Wall clock time and date at job start Fri Apr 10 2020 15:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50699 * 109.46904 * 108.85014 * 3 2 1 5 5 C 1.38268 * 119.94505 * 269.72338 * 4 3 2 6 6 C 1.38147 * 120.05554 * 179.72750 * 5 4 3 7 7 C 1.38732 * 119.94396 * 0.56783 * 6 5 4 8 8 O 1.35893 * 120.05776 * 179.68214 * 7 6 5 9 9 S 1.52199 * 114.00065 * 270.02703 * 8 7 6 10 10 O 1.42102 * 104.27940 * 191.06943 * 9 8 7 11 11 O 1.42107 * 104.27880 * 318.92492 * 9 8 7 12 12 C 1.81394 * 104.45494 * 74.99786 * 9 8 7 13 13 C 1.52998 * 109.47750 * 174.64453 * 12 9 8 14 14 C 1.50697 * 115.54685 * 65.27932 * 13 12 9 15 15 H 1.08004 * 120.00079 * 264.76554 * 14 13 12 16 16 C 1.37878 * 120.00110 * 84.76849 * 14 13 12 17 17 N 1.31514 * 119.99601 * 351.97036 * 16 14 13 18 18 Si 1.86799 * 120.00278 * 171.97262 * 16 14 13 19 19 H 1.48501 * 109.47202 * 89.99772 * 18 16 14 20 20 H 1.48498 * 109.47367 * 209.99784 * 18 16 14 21 21 H 1.48499 * 109.46996 * 330.00064 * 18 16 14 22 22 C 1.52995 * 117.49600 * 279.61486 * 13 12 9 23 23 C 1.52994 * 117.50026 * 210.95437 * 13 12 9 24 24 C 1.38739 * 119.88812 * 359.70797 * 7 6 5 25 25 C 1.38143 * 119.94128 * 359.97438 * 24 7 6 26 26 H 1.09000 * 109.46996 * 228.84928 * 3 2 1 27 27 H 1.08993 * 109.47078 * 348.85116 * 3 2 1 28 28 H 1.08002 * 119.97177 * 359.97438 * 5 4 3 29 29 H 1.07997 * 120.03021 * 180.24965 * 6 5 4 30 30 H 1.09007 * 109.46868 * 294.65035 * 12 9 8 31 31 H 1.09006 * 109.46709 * 54.64063 * 12 9 8 32 32 H 0.97006 * 120.00083 * 185.03270 * 17 16 14 33 33 H 1.09001 * 117.50530 * 359.97438 * 22 13 12 34 34 H 1.09004 * 117.49717 * 145.02192 * 22 13 12 35 35 H 1.09001 * 117.49791 * 214.98047 * 23 13 12 36 36 H 1.09003 * 117.50013 * 359.96887 * 23 13 12 37 37 H 1.07995 * 120.02729 * 179.97438 * 24 7 6 38 38 H 1.08007 * 119.97034 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1101 0.4599 -1.3446 5 6 3.3460 -0.4642 -2.3457 6 6 3.8009 -0.0451 -3.5810 7 6 4.0323 1.3030 -3.8129 8 8 4.4859 1.7171 -5.0251 9 16 6.0032 1.7558 -5.1380 10 8 6.2466 2.4504 -6.3536 11 8 6.4340 2.2864 -3.8921 12 6 6.4904 0.0152 -5.2911 13 6 7.9962 -0.0725 -5.5470 14 6 8.8757 0.4075 -4.4213 15 1 9.2494 1.4208 -4.4223 16 6 9.2034 -0.4470 -3.3901 17 7 8.6256 -1.6253 -3.3037 18 14 10.4680 0.0688 -2.1156 19 1 9.7856 0.7620 -0.9935 20 1 11.1706 -1.1337 -1.6005 21 1 11.4529 0.9884 -2.7397 22 6 8.4850 0.1673 -6.9768 23 6 8.5028 -1.2456 -6.3883 24 6 3.8002 2.2277 -2.8049 25 6 3.3391 1.8042 -1.5735 26 1 2.9710 0.6771 0.7738 27 1 2.9718 -1.0074 0.1987 28 1 3.1707 -1.5141 -2.1631 29 1 3.9812 -0.7668 -4.3639 30 1 6.2471 -0.5126 -4.3689 31 1 5.9533 -0.4405 -6.1231 32 1 8.8009 -2.1966 -2.5396 33 1 7.7337 0.3871 -7.7354 34 1 9.4429 0.6718 -7.1033 35 1 9.4723 -1.6701 -6.1279 36 1 7.7632 -1.9554 -6.7592 37 1 3.9800 3.2776 -2.9828 38 1 3.1579 2.5236 -0.7886 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829736419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:55 Heat of formation + Delta-G solvation = -49.337509 kcal Electronic energy + Delta-G solvation = -24905.234435 eV Core-core repulsion = 21226.805910 eV Total energy + Delta-G solvation = -3678.428525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04976 -39.56047 -38.56836 -38.13147 -37.45028 -37.00276 -34.03716 -33.46524 -32.20081 -29.97525 -28.53535 -27.47438 -24.06782 -23.92221 -22.98655 -21.77820 -21.06234 -19.36440 -18.80731 -18.63097 -18.43877 -17.69188 -16.90962 -16.64926 -16.56219 -16.21110 -15.65598 -15.24575 -15.14993 -14.91859 -14.48121 -14.29324 -14.20658 -14.04938 -13.75281 -13.69820 -13.64574 -13.20294 -13.09406 -12.98231 -12.91022 -12.80139 -12.45519 -12.43875 -12.41887 -12.23670 -11.92193 -11.89716 -11.53988 -10.84713 -10.51118 -10.06968 -10.01003 -9.75486 -8.13866 -6.28428 -0.88985 0.10195 0.29081 1.35323 1.44730 1.46744 1.55380 1.81815 1.88838 2.45062 2.48366 2.72773 3.07246 3.17052 3.29665 3.39045 3.70422 3.75880 3.76877 3.88818 4.09977 4.24897 4.28076 4.34374 4.49538 4.59435 4.68885 4.80723 4.83569 4.98085 4.98198 4.99132 5.18227 5.20885 5.25210 5.41581 5.44599 5.59786 5.76972 5.82538 6.25682 6.66185 6.76642 7.43719 8.93511 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.004862 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.780219 B = 5757.051853 C = 6822.461671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.241 3.759 3 C 0.023 3.977 4 C -0.077 4.077 5 C -0.086 4.086 6 C -0.138 4.138 7 C 0.040 3.960 8 O -0.678 6.678 9 S 2.599 3.401 10 O -0.976 6.976 11 O -0.970 6.970 12 C -0.569 4.569 13 C 0.016 3.984 14 C -0.537 4.537 15 H 0.048 0.952 16 C 0.051 3.949 17 N -0.886 5.886 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.089 4.089 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -0.788 6.239 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.076 4.076 3 C -0.016 4.016 4 C -0.080 4.080 5 C -0.104 4.104 6 C -0.158 4.158 7 C -0.001 4.001 8 O -0.638 6.638 9 S 2.700 3.300 10 O -0.975 6.975 11 O -0.968 6.968 12 C -0.701 4.701 13 C 0.014 3.986 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.153 4.153 17 N -0.522 5.522 18 Si 0.759 3.241 19 H -0.197 1.197 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.241 4.241 23 C -0.172 4.172 24 C -0.137 4.137 25 C -0.107 4.107 26 H 0.177 0.823 27 H 0.176 0.824 28 H 0.192 0.808 29 H 0.170 0.830 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.003 -0.172 6.174 13.499 hybrid contribution 1.444 -0.137 -0.077 1.452 sum -10.559 -0.309 6.097 12.197 Atomic orbital electron populations 1.81284 1.15044 1.11112 1.10248 1.29493 0.95317 0.91304 0.91465 1.18515 0.79247 1.08938 0.94940 1.19942 0.98803 0.93212 0.96015 1.21414 0.96446 1.02076 0.90463 1.21687 1.00505 0.93073 1.00569 1.18646 1.05735 0.94776 0.80946 1.85728 1.49570 1.86659 1.41794 1.05217 0.72141 0.79052 0.73572 1.93486 1.82892 1.72604 1.48477 1.93526 1.80005 1.78268 1.45046 1.30097 1.06662 1.21814 1.11477 1.18348 0.87683 1.02558 0.90039 1.20641 1.31757 0.97982 1.07049 0.93384 1.25427 0.96724 0.94502 0.98663 1.70001 1.42590 1.09733 1.29861 0.85928 0.80085 0.78122 0.79966 1.19730 1.19925 1.20029 1.23286 1.02878 1.00922 0.97045 1.22526 1.01580 0.90100 1.03036 1.21547 0.98549 1.00309 0.93331 1.21399 0.96717 0.96662 0.95887 0.82312 0.82376 0.80825 0.83008 0.84291 0.84701 0.92322 0.88690 0.89781 0.91193 0.89247 0.84558 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.43 18.54 20.01 0.37 -11.06 16 2 C 0.24 3.56 15.41 89.44 1.38 4.94 16 3 C 0.02 0.15 5.83 28.04 0.16 0.31 16 4 C -0.08 -1.19 5.09 -19.85 -0.10 -1.29 16 5 C -0.09 -1.57 9.69 22.26 0.22 -1.35 16 6 C -0.14 -3.51 8.54 22.37 0.19 -3.32 16 7 C 0.04 1.26 4.80 22.51 0.11 1.37 16 8 O -0.68 -24.36 10.05 -61.43 -0.62 -24.98 16 9 S 2.60 108.67 4.91 -56.49 -0.28 108.40 16 10 O -0.98 -45.34 18.09 -118.57 -2.15 -47.49 16 11 O -0.97 -44.97 15.89 -118.57 -1.88 -46.85 16 12 C -0.57 -22.81 5.15 71.98 0.37 -22.44 16 13 C 0.02 0.73 1.32 -52.93 -0.07 0.66 16 14 C -0.54 -28.47 8.15 25.60 0.21 -28.26 16 15 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 16 C 0.05 2.61 5.38 84.65 0.46 3.06 16 17 N -0.89 -45.20 12.99 21.45 0.28 -44.92 16 18 Si 0.93 41.41 29.55 68.60 2.03 43.43 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 C -0.20 -8.64 9.96 30.62 0.30 -8.33 16 23 C -0.13 -5.73 9.50 30.62 0.29 -5.44 16 24 C -0.12 -3.21 9.05 22.37 0.20 -3.01 16 25 C -0.09 -1.66 9.69 22.25 0.22 -1.44 16 26 H 0.16 0.11 8.08 -2.39 -0.02 0.09 16 27 H 0.16 0.17 8.08 -2.39 -0.02 0.15 16 28 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.15 3.40 7.60 -2.91 -0.02 3.38 16 30 H 0.14 5.56 6.98 -2.39 -0.02 5.55 16 31 H 0.13 4.40 8.09 -2.39 -0.02 4.38 16 32 H 0.27 12.84 8.32 -92.70 -0.77 12.07 16 33 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 35 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -75.08 350.63 2.77 -72.31 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.08 Total: 15.69 kcal Atomic # 6 Polarization: -68.48 SS G_CDS: 3.93 Total: -64.54 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.65 Total: -55.98 kcal Atomic # 8 Polarization: -114.67 SS G_CDS: -4.65 Total: -119.32 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 108.67 SS G_CDS: -0.28 Total: 108.40 kcal Total: -75.08 2.77 -72.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829736419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.977 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds