 -10.98 -0.09 9.25 16 12 O -0.53 -12.71 16.50 -14.35 -0.24 -12.94 16 13 C 0.03 0.42 5.22 36.01 0.19 0.61 16 14 O -0.27 -3.97 9.53 -39.52 -0.38 -4.35 16 15 C 0.14 1.59 6.69 -39.18 -0.26 1.33 16 16 C -0.19 -1.53 9.04 -39.45 -0.36 -1.88 16 17 C -0.04 -0.25 9.39 -39.60 -0.37 -0.63 16 18 C -0.20 -1.68 5.45 -104.61 -0.57 -2.25 16 19 C 0.52 4.17 3.36 36.00 0.12 4.29 16 20 F -0.18 -1.52 17.30 2.25 0.04 -1.48 16 21 F -0.18 -1.42 16.46 2.25 0.04 -1.38 16 22 F -0.18 -1.50 16.46 2.25 0.04 -1.46 16 23 C -0.07 -0.61 9.37 -39.54 -0.37 -0.98 16 24 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 25 F -0.12 -1.64 17.11 2.25 0.04 -1.60 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.39 6.05 8.32 -40.82 -0.34 5.71 16 30 H 0.10 0.86 7.66 -51.93 -0.40 0.46 16 31 H 0.10 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.15 0.85 6.30 -52.49 -0.33 0.52 16 33 H 0.15 0.71 7.60 -52.48 -0.40 0.31 16 34 H 0.16 1.10 7.60 -52.49 -0.40 0.71 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -32.77 324.31 -5.28 -38.06 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.64 Total: -0.06 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.44 Total: 3.75 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.40 Total: -38.54 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.61 Total: -17.29 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.15 Total: -5.92 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.77 -5.28 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829536626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.469 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds