Wall clock time and date at job start Fri Apr 10 2020 15:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00291 * 2 1 4 4 H 1.48495 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47182 * 300.00417 * 3 2 1 6 6 H 1.48504 * 109.47132 * 60.00254 * 3 2 1 7 7 C 1.37875 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00315 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99450 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00478 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47512 * 179.97438 * 13 11 10 15 15 C 1.34786 * 126.25825 * 87.56001 * 14 13 11 16 16 O 1.21600 * 125.27027 * 359.72770 * 15 14 13 17 17 O 1.34229 * 109.45207 * 179.97438 * 15 14 13 18 18 C 1.35560 * 109.17765 * 0.02562 * 17 15 14 19 19 C 1.38612 * 132.99359 * 179.97438 * 18 17 15 20 20 C 1.38123 * 119.91635 * 180.02562 * 19 18 17 21 21 C 1.38417 * 120.30993 * 359.97438 * 20 19 18 22 22 C 1.38122 * 120.18451 * 359.95679 * 21 20 19 23 23 N 1.48025 * 120.08754 * 179.97438 * 22 21 20 24 24 O 1.21806 * 119.99387 * 45.31124 * 23 22 21 25 25 O 1.21798 * 120.00352 * 225.31362 * 23 22 21 26 26 C 1.38607 * 119.82849 * 0.08804 * 22 21 20 27 27 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.99736 * 9 7 2 29 29 H 1.09000 * 109.46574 * 299.99782 * 9 7 2 30 30 H 0.97005 * 119.99870 * 359.97438 * 10 9 7 31 31 H 1.08995 * 109.47403 * 59.99224 * 13 11 10 32 32 H 1.09000 * 109.46927 * 299.99335 * 13 11 10 33 33 H 1.07998 * 120.04173 * 0.07329 * 19 18 17 34 34 H 1.08000 * 119.84764 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.90570 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 1.7536 -4.8834 -0.0029 12 8 0.5611 -5.1049 -0.0039 13 6 2.7328 -6.0288 -0.0021 14 7 2.0003 -7.2975 -0.0033 15 6 1.5629 -7.9644 -1.0899 16 8 1.7103 -7.6035 -2.2417 17 8 0.9348 -9.0859 -0.7033 18 6 0.9549 -9.1636 0.6499 19 6 0.4610 -10.0942 1.5507 20 6 0.6370 -9.9009 2.9070 21 6 1.3054 -8.7816 3.3721 22 6 1.8023 -7.8497 2.4820 23 7 2.5163 -6.6532 2.9818 24 8 3.3579 -6.7668 3.8550 25 8 2.2623 -5.5552 2.5199 26 6 1.6286 -8.0365 1.1196 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5574 0.8880 30 1 3.1565 -3.4355 -0.0010 31 1 3.3582 -5.9716 0.8888 32 1 3.3607 -5.9707 -0.8911 33 1 -0.0602 -10.9696 1.1925 34 1 0.2521 -10.6269 3.6078 35 1 1.4398 -8.6372 4.4339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842570205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:39 Heat of formation + Delta-G solvation = -60.756720 kcal Electronic energy + Delta-G solvation = -27212.000258 eV Core-core repulsion = 22986.783345 eV Total energy + Delta-G solvation = -4225.216913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.92358 -43.30585 -40.78464 -40.07948 -38.85810 -37.89162 -37.26658 -36.18318 -34.43433 -33.02774 -31.80749 -30.47808 -28.85182 -27.57383 -25.19963 -24.94533 -24.17040 -23.23518 -21.77216 -20.72273 -20.36718 -19.78079 -19.52393 -18.81633 -18.71331 -18.31987 -17.70298 -17.59074 -17.12831 -16.65064 -16.44952 -16.10516 -15.81660 -15.49558 -14.96925 -14.90322 -14.44835 -14.15854 -14.00461 -13.95391 -13.52681 -13.39562 -12.92807 -12.86779 -12.75533 -12.66354 -12.52741 -12.31913 -12.23001 -12.12724 -11.48110 -11.06797 -10.83492 -10.56494 -9.93091 -9.74406 -8.30177 -6.46772 -1.30745 -0.40785 -0.25842 0.10508 0.35504 0.93023 1.29851 1.42815 1.44414 1.53217 1.58220 1.96630 2.24675 2.44856 2.75896 2.95705 3.02294 3.05392 3.60824 3.63824 3.73628 3.77191 3.89689 4.01571 4.24314 4.51669 4.77250 4.81441 4.98389 5.05756 5.16087 5.20666 5.41972 5.57920 5.61477 5.81265 6.01943 6.25808 6.61930 6.73331 7.18673 7.33481 8.82625 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.003701 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.312017 B = 7564.079858 C = 8443.934408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.273 3.727 10 N -0.693 5.693 11 C 0.502 3.498 12 O -0.593 6.593 13 C 0.115 3.885 14 N -0.529 5.529 15 C 0.642 3.358 16 O -0.503 6.503 17 O -0.223 6.223 18 C 0.024 3.976 19 C -0.008 4.008 20 C -0.073 4.073 21 C -0.030 4.030 22 C -0.043 4.043 23 N 0.019 4.981 24 O -0.091 6.091 25 O -0.227 6.227 26 C 0.095 3.905 27 H 0.269 0.731 28 H -0.014 1.014 29 H -0.012 1.012 30 H 0.410 0.590 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.206 0.794 34 H 0.226 0.774 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -26.397 9.835 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.150 3.850 10 N -0.342 5.342 11 C 0.287 3.713 12 O -0.475 6.475 13 C -0.009 4.009 14 N -0.258 5.258 15 C 0.397 3.603 16 O -0.387 6.387 17 O -0.128 6.128 18 C -0.023 4.023 19 C -0.026 4.026 20 C -0.091 4.091 21 C -0.049 4.049 22 C -0.129 4.129 23 N 0.538 4.462 24 O -0.328 6.328 25 O -0.422 6.422 26 C -0.005 4.005 27 H 0.078 0.922 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.246 0.754 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.223 0.777 34 H 0.243 0.757 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.665 -26.762 8.558 28.482 hybrid contribution 0.624 2.081 -0.358 2.202 sum 5.289 -24.681 8.200 26.540 Atomic orbital electron populations 1.70157 1.08352 1.28515 1.50072 1.26091 0.95794 1.03977 0.93758 0.85071 0.79115 0.77088 0.77692 1.17526 1.20442 1.20311 1.21635 0.94399 0.90342 1.52811 0.89612 1.18541 0.88498 0.83991 0.93971 1.45949 1.11447 1.04894 1.71906 1.20839 0.89427 0.85081 0.75923 1.90634 1.18773 1.85305 1.52794 1.21794 0.92670 0.77710 1.08683 1.45493 1.53463 1.21660 1.05218 1.18404 0.78002 0.78793 0.85065 1.91157 1.61304 1.68948 1.17287 1.85029 1.66988 1.39387 1.21397 1.19494 1.04592 0.97523 0.80714 1.21219 0.94104 0.96894 0.90366 1.21722 0.96428 0.96661 0.94315 1.21549 0.92120 0.90227 1.01035 1.20316 1.10944 0.91308 0.90287 1.43932 0.99716 1.02815 0.99694 1.94480 1.23815 1.92724 1.21825 1.94771 1.71605 1.13710 1.62147 1.18306 1.00445 0.94060 0.87719 0.92248 0.99635 0.99395 0.75419 0.84658 0.83185 0.77714 0.75744 0.79234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.55 -31.37 9.28 25.60 0.24 -31.13 16 8 H 0.09 4.39 7.60 -2.91 -0.02 4.36 16 9 C 0.27 15.83 5.43 85.63 0.46 16.29 16 10 N -0.69 -31.83 5.55 -466.80 -2.59 -34.42 16 11 C 0.50 22.40 6.01 87.66 0.53 22.93 16 12 O -0.59 -32.14 16.43 -3.05 -0.05 -32.19 16 13 C 0.11 3.75 5.66 85.63 0.48 4.23 16 14 N -0.53 -17.03 2.29 -765.12 -1.76 -18.78 16 15 C 0.64 21.92 9.07 129.79 1.18 23.10 16 16 O -0.50 -20.30 17.84 19.19 0.34 -19.96 16 17 O -0.22 -5.99 10.72 8.51 0.09 -5.90 16 18 C 0.02 0.47 7.35 22.65 0.17 0.64 16 19 C -0.01 -0.05 10.06 22.33 0.22 0.17 16 20 C -0.07 -0.16 10.03 22.28 0.22 0.06 16 21 C -0.03 -0.30 9.76 22.28 0.22 -0.08 16 22 C -0.04 -0.96 6.39 36.43 0.23 -0.73 16 23 N 0.02 0.53 3.80 -46.31 -0.18 0.35 16 24 O -0.09 -2.32 19.08 18.88 0.36 -1.96 16 25 O -0.23 -8.44 14.07 18.89 0.27 -8.17 16 26 C 0.10 2.47 6.73 38.31 0.26 2.73 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.41 15.57 8.32 -92.70 -0.77 14.80 16 31 H 0.14 3.91 5.63 -2.39 -0.01 3.90 16 32 H 0.15 4.05 8.11 -2.39 -0.02 4.03 16 33 H 0.21 -0.37 8.06 -2.91 -0.02 -0.39 16 34 H 0.23 -1.94 8.06 -2.91 -0.02 -1.97 16 35 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -91.80 323.58 3.89 -87.91 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.41 Total: 6.28 kcal Atomic # 6 Polarization: 34.18 SS G_CDS: 4.68 Total: 38.86 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.24 Total: -110.57 kcal Atomic # 8 Polarization: -69.19 SS G_CDS: 1.01 Total: -68.18 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -91.80 3.89 -87.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842570205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.150 kcal (2) G-P(sol) polarization free energy of solvation -91.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds