Wall clock time and date at job start Fri Apr 10 2020 15:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47281 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.47083 * 30.00233 * 3 2 1 6 6 H 1.48501 * 109.46912 * 149.99849 * 3 2 1 7 7 C 1.39937 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99798 * 163.06664 * 7 2 1 9 9 C 1.41317 * 119.99969 * 343.06697 * 7 2 1 10 10 C 1.40774 * 120.20553 * 334.54537 * 9 7 2 11 11 C 1.37643 * 120.03326 * 180.02562 * 10 9 7 12 12 C 1.38470 * 120.46438 * 0.24706 * 11 10 9 13 13 C 1.39627 * 120.41646 * 359.49642 * 12 11 10 14 14 C 1.48265 * 120.02414 * 180.23246 * 13 12 11 15 15 C 1.39461 * 119.93115 * 129.99739 * 14 13 12 16 16 C 1.37920 * 120.06575 * 179.71708 * 15 14 13 17 17 F 1.35101 * 120.03455 * 180.27123 * 16 15 14 18 18 C 1.40034 * 119.93187 * 0.55731 * 16 15 14 19 19 C 1.47403 * 120.06548 * 179.73959 * 18 16 15 20 20 N 1.34783 * 120.00141 * 89.98198 * 19 18 16 21 21 O 1.21607 * 120.00179 * 269.97322 * 19 18 16 22 22 C 1.40035 * 119.86462 * 359.72165 * 18 16 15 23 23 F 1.35097 * 120.03496 * 179.97438 * 22 18 16 24 24 C 1.37922 * 119.92850 * 359.97438 * 22 18 16 25 25 C 1.39170 * 119.95010 * 0.50534 * 13 12 11 26 26 F 1.35099 * 120.23009 * 179.77403 * 25 13 12 27 27 H 0.97003 * 120.00073 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.98147 * 0.03837 * 10 9 7 29 29 H 1.07998 * 119.76543 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.79182 * 179.72688 * 12 11 10 31 31 H 1.07997 * 119.96240 * 0.02562 * 15 14 13 32 32 H 0.97000 * 119.99545 * 359.97438 * 20 19 18 33 33 H 0.96992 * 120.00338 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.96147 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5400 1.4401 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0529 -1.2323 -0.2719 9 6 1.3474 -2.4090 0.3575 10 6 0.2175 -2.3714 1.1963 11 6 -0.4230 -3.5396 1.5422 12 6 0.0389 -4.7584 1.0747 13 6 1.1546 -4.8175 0.2373 14 6 1.6386 -6.1268 -0.2624 15 6 1.8851 -6.3042 -1.6235 16 6 2.3410 -7.5192 -2.0906 17 9 2.5848 -7.6886 -3.4086 18 6 2.5451 -8.5788 -1.1982 19 6 3.0267 -9.8804 -1.6950 20 7 4.3498 -10.1282 -1.7626 21 8 2.2303 -10.7306 -2.0437 22 6 2.2911 -8.3994 0.1672 23 9 2.4863 -9.4195 1.0312 24 6 1.8414 -7.1800 0.6290 25 6 1.8155 -3.6470 -0.1233 26 9 2.8984 -3.6981 -0.9294 27 1 -0.4850 0.8401 0.0004 28 1 -0.1471 -1.4253 1.5685 29 1 -1.2892 -3.5057 2.1863 30 1 -0.4694 -5.6687 1.3565 31 1 1.7237 -5.4877 -2.3118 32 1 4.9851 -9.4499 -1.4846 33 1 4.6668 -10.9847 -2.0891 34 1 1.6457 -7.0409 1.6820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244676367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:00 Heat of formation + Delta-G solvation = -138.508024 kcal Electronic energy + Delta-G solvation = -25720.354003 eV Core-core repulsion = 21360.758063 eV Total energy + Delta-G solvation = -4359.595940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.11895 -49.06664 -47.51633 -39.82245 -38.60560 -37.13826 -34.15352 -33.81619 -31.89899 -30.46634 -29.84155 -28.61396 -25.57923 -24.33676 -22.94245 -21.49702 -20.93806 -20.60003 -18.40635 -18.03978 -17.36488 -17.17659 -16.90246 -16.24588 -15.92387 -15.79003 -15.37961 -15.32656 -15.26934 -14.77685 -14.49464 -14.30170 -14.28488 -14.15967 -13.30538 -13.05839 -12.84534 -12.28545 -12.13584 -12.01625 -11.87625 -11.75142 -11.35722 -11.20464 -10.92662 -10.64056 -10.37363 -10.07808 -9.93999 -9.84603 -9.47957 -9.04512 -8.80397 -7.73183 -7.52300 -7.01973 -4.63045 0.64682 0.99378 2.28969 2.36655 2.47046 2.95594 2.96300 3.03109 3.22015 3.39330 3.67055 3.76422 4.24996 4.41611 4.51787 4.72618 4.80349 5.15725 5.23937 5.57426 5.63028 5.66566 5.77889 5.95188 6.06577 6.28871 6.35721 6.49540 6.57776 6.71736 6.83631 6.94426 7.02083 7.19695 7.30863 7.64511 7.72304 7.82750 7.96727 8.28508 8.51340 8.57322 9.91848 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.003302 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.923872 B = 8476.762514 C = 9097.350547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.085 3.915 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.194 4.194 13 C -0.082 4.082 14 C 0.067 3.933 15 C -0.149 4.149 16 C 0.164 3.836 17 F -0.126 7.126 18 C -0.224 4.224 19 C 0.580 3.420 20 N -0.842 5.842 21 O -0.526 6.526 22 C 0.161 3.839 23 F -0.127 7.127 24 C -0.156 4.156 25 C -0.002 4.002 26 F -0.155 7.155 27 H 0.286 0.714 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -8.862 0.608 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.081 3.919 10 C -0.152 4.152 11 C -0.129 4.129 12 C -0.213 4.213 13 C -0.083 4.083 14 C 0.067 3.933 15 C -0.168 4.168 16 C 0.144 3.856 17 F -0.104 7.104 18 C -0.229 4.229 19 C 0.363 3.637 20 N -0.405 5.405 21 O -0.402 6.402 22 C 0.141 3.859 23 F -0.105 7.105 24 C -0.175 4.175 25 C -0.023 4.023 26 F -0.134 7.134 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.170 0.830 32 H 0.234 0.766 33 H 0.237 0.763 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.428 -9.181 0.354 10.199 hybrid contribution 0.977 0.549 -0.301 1.161 sum 5.405 -8.632 0.054 10.185 Atomic orbital electron populations 1.69785 1.07661 1.29919 1.33694 1.25928 0.94808 1.01628 0.91930 0.86204 0.80630 0.79888 0.79545 1.19213 1.19845 1.18210 1.19530 0.98184 0.90742 1.39502 0.89701 1.17550 0.92735 0.90606 0.90965 1.21326 0.97628 0.97525 0.98763 1.20675 0.99256 0.92683 1.00299 1.20260 0.99176 0.97226 1.04638 1.18133 0.98973 0.88475 1.02754 1.18676 0.90665 0.92987 0.91012 1.21332 1.02412 0.96302 0.96745 1.17062 0.98533 0.92737 0.77301 1.91542 1.91601 1.95900 1.31351 1.19592 1.14387 0.95606 0.93324 1.17768 0.82868 0.86148 0.76892 1.43776 1.06979 1.21046 1.68742 1.90857 1.55024 1.46651 1.47644 1.17040 0.99073 0.85087 0.84719 1.91535 1.92493 1.57886 1.68605 1.21236 1.03609 0.90658 1.02010 1.17789 0.90463 0.93591 1.00421 1.91295 1.53224 1.97186 1.71687 0.90337 0.85399 0.88111 0.87880 0.83033 0.76575 0.76338 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.51 10.96 55.55 0.61 -17.90 16 2 C 0.08 1.76 5.15 -17.34 -0.09 1.67 16 3 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 7 C -0.45 -11.12 8.77 -37.78 -0.33 -11.46 16 8 H 0.08 2.07 7.74 -52.49 -0.41 1.66 16 9 C 0.08 2.06 5.57 -106.79 -0.59 1.47 16 10 C -0.13 -3.04 8.68 -38.84 -0.34 -3.38 16 11 C -0.11 -2.22 10.00 -39.71 -0.40 -2.62 16 12 C -0.19 -3.70 9.49 -38.98 -0.37 -4.07 16 13 C -0.08 -1.64 5.47 -104.91 -0.57 -2.21 16 14 C 0.07 1.14 5.32 -104.86 -0.56 0.59 16 15 C -0.15 -2.45 8.81 -39.24 -0.35 -2.79 16 16 C 0.16 2.52 7.28 -39.02 -0.28 2.23 16 17 F -0.13 -1.93 16.82 2.25 0.04 -1.89 16 18 C -0.22 -3.32 5.64 -104.82 -0.59 -3.91 16 19 C 0.58 8.40 6.78 -12.53 -0.08 8.32 16 20 N -0.84 -8.09 8.87 30.43 0.27 -7.82 16 21 O -0.53 -9.53 17.94 5.27 0.09 -9.43 16 22 C 0.16 2.33 7.28 -39.02 -0.28 2.05 16 23 F -0.13 -1.80 16.82 2.25 0.04 -1.76 16 24 C -0.16 -2.32 9.44 -39.24 -0.37 -2.69 16 25 C 0.00 -0.05 7.16 -38.26 -0.27 -0.33 16 26 F -0.15 -3.48 15.34 2.25 0.03 -3.45 16 27 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 28 H 0.13 3.01 6.18 -52.49 -0.32 2.68 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.10 1.71 8.02 -52.49 -0.42 1.29 16 31 H 0.15 2.53 7.77 -52.49 -0.41 2.12 16 32 H 0.41 2.94 8.81 -40.82 -0.36 2.58 16 33 H 0.41 3.05 8.93 -40.82 -0.36 2.69 16 34 H 0.15 2.02 8.02 -52.49 -0.42 1.60 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -27.49 320.35 -6.87 -34.35 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.26 Total: 7.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -5.48 Total: -17.15 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.88 Total: -25.72 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.11 Total: -7.10 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.49 -6.87 -34.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.157 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds