Wall clock time and date at job start Fri Apr 10 2020 15:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00291 * 2 1 4 4 H 1.48495 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47182 * 300.00417 * 3 2 1 6 6 H 1.48504 * 109.47132 * 60.00254 * 3 2 1 7 7 C 1.37875 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00315 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99450 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00478 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47512 * 179.97438 * 13 11 10 15 15 C 1.34786 * 126.25825 * 87.56001 * 14 13 11 16 16 O 1.21600 * 125.27027 * 359.72770 * 15 14 13 17 17 O 1.34229 * 109.45207 * 179.97438 * 15 14 13 18 18 C 1.35560 * 109.17765 * 0.02562 * 17 15 14 19 19 C 1.38612 * 132.99359 * 179.97438 * 18 17 15 20 20 C 1.38123 * 119.91635 * 180.02562 * 19 18 17 21 21 C 1.38417 * 120.30993 * 359.97438 * 20 19 18 22 22 C 1.38122 * 120.18451 * 359.95679 * 21 20 19 23 23 N 1.48025 * 120.08754 * 179.97438 * 22 21 20 24 24 O 1.21806 * 119.99387 * 45.31124 * 23 22 21 25 25 O 1.21798 * 120.00352 * 225.31362 * 23 22 21 26 26 C 1.38607 * 119.82849 * 0.08804 * 22 21 20 27 27 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.99736 * 9 7 2 29 29 H 1.09000 * 109.46574 * 299.99782 * 9 7 2 30 30 H 0.97005 * 119.99870 * 359.97438 * 10 9 7 31 31 H 1.08995 * 109.47403 * 59.99224 * 13 11 10 32 32 H 1.09000 * 109.46927 * 299.99335 * 13 11 10 33 33 H 1.07998 * 120.04173 * 0.07329 * 19 18 17 34 34 H 1.08000 * 119.84764 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.90570 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 1.7536 -4.8834 -0.0029 12 8 0.5611 -5.1049 -0.0039 13 6 2.7328 -6.0288 -0.0021 14 7 2.0003 -7.2975 -0.0033 15 6 1.5629 -7.9644 -1.0899 16 8 1.7103 -7.6035 -2.2417 17 8 0.9348 -9.0859 -0.7033 18 6 0.9549 -9.1636 0.6499 19 6 0.4610 -10.0942 1.5507 20 6 0.6370 -9.9009 2.9070 21 6 1.3054 -8.7816 3.3721 22 6 1.8023 -7.8497 2.4820 23 7 2.5163 -6.6532 2.9818 24 8 3.3579 -6.7668 3.8550 25 8 2.2623 -5.5552 2.5199 26 6 1.6286 -8.0365 1.1196 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5574 0.8880 30 1 3.1565 -3.4355 -0.0010 31 1 3.3582 -5.9716 0.8888 32 1 3.3607 -5.9707 -0.8911 33 1 -0.0602 -10.9696 1.1925 34 1 0.2521 -10.6269 3.6078 35 1 1.4398 -8.6372 4.4339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842570205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:40 Heat of formation + Delta-G solvation = -33.045052 kcal Electronic energy + Delta-G solvation = -27210.798590 eV Core-core repulsion = 22986.783345 eV Total energy + Delta-G solvation = -4224.015245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.94589 -42.25720 -39.33368 -38.96728 -37.73542 -36.77533 -36.13871 -34.18876 -32.38885 -32.23197 -30.78690 -29.21376 -27.07713 -26.46939 -24.28408 -23.39656 -22.98986 -21.91843 -20.20198 -19.65209 -19.33346 -18.75022 -18.21159 -17.79288 -17.38938 -17.02064 -16.71261 -15.81798 -15.65294 -15.57406 -14.94479 -14.79697 -14.55106 -14.10094 -13.94329 -13.46534 -13.34100 -12.91384 -12.76074 -12.66772 -11.97074 -11.74052 -11.61965 -11.55403 -11.43425 -11.26970 -10.98981 -10.92899 -10.87087 -10.29896 -9.90894 -9.38341 -9.33816 -8.73440 -8.72062 -7.90467 -6.13240 -4.19684 -0.42522 0.28510 0.67436 1.03437 1.43955 2.10197 2.17847 2.58305 3.17436 3.27122 3.33949 3.37264 3.50936 3.75646 3.96369 3.98404 4.22096 4.37463 4.38756 4.54320 4.81495 4.90069 5.02590 5.23398 5.25834 5.30956 5.36270 5.50722 5.62177 6.07522 6.56022 7.18543 7.31253 7.37316 7.40360 7.55240 7.67428 7.99101 8.56071 8.76510 9.01806 9.46152 10.97129 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.003701 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.312017 B = 7564.079858 C = 8443.934408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.253 3.747 10 N -0.697 5.697 11 C 0.502 3.498 12 O -0.545 6.545 13 C 0.100 3.900 14 N -0.521 5.521 15 C 0.648 3.352 16 O -0.458 6.458 17 O -0.224 6.224 18 C 0.045 3.955 19 C -0.033 4.033 20 C -0.107 4.107 21 C -0.041 4.041 22 C -0.021 4.021 23 N 0.014 4.986 24 O -0.139 6.139 25 O -0.130 6.130 26 C 0.137 3.863 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.392 0.608 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -23.626 7.372 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.132 3.868 10 N -0.345 5.345 11 C 0.284 3.716 12 O -0.424 6.424 13 C -0.024 4.024 14 N -0.250 5.250 15 C 0.402 3.598 16 O -0.338 6.338 17 O -0.130 6.130 18 C -0.003 4.003 19 C -0.052 4.052 20 C -0.127 4.127 21 C -0.061 4.061 22 C -0.106 4.106 23 N 0.538 4.462 24 O -0.358 6.358 25 O -0.348 6.348 26 C 0.034 3.966 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.225 0.775 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.519 -24.062 6.167 25.088 hybrid contribution 1.051 1.582 0.104 1.902 sum 4.570 -22.481 6.271 23.782 Atomic orbital electron populations 1.69992 1.06130 1.27154 1.49088 1.24945 0.94903 0.99452 0.94712 0.86349 0.79872 0.82931 0.77689 1.19568 1.20880 1.20793 1.21251 0.93366 0.90295 1.52984 0.91698 1.19149 0.88165 0.81559 0.97883 1.46259 1.11367 1.05379 1.71469 1.19983 0.89108 0.84362 0.78188 1.90681 1.16175 1.84488 1.51050 1.21969 0.94210 0.79494 1.06718 1.45569 1.53251 1.21962 1.04196 1.18325 0.77955 0.78164 0.85321 1.91215 1.59323 1.67450 1.15788 1.85095 1.67610 1.40796 1.19476 1.18767 1.03291 0.96537 0.81686 1.20436 0.96652 0.97423 0.90651 1.20932 0.99843 0.97631 0.94304 1.20879 0.93866 0.91024 1.00287 1.19917 1.09105 0.91575 0.90010 1.43552 1.00065 1.02334 1.00260 1.94551 1.25303 1.92715 1.23202 1.94736 1.68850 1.11793 1.59382 1.17916 0.97983 0.92995 0.87674 0.92543 0.95508 0.95155 0.77505 0.86549 0.85530 0.82120 0.81674 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.66 7.60 -52.48 -0.40 1.26 16 9 C 0.25 6.81 5.43 -5.20 -0.03 6.78 16 10 N -0.70 -14.96 5.55 -61.48 -0.34 -15.30 16 11 C 0.50 10.38 6.01 -10.99 -0.07 10.31 16 12 O -0.55 -13.58 16.43 5.55 0.09 -13.49 16 13 C 0.10 1.53 5.66 -5.20 -0.03 1.50 16 14 N -0.52 -8.01 2.29 -120.31 -0.28 -8.28 16 15 C 0.65 10.48 9.07 54.06 0.49 10.97 16 16 O -0.46 -8.64 17.84 -19.01 -0.34 -8.98 16 17 O -0.22 -2.99 10.72 -21.99 -0.24 -3.22 16 18 C 0.05 0.49 7.35 -38.99 -0.29 0.20 16 19 C -0.03 -0.19 10.06 -39.49 -0.40 -0.59 16 20 C -0.11 -0.48 10.03 -39.56 -0.40 -0.87 16 21 C -0.04 -0.30 9.76 -39.56 -0.39 -0.68 16 22 C -0.02 -0.24 6.39 -79.85 -0.51 -0.75 16 23 N 0.01 0.21 3.80 34.01 0.13 0.34 16 24 O -0.14 -1.89 19.08 -29.46 -0.56 -2.45 16 25 O -0.13 -2.28 14.07 -29.46 -0.41 -2.69 16 26 C 0.14 1.79 6.73 -83.79 -0.56 1.23 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 31 H 0.12 1.60 5.63 -51.93 -0.29 1.30 16 32 H 0.13 1.63 8.11 -51.93 -0.42 1.20 16 33 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.17 0.08 8.06 -52.49 -0.42 -0.35 16 35 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -37.05 323.58 -6.65 -43.70 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.70 Total: 0.48 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -2.59 Total: 14.64 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.25 Total: -48.95 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.46 Total: -30.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.05 -6.65 -43.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842570205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.651 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds