Wall clock time and date at job start Fri Apr 10 2020 15:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47281 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.47083 * 30.00233 * 3 2 1 6 6 H 1.48501 * 109.46912 * 149.99849 * 3 2 1 7 7 C 1.39937 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99798 * 163.06664 * 7 2 1 9 9 C 1.41317 * 119.99969 * 343.06697 * 7 2 1 10 10 C 1.40774 * 120.20553 * 334.54537 * 9 7 2 11 11 C 1.37643 * 120.03326 * 180.02562 * 10 9 7 12 12 C 1.38470 * 120.46438 * 0.24706 * 11 10 9 13 13 C 1.39627 * 120.41646 * 359.49642 * 12 11 10 14 14 C 1.48265 * 120.02414 * 180.23246 * 13 12 11 15 15 C 1.39461 * 119.93115 * 129.99739 * 14 13 12 16 16 C 1.37920 * 120.06575 * 179.71708 * 15 14 13 17 17 F 1.35101 * 120.03455 * 180.27123 * 16 15 14 18 18 C 1.40034 * 119.93187 * 0.55731 * 16 15 14 19 19 C 1.47403 * 120.06548 * 179.73959 * 18 16 15 20 20 N 1.34783 * 120.00141 * 89.98198 * 19 18 16 21 21 O 1.21607 * 120.00179 * 269.97322 * 19 18 16 22 22 C 1.40035 * 119.86462 * 359.72165 * 18 16 15 23 23 F 1.35097 * 120.03496 * 179.97438 * 22 18 16 24 24 C 1.37922 * 119.92850 * 359.97438 * 22 18 16 25 25 C 1.39170 * 119.95010 * 0.50534 * 13 12 11 26 26 F 1.35099 * 120.23009 * 179.77403 * 25 13 12 27 27 H 0.97003 * 120.00073 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.98147 * 0.03837 * 10 9 7 29 29 H 1.07998 * 119.76543 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.79182 * 179.72688 * 12 11 10 31 31 H 1.07997 * 119.96240 * 0.02562 * 15 14 13 32 32 H 0.97000 * 119.99545 * 359.97438 * 20 19 18 33 33 H 0.96992 * 120.00338 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.96147 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5400 1.4401 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0529 -1.2323 -0.2719 9 6 1.3474 -2.4090 0.3575 10 6 0.2175 -2.3714 1.1963 11 6 -0.4230 -3.5396 1.5422 12 6 0.0389 -4.7584 1.0747 13 6 1.1546 -4.8175 0.2373 14 6 1.6386 -6.1268 -0.2624 15 6 1.8851 -6.3042 -1.6235 16 6 2.3410 -7.5192 -2.0906 17 9 2.5848 -7.6886 -3.4086 18 6 2.5451 -8.5788 -1.1982 19 6 3.0267 -9.8804 -1.6950 20 7 4.3498 -10.1282 -1.7626 21 8 2.2303 -10.7306 -2.0437 22 6 2.2911 -8.3994 0.1672 23 9 2.4863 -9.4195 1.0312 24 6 1.8414 -7.1800 0.6290 25 6 1.8155 -3.6470 -0.1233 26 9 2.8984 -3.6981 -0.9294 27 1 -0.4850 0.8401 0.0004 28 1 -0.1471 -1.4253 1.5685 29 1 -1.2892 -3.5057 2.1863 30 1 -0.4694 -5.6687 1.3565 31 1 1.7237 -5.4877 -2.3118 32 1 4.9851 -9.4499 -1.4846 33 1 4.6668 -10.9847 -2.0891 34 1 1.6457 -7.0409 1.6820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244676367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:59 Heat of formation + Delta-G solvation = -153.849491 kcal Electronic energy + Delta-G solvation = -25721.019259 eV Core-core repulsion = 21360.758063 eV Total energy + Delta-G solvation = -4360.261196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.30505 -50.26929 -49.25303 -41.01367 -39.95440 -38.67687 -35.77389 -34.91401 -33.29256 -31.77116 -31.45456 -30.08710 -27.30233 -25.67621 -24.19877 -22.89596 -22.52710 -21.95632 -19.74427 -19.23656 -18.61575 -18.42658 -18.20549 -17.93475 -17.26766 -17.04680 -16.80679 -16.57090 -16.52322 -16.34385 -15.98629 -15.82815 -15.48534 -15.46613 -14.81520 -14.63103 -14.11252 -13.79677 -13.70393 -13.49894 -13.27960 -13.11140 -12.91239 -12.75053 -12.50567 -12.17409 -11.82322 -11.55501 -11.44972 -11.13655 -10.91823 -10.40597 -10.02027 -9.42570 -9.14097 -8.71743 -6.43528 -0.63289 -0.23031 0.76176 0.81664 1.14905 1.39218 1.46461 1.53523 2.04688 2.19240 2.21969 2.45882 2.62190 3.10887 3.29452 3.50165 3.59801 3.63233 3.86539 3.98146 4.32079 4.43794 4.47357 4.51983 4.73250 4.76661 4.92122 5.01015 5.19075 5.26120 5.42629 5.55411 5.64343 5.66306 5.97500 5.98917 6.10688 6.12587 6.52973 6.76135 6.83436 7.01838 8.24373 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.003302 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.923872 B = 8476.762514 C = 9097.350547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.042 3.958 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.072 0.928 9 C 0.056 3.944 10 C -0.153 4.153 11 C -0.107 4.107 12 C -0.181 4.181 13 C -0.075 4.075 14 C 0.050 3.950 15 C -0.151 4.151 16 C 0.164 3.836 17 F -0.126 7.126 18 C -0.216 4.216 19 C 0.576 3.424 20 N -0.815 5.815 21 O -0.568 6.568 22 C 0.168 3.832 23 F -0.121 7.121 24 C -0.140 4.140 25 C -0.029 4.029 26 F -0.161 7.161 27 H 0.293 0.707 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.420 0.580 33 H 0.419 0.581 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -10.237 1.414 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.174 4.174 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.522 4.522 8 H 0.090 0.910 9 C 0.053 3.947 10 C -0.173 4.173 11 C -0.126 4.126 12 C -0.200 4.200 13 C -0.076 4.076 14 C 0.049 3.951 15 C -0.170 4.170 16 C 0.144 3.856 17 F -0.105 7.105 18 C -0.221 4.221 19 C 0.359 3.641 20 N -0.379 5.379 21 O -0.447 6.447 22 C 0.148 3.852 23 F -0.099 7.099 24 C -0.158 4.158 25 C -0.049 4.049 26 F -0.140 7.140 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.251 0.749 33 H 0.253 0.747 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.698 -10.568 1.166 11.624 hybrid contribution 0.917 0.763 -0.548 1.313 sum 5.615 -9.805 0.619 11.316 Atomic orbital electron populations 1.69810 1.08707 1.31084 1.34425 1.26639 0.95532 1.04202 0.91072 0.85227 0.79227 0.76004 0.79510 1.18975 1.18456 1.18429 1.19666 0.98005 0.92321 1.42184 0.91019 1.17886 0.93717 0.91347 0.91749 1.21318 0.98101 0.98228 0.99632 1.21021 0.99570 0.92045 0.99930 1.20712 0.98206 0.98200 1.02920 1.18349 0.98485 0.88890 1.01843 1.18493 0.92639 0.92428 0.91530 1.21243 1.02633 0.96517 0.96635 1.16950 0.98728 0.92551 0.77383 1.91541 1.91615 1.95871 1.31425 1.19721 1.13420 0.95543 0.93447 1.17780 0.83965 0.85514 0.76842 1.43582 1.05587 1.22023 1.66757 1.90849 1.56327 1.47639 1.49847 1.16931 0.98681 0.85069 0.84564 1.91559 1.92368 1.57592 1.68362 1.21301 1.02170 0.89823 1.02544 1.18051 0.91095 0.94399 1.01383 1.91261 1.53567 1.97239 1.71975 0.89591 0.86725 0.85078 0.84294 0.84051 0.74881 0.74733 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.40 10.96 21.83 0.24 -39.16 16 2 C 0.04 1.99 5.15 85.25 0.44 2.43 16 3 Si 0.98 36.17 29.59 68.60 2.03 38.20 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.49 -25.47 8.77 23.44 0.21 -25.27 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.06 2.82 5.57 -21.27 -0.12 2.70 16 10 C -0.15 -7.14 8.68 22.75 0.20 -6.94 16 11 C -0.11 -4.16 10.00 22.18 0.22 -3.94 16 12 C -0.18 -6.50 9.49 22.66 0.22 -6.29 16 13 C -0.07 -2.90 5.47 -20.05 -0.11 -3.01 16 14 C 0.05 1.61 5.32 -20.02 -0.11 1.50 16 15 C -0.15 -4.85 8.81 22.49 0.20 -4.65 16 16 C 0.16 4.82 7.28 22.63 0.16 4.98 16 17 F -0.13 -3.74 16.82 44.97 0.76 -2.98 16 18 C -0.22 -5.95 5.64 -19.99 -0.11 -6.06 16 19 C 0.58 15.45 6.78 86.66 0.59 16.04 16 20 N -0.82 -13.47 8.87 -175.90 -1.56 -15.03 16 21 O -0.57 -19.69 17.94 -4.05 -0.07 -19.76 16 22 C 0.17 4.39 7.28 22.63 0.16 4.55 16 23 F -0.12 -3.03 16.82 44.97 0.76 -2.27 16 24 C -0.14 -3.75 9.44 22.49 0.21 -3.54 16 25 C -0.03 -1.35 7.16 23.12 0.17 -1.18 16 26 F -0.16 -7.50 15.34 44.97 0.69 -6.81 16 27 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 28 H 0.11 5.56 6.18 -2.91 -0.02 5.55 16 29 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.14 4.00 8.02 -2.91 -0.02 3.98 16 31 H 0.14 4.79 7.77 -2.91 -0.02 4.76 16 32 H 0.42 4.81 8.81 -92.71 -0.82 4.00 16 33 H 0.42 5.14 8.93 -92.71 -0.83 4.31 16 34 H 0.17 3.89 8.02 -2.91 -0.02 3.87 16 Total: -1.00 -60.92 320.35 4.74 -56.19 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.43 Total: 20.29 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 2.33 Total: -28.66 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.32 Total: -54.19 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 2.20 Total: -12.07 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -60.92 4.74 -56.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.663 kcal (2) G-P(sol) polarization free energy of solvation -60.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds