Wall clock time and date at job start Fri Apr 10 2020 15:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46975 * 239.99776 * 3 2 1 5 5 H 1.48491 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47084 * 119.99817 * 3 2 1 7 7 C 1.40077 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 163.30633 * 7 2 1 9 9 C 1.40905 * 120.00087 * 343.31525 * 7 2 1 10 10 C 1.40968 * 120.13267 * 334.27344 * 9 7 2 11 11 C 1.36173 * 119.90094 * 180.02562 * 10 9 7 12 12 C 1.40055 * 120.18874 * 0.02562 * 11 10 9 13 13 C 1.47915 * 119.86685 * 179.97438 * 12 11 10 14 14 C 1.39686 * 119.95362 * 359.72982 * 13 12 11 15 15 C 1.37865 * 120.04982 * 179.76195 * 14 13 12 16 16 F 1.35099 * 120.02785 * 180.27821 * 15 14 13 17 17 C 1.40070 * 119.94737 * 0.50678 * 15 14 13 18 18 C 1.47435 * 120.04267 * 179.76775 * 17 15 14 19 19 N 1.34772 * 120.00087 * 89.98303 * 18 17 15 20 20 O 1.21607 * 119.99290 * 269.97773 * 18 17 15 21 21 C 1.40070 * 119.91388 * 359.74596 * 17 15 14 22 22 F 1.35096 * 120.02382 * 179.97438 * 21 17 15 23 23 C 1.37870 * 119.94894 * 359.97438 * 21 17 15 24 24 C 1.39826 * 120.27275 * 359.73100 * 12 11 10 25 25 C 1.36565 * 120.08741 * 0.54231 * 24 12 11 26 26 F 1.35099 * 120.09293 * 179.72830 * 25 24 12 27 27 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.04694 * 0.04514 * 10 9 7 29 29 H 1.08001 * 119.90556 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.97307 * 0.02562 * 14 13 12 31 31 H 0.96997 * 120.00012 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99784 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.97248 * 180.02562 * 23 21 17 34 34 H 1.07990 * 119.95676 * 180.28327 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2767 2.7464 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0540 -1.2329 -0.2681 9 6 1.3482 -2.4075 0.3514 10 6 0.2171 -2.3705 1.1920 11 6 -0.4168 -3.5278 1.5285 12 6 0.0521 -4.7547 1.0423 13 6 -0.6415 -6.0074 1.4128 14 6 -1.7584 -5.9647 2.2507 15 6 -2.4094 -7.1307 2.5933 16 9 -3.4929 -7.0883 3.3991 17 6 -1.9436 -8.3598 2.1092 18 6 -2.6351 -9.6085 2.4785 19 7 -3.6424 -10.0727 1.7128 20 8 -2.2964 -10.2194 3.4739 21 6 -0.8203 -8.4010 1.2735 22 9 -0.3689 -9.5853 0.8057 23 6 -0.1758 -7.2320 0.9286 24 6 1.1703 -4.7998 0.2040 25 6 1.8179 -3.6466 -0.1362 26 9 2.9016 -3.6905 -0.9417 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1463 -1.4256 1.5682 29 1 -1.2831 -3.4995 2.1728 30 1 -2.1148 -5.0172 2.6268 31 1 -3.9127 -9.5852 0.9190 32 1 -4.0971 -10.8944 1.9556 33 1 0.6901 -7.2633 0.2839 34 1 1.5248 -5.7482 -0.1716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244676414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:02 Heat of formation + Delta-G solvation = -140.655751 kcal Electronic energy + Delta-G solvation = -25328.290420 eV Core-core repulsion = 20968.601348 eV Total energy + Delta-G solvation = -4359.689072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.97617 -48.95288 -47.51938 -39.67901 -38.66885 -37.10339 -34.38688 -33.72964 -31.73161 -30.60427 -29.35037 -29.25673 -26.12872 -23.64307 -23.05106 -21.50835 -20.91659 -20.44995 -18.27210 -17.90012 -17.65304 -17.13930 -17.01899 -16.05541 -15.77397 -15.74154 -15.36580 -15.25420 -15.23905 -14.61711 -14.33733 -14.29910 -14.18982 -14.17068 -13.47967 -13.02903 -12.70155 -12.39005 -12.24690 -12.10015 -11.84988 -11.77299 -11.35296 -11.29575 -11.01710 -10.79826 -10.20942 -10.17234 -9.95023 -9.83830 -9.71145 -9.00301 -8.67512 -7.86674 -7.56303 -7.28745 -4.80412 0.73166 1.18262 2.29580 2.43622 2.59116 2.80729 2.82715 2.86918 3.39062 3.55128 3.60744 3.86374 4.23443 4.48638 4.70131 4.95387 4.96629 5.13413 5.29226 5.62998 5.67643 5.82017 5.90180 6.00859 6.17533 6.21877 6.32774 6.54633 6.59607 6.67133 6.80076 6.89215 7.12474 7.13965 7.24370 7.55217 7.60909 7.67834 8.07936 8.09504 8.20622 8.39464 9.58278 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.002976 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.858148 B = 9407.465327 C =10285.255126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.092 0.908 9 C 0.098 3.902 10 C -0.158 4.158 11 C -0.067 4.067 12 C -0.206 4.206 13 C 0.103 3.897 14 C -0.193 4.193 15 C 0.175 3.825 16 F -0.131 7.131 17 C -0.259 4.259 18 C 0.583 3.417 19 N -0.844 5.844 20 O -0.531 6.531 21 C 0.175 3.825 22 F -0.131 7.131 23 C -0.196 4.196 24 C -0.079 4.079 25 C -0.030 4.030 26 F -0.160 7.160 27 H 0.293 0.707 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.147 0.853 31 H 0.404 0.596 32 H 0.403 0.597 33 H 0.145 0.855 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -6.250 0.039 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.153 4.153 3 Si 0.744 3.256 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.441 4.441 8 H 0.110 0.890 9 C 0.093 3.907 10 C -0.177 4.177 11 C -0.086 4.086 12 C -0.207 4.207 13 C 0.102 3.898 14 C -0.212 4.212 15 C 0.154 3.846 16 F -0.110 7.110 17 C -0.264 4.264 18 C 0.366 3.634 19 N -0.408 5.408 20 O -0.407 6.407 21 C 0.155 3.845 22 F -0.110 7.110 23 C -0.215 4.215 24 C -0.098 4.098 25 C -0.050 4.050 26 F -0.139 7.139 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.121 0.879 30 H 0.164 0.836 31 H 0.233 0.767 32 H 0.234 0.766 33 H 0.162 0.838 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.277 -6.377 0.678 8.305 hybrid contribution -0.022 0.372 -0.486 0.612 sum -5.299 -6.005 0.192 8.011 Atomic orbital electron populations 1.69749 1.07962 1.30954 1.29346 1.26163 0.94979 1.02300 0.91875 0.86103 0.80175 0.78580 0.80719 1.18330 1.19696 1.18137 1.19860 0.98383 0.90907 1.34966 0.88952 1.17819 0.92175 0.90996 0.89662 1.20840 0.98591 0.97525 1.00774 1.20577 0.98017 0.91884 0.98078 1.17564 1.01585 0.90589 1.10994 1.18537 0.90037 0.92421 0.88787 1.21108 0.98745 0.97303 1.04076 1.17035 0.84601 0.92220 0.90702 1.91514 1.51821 1.97192 1.70434 1.19340 1.02850 0.93495 1.10730 1.17831 0.79214 0.83858 0.82449 1.43809 1.37189 1.29577 1.30196 1.90834 1.64876 1.58796 1.26189 1.17032 0.92357 0.81168 0.93979 1.91512 1.88134 1.44847 1.86490 1.21113 1.03774 0.90122 1.06513 1.20361 0.95463 0.96166 0.97833 1.17381 0.91184 0.94709 1.01684 1.91309 1.53258 1.97303 1.72060 0.89537 0.85340 0.87897 0.83552 0.76715 0.76617 0.83754 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.58 10.95 55.55 0.61 -15.97 16 2 C 0.07 1.50 5.15 -17.31 -0.09 1.41 16 3 Si 0.92 16.01 29.59 -169.99 -5.03 10.98 16 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 5 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 6 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 7 C -0.42 -9.68 8.76 -37.88 -0.33 -10.01 16 8 H 0.09 2.11 7.74 -52.48 -0.41 1.70 16 9 C 0.10 2.29 5.57 -106.73 -0.59 1.70 16 10 C -0.16 -3.48 8.62 -39.29 -0.34 -3.82 16 11 C -0.07 -1.31 9.35 -39.64 -0.37 -1.68 16 12 C -0.21 -3.94 5.90 -104.66 -0.62 -4.56 16 13 C 0.10 1.72 5.88 -104.86 -0.62 1.10 16 14 C -0.19 -2.99 9.38 -39.18 -0.37 -3.35 16 15 C 0.17 2.67 7.28 -39.03 -0.28 2.39 16 16 F -0.13 -1.99 16.82 2.25 0.04 -1.95 16 17 C -0.26 -3.99 5.64 -104.78 -0.59 -4.58 16 18 C 0.58 8.85 6.78 -12.52 -0.08 8.76 16 19 N -0.84 -8.60 8.87 30.43 0.27 -8.33 16 20 O -0.53 -10.04 17.94 5.27 0.09 -9.94 16 21 C 0.17 2.69 7.28 -39.03 -0.28 2.40 16 22 F -0.13 -2.01 16.82 2.25 0.04 -1.97 16 23 C -0.20 -3.06 9.38 -39.18 -0.37 -3.42 16 24 C -0.08 -1.59 9.33 -39.59 -0.37 -1.95 16 25 C -0.03 -0.67 7.26 -39.06 -0.28 -0.95 16 26 F -0.16 -3.63 16.71 2.25 0.04 -3.59 16 27 H 0.29 5.73 8.29 -40.82 -0.34 5.39 16 28 H 0.13 2.86 6.19 -52.49 -0.32 2.54 16 29 H 0.10 1.74 6.15 -52.49 -0.32 1.42 16 30 H 0.15 2.08 6.15 -52.49 -0.32 1.76 16 31 H 0.40 3.12 8.81 -40.82 -0.36 2.76 16 32 H 0.40 3.27 8.93 -40.82 -0.36 2.91 16 33 H 0.14 2.09 6.15 -52.49 -0.32 1.76 16 34 H 0.11 1.92 6.15 -52.49 -0.32 1.60 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -26.45 315.14 -6.67 -33.12 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -1.88 Total: 9.50 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -5.59 Total: -16.58 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.88 Total: -24.31 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.03 Total: 10.98 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.45 -6.67 -33.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.540 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds