Wall clock time and date at job start Fri Apr 10 2020 15:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47389 * 239.99958 * 3 2 1 5 5 H 1.48500 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46987 * 120.00527 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99794 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99897 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00174 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99925 * 179.97438 * 11 10 9 14 14 O 1.42891 * 109.47003 * 180.02562 * 13 11 10 15 15 C 1.35959 * 116.99957 * 180.02562 * 14 13 11 16 16 C 1.38663 * 120.06213 * 359.97438 * 15 14 13 17 17 C 1.38177 * 119.96783 * 180.23586 * 16 15 14 18 18 C 1.38261 * 120.09806 * 359.48463 * 17 16 15 19 19 C 1.50695 * 119.94183 * 180.25382 * 18 17 16 20 20 F 1.39896 * 109.47776 * 270.25830 * 19 18 17 21 21 F 1.39907 * 109.46915 * 30.25859 * 19 18 17 22 22 F 1.39901 * 109.47442 * 150.25312 * 19 18 17 23 23 C 1.38262 * 120.12281 * 0.51444 * 18 17 16 24 24 C 1.38334 * 120.03067 * 359.74437 * 23 18 17 25 25 F 1.35102 * 120.04706 * 179.97438 * 24 23 18 26 26 H 0.96996 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47647 * 59.99885 * 9 7 2 28 28 H 1.09007 * 109.46889 * 299.99801 * 9 7 2 29 29 H 0.96997 * 120.00105 * 0.02562 * 10 9 7 30 30 H 1.08998 * 109.46950 * 59.99929 * 13 11 10 31 31 H 1.08999 * 109.47272 * 300.00411 * 13 11 10 32 32 H 1.08002 * 120.01219 * 359.95093 * 16 15 14 33 33 H 1.08004 * 119.95078 * 179.74786 * 17 16 15 34 34 H 1.07998 * 119.98539 * 179.76148 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0288 -0.0006 14 8 2.0187 -7.2663 -0.0005 15 6 2.7592 -8.4065 -0.0004 16 6 4.1440 -8.3354 -0.0010 17 6 4.8947 -9.4955 -0.0059 18 6 4.2671 -10.7275 0.0006 19 6 5.0893 -11.9904 0.0010 20 9 5.3432 -12.3822 -1.3177 21 9 6.3013 -11.7575 0.6599 22 9 4.3868 -13.0040 0.6616 23 6 2.8866 -10.8029 0.0012 24 6 2.1299 -9.6449 0.0007 25 9 0.7809 -9.7182 0.0008 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 3.1568 -3.4353 -0.0002 30 1 3.3605 -5.9709 0.8889 31 1 3.3592 -5.9711 -0.8910 32 1 4.6356 -7.3738 -0.0023 33 1 5.9733 -9.4398 -0.0105 34 1 2.3987 -11.7664 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829536626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:58:38 Heat of formation + Delta-G solvation = -266.384268 kcal Electronic energy + Delta-G solvation = -25614.692111 eV Core-core repulsion = 20818.781816 eV Total energy + Delta-G solvation = -4795.910295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.17228 -49.99264 -48.68712 -48.63316 -41.56557 -40.35641 -38.71588 -36.20479 -34.42075 -32.47124 -32.07002 -30.58532 -28.55143 -26.67951 -24.89094 -24.05703 -23.09302 -21.61726 -20.03706 -19.58991 -19.49724 -19.25288 -19.04077 -17.90001 -17.69575 -17.40898 -17.15366 -17.00760 -16.67515 -16.28164 -15.79259 -15.63336 -15.51055 -15.42309 -15.10329 -14.99310 -14.78677 -14.77638 -14.60126 -14.11408 -14.08212 -14.04709 -13.85820 -13.47145 -12.96630 -12.88015 -12.67789 -12.42352 -12.34609 -12.23017 -11.52285 -10.90725 -10.80175 -10.23976 -9.93436 -9.62036 -8.28964 -6.46040 -0.32803 -0.13692 1.39079 1.46611 1.48840 1.57248 1.57761 1.60521 2.11379 2.36337 2.58294 2.71619 2.88010 3.06485 3.15614 3.39122 3.50366 3.68492 3.82983 3.86299 4.01347 4.08858 4.24030 4.43856 4.77158 4.83851 4.90646 5.08100 5.21216 5.26448 5.42436 5.63084 5.82339 5.98875 6.63741 6.79789 7.22227 7.39626 8.83010 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.029619 B = 0.002149 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.125991 B =13028.155951 C =13788.186344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.555 4.555 8 H 0.090 0.910 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.493 3.507 12 O -0.593 6.593 13 C 0.047 3.953 14 O -0.312 6.312 15 C 0.119 3.881 16 C -0.174 4.174 17 C -0.024 4.024 18 C -0.204 4.204 19 C 0.522 3.478 20 F -0.178 7.178 21 F -0.172 7.172 22 F -0.180 7.180 23 C -0.063 4.063 24 C 0.040 3.960 25 F -0.143 7.143 26 H 0.268 0.732 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.416 0.584 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.996 -22.664 0.003 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.592 4.592 8 H 0.108 0.892 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.279 3.721 12 O -0.474 6.474 13 C -0.030 4.030 14 O -0.224 6.224 15 C 0.072 3.928 16 C -0.193 4.193 17 C -0.042 4.042 18 C -0.206 4.206 19 C 0.467 3.533 20 F -0.160 7.160 21 F -0.154 7.154 22 F -0.161 7.161 23 C -0.081 4.081 24 C 0.020 3.980 25 F -0.122 7.122 26 H 0.077 0.923 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.253 0.747 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.205 0.795 33 H 0.196 0.804 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.753 -22.696 0.002 28.210 hybrid contribution -0.286 0.751 -0.002 0.803 sum 16.467 -21.946 0.000 27.437 Atomic orbital electron populations 1.70137 1.08392 1.28668 1.49903 1.26093 0.95739 1.04037 0.93893 0.85191 0.77849 0.76476 0.79605 1.18485 1.21525 1.18494 1.21586 0.94529 0.90191 1.52940 0.89155 1.18598 0.88698 0.84101 0.94323 1.45975 1.11717 1.04539 1.72489 1.20929 0.89440 0.85019 0.76683 1.90718 1.19682 1.85401 1.51616 1.22832 0.93042 0.79109 1.08019 1.86240 1.35723 1.12758 1.87725 1.19574 0.92098 0.85155 0.96020 1.21552 0.89598 1.02309 1.05800 1.21177 1.02526 0.88978 0.91527 1.19712 0.93203 0.93644 1.14032 1.17979 0.77969 0.83625 0.73690 1.93240 1.94432 1.92056 1.36233 1.93209 1.46633 1.94444 1.81086 1.93200 1.78716 1.63070 1.81154 1.20781 0.92697 0.98046 0.96623 1.17097 0.77392 0.92095 1.11373 1.91517 1.29187 1.96989 1.94497 0.92282 0.99343 0.99359 0.74745 0.84257 0.84264 0.79508 0.80378 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.99 40.69 29.54 68.60 2.03 42.72 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.55 -28.63 9.28 25.60 0.24 -28.39 16 8 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 13.96 5.43 85.63 0.46 14.42 16 10 N -0.70 -26.47 5.55 -466.78 -2.59 -29.06 16 11 C 0.49 18.43 7.91 87.66 0.69 19.12 16 12 O -0.59 -30.02 16.50 16.02 0.26 -29.76 16 13 C 0.05 1.03 5.22 71.24 0.37 1.40 16 14 O -0.31 -8.93 9.53 -74.05 -0.71 -9.64 16 15 C 0.12 2.54 6.69 22.53 0.15 2.70 16 16 C -0.17 -2.10 9.04 22.36 0.20 -1.90 16 17 C -0.02 -0.25 9.39 22.26 0.21 -0.04 16 18 C -0.20 -2.81 5.45 -19.85 -0.11 -2.92 16 19 C 0.52 7.10 3.36 71.23 0.24 7.34 16 20 F -0.18 -2.68 17.30 44.97 0.78 -1.90 16 21 F -0.17 -2.24 16.46 44.97 0.74 -1.50 16 22 F -0.18 -2.74 16.46 44.97 0.74 -2.00 16 23 C -0.06 -1.06 9.37 22.30 0.21 -0.85 16 24 C 0.04 0.92 7.31 22.45 0.16 1.09 16 25 F -0.14 -4.19 17.11 44.97 0.77 -3.42 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.42 11.76 8.32 -92.71 -0.77 10.99 16 30 H 0.14 1.84 7.66 -2.39 -0.02 1.82 16 31 H 0.14 1.84 7.66 -2.39 -0.02 1.82 16 32 H 0.19 0.89 6.30 -2.91 -0.02 0.87 16 33 H 0.18 0.72 7.60 -2.91 -0.02 0.70 16 34 H 0.17 2.27 7.60 -2.91 -0.02 2.24 16 Total: -1.00 -77.92 324.31 6.02 -71.90 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.42 Total: 5.12 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 3.30 Total: 12.55 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.30 Total: -84.07 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.44 Total: -39.39 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 3.03 Total: -8.82 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -77.92 6.02 -71.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829536626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.489 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds