Wall clock time and date at job start Fri Apr 10 2020 15:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46975 * 239.99776 * 3 2 1 5 5 H 1.48491 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47084 * 119.99817 * 3 2 1 7 7 C 1.40077 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 163.30633 * 7 2 1 9 9 C 1.40905 * 120.00087 * 343.31525 * 7 2 1 10 10 C 1.40968 * 120.13267 * 334.27344 * 9 7 2 11 11 C 1.36173 * 119.90094 * 180.02562 * 10 9 7 12 12 C 1.40055 * 120.18874 * 0.02562 * 11 10 9 13 13 C 1.47915 * 119.86685 * 179.97438 * 12 11 10 14 14 C 1.39686 * 119.95362 * 359.72982 * 13 12 11 15 15 C 1.37865 * 120.04982 * 179.76195 * 14 13 12 16 16 F 1.35099 * 120.02785 * 180.27821 * 15 14 13 17 17 C 1.40070 * 119.94737 * 0.50678 * 15 14 13 18 18 C 1.47435 * 120.04267 * 179.76775 * 17 15 14 19 19 N 1.34772 * 120.00087 * 89.98303 * 18 17 15 20 20 O 1.21607 * 119.99290 * 269.97773 * 18 17 15 21 21 C 1.40070 * 119.91388 * 359.74596 * 17 15 14 22 22 F 1.35096 * 120.02382 * 179.97438 * 21 17 15 23 23 C 1.37870 * 119.94894 * 359.97438 * 21 17 15 24 24 C 1.39826 * 120.27275 * 359.73100 * 12 11 10 25 25 C 1.36565 * 120.08741 * 0.54231 * 24 12 11 26 26 F 1.35099 * 120.09293 * 179.72830 * 25 24 12 27 27 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.04694 * 0.04514 * 10 9 7 29 29 H 1.08001 * 119.90556 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.97307 * 0.02562 * 14 13 12 31 31 H 0.96997 * 120.00012 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99784 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.97248 * 180.02562 * 23 21 17 34 34 H 1.07990 * 119.95676 * 180.28327 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2767 2.7464 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0540 -1.2329 -0.2681 9 6 1.3482 -2.4075 0.3514 10 6 0.2171 -2.3705 1.1920 11 6 -0.4168 -3.5278 1.5285 12 6 0.0521 -4.7547 1.0423 13 6 -0.6415 -6.0074 1.4128 14 6 -1.7584 -5.9647 2.2507 15 6 -2.4094 -7.1307 2.5933 16 9 -3.4929 -7.0883 3.3991 17 6 -1.9436 -8.3598 2.1092 18 6 -2.6351 -9.6085 2.4785 19 7 -3.6424 -10.0727 1.7128 20 8 -2.2964 -10.2194 3.4739 21 6 -0.8203 -8.4010 1.2735 22 9 -0.3689 -9.5853 0.8057 23 6 -0.1758 -7.2320 0.9286 24 6 1.1703 -4.7998 0.2040 25 6 1.8179 -3.6466 -0.1362 26 9 2.9016 -3.6905 -0.9417 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1463 -1.4256 1.5682 29 1 -1.2831 -3.4995 2.1728 30 1 -2.1148 -5.0172 2.6268 31 1 -3.9127 -9.5852 0.9190 32 1 -4.0971 -10.8944 1.9556 33 1 0.6901 -7.2633 0.2839 34 1 1.5248 -5.7482 -0.1716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244676414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:01 Heat of formation + Delta-G solvation = -155.135769 kcal Electronic energy + Delta-G solvation = -25328.918321 eV Core-core repulsion = 20968.601348 eV Total energy + Delta-G solvation = -4360.316973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.20723 -50.18235 -49.24505 -40.94043 -40.07022 -38.57857 -35.92622 -34.84814 -33.15638 -31.98183 -30.82843 -30.77152 -27.63610 -25.06400 -24.39946 -22.91522 -22.39438 -21.82113 -19.57954 -19.37313 -18.93059 -18.43272 -18.15189 -17.58505 -17.17852 -16.99521 -16.74919 -16.62330 -16.48039 -16.15445 -16.02727 -15.68501 -15.45592 -15.40330 -14.90968 -14.54505 -14.09146 -13.87477 -13.74535 -13.56799 -13.21265 -13.18084 -12.85931 -12.72863 -12.45652 -12.22969 -11.74522 -11.57479 -11.44113 -11.22926 -10.87240 -10.43325 -9.91606 -9.48474 -9.12625 -8.83953 -6.49009 -0.59482 -0.07931 0.78430 0.93422 1.23359 1.37873 1.46844 1.50704 2.12946 2.19164 2.33244 2.59820 2.69824 3.20932 3.48595 3.49857 3.70011 3.73457 4.00651 4.06173 4.21921 4.38693 4.59989 4.69670 4.70409 4.82828 4.94432 5.01058 5.07900 5.26890 5.51229 5.54304 5.68240 5.69827 5.92762 5.98075 6.05244 6.17278 6.43203 6.58851 6.75122 7.08157 8.07020 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.002976 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.858148 B = 9407.465327 C =10285.255126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.040 3.960 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.080 0.920 9 C 0.071 3.929 10 C -0.173 4.173 11 C -0.067 4.067 12 C -0.192 4.192 13 C 0.089 3.911 14 C -0.178 4.178 15 C 0.173 3.827 16 F -0.128 7.128 17 C -0.247 4.247 18 C 0.577 3.423 19 N -0.817 5.817 20 O -0.574 6.574 21 C 0.172 3.828 22 F -0.129 7.129 23 C -0.183 4.183 24 C -0.080 4.080 25 C -0.062 4.062 26 F -0.169 7.169 27 H 0.301 0.699 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.162 0.838 31 H 0.419 0.581 32 H 0.417 0.583 33 H 0.157 0.843 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 -7.647 0.413 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.068 3.932 10 C -0.192 4.192 11 C -0.085 4.085 12 C -0.193 4.193 13 C 0.088 3.912 14 C -0.197 4.197 15 C 0.153 3.847 16 F -0.106 7.106 17 C -0.252 4.252 18 C 0.360 3.640 19 N -0.381 5.381 20 O -0.453 6.453 21 C 0.152 3.848 22 F -0.107 7.107 23 C -0.201 4.201 24 C -0.099 4.099 25 C -0.082 4.082 26 F -0.148 7.148 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.251 0.749 32 H 0.250 0.750 33 H 0.174 0.826 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.881 -7.801 1.015 10.452 hybrid contribution 0.245 0.380 -0.530 0.696 sum -6.637 -7.422 0.485 9.968 Atomic orbital electron populations 1.69753 1.08907 1.32057 1.30491 1.26826 0.95642 1.04580 0.90948 0.85167 0.78967 0.75030 0.80284 1.18594 1.18263 1.18155 1.19938 0.98282 0.92352 1.38448 0.90217 1.18136 0.93109 0.91617 0.90382 1.20848 0.98924 0.98169 1.01293 1.20874 0.98469 0.91273 0.97905 1.17791 1.00734 0.91484 1.09331 1.18389 0.90870 0.91703 0.90210 1.21232 0.97684 0.98086 1.02671 1.16980 0.84828 0.92059 0.90869 1.91531 1.51625 1.97156 1.70330 1.19559 1.02425 0.93888 1.09319 1.17880 0.80008 0.83654 0.82425 1.43596 1.35231 1.29702 1.29582 1.90830 1.66473 1.59889 1.28133 1.16979 0.92368 0.81212 0.94221 1.91527 1.88096 1.44656 1.86449 1.21226 1.03595 0.89715 1.05604 1.20624 0.95330 0.96351 0.97605 1.17687 0.91967 0.95604 1.02924 1.91267 1.53737 1.97370 1.72410 0.88766 0.86212 0.84997 0.82098 0.74920 0.75000 0.82566 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.58 10.95 21.85 0.24 -35.34 16 2 C 0.04 1.78 5.15 85.30 0.44 2.22 16 3 Si 0.99 33.64 29.59 68.60 2.03 35.67 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 6 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.46 -22.85 8.76 23.37 0.20 -22.65 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.07 3.49 5.57 -21.23 -0.12 3.37 16 10 C -0.17 -7.78 8.62 22.46 0.19 -7.59 16 11 C -0.07 -2.56 9.35 22.23 0.21 -2.35 16 12 C -0.19 -7.02 5.90 -19.89 -0.12 -7.14 16 13 C 0.09 2.70 5.88 -20.02 -0.12 2.59 16 14 C -0.18 -4.89 9.38 22.53 0.21 -4.68 16 15 C 0.17 4.70 7.28 22.63 0.16 4.87 16 16 F -0.13 -3.47 16.82 44.97 0.76 -2.71 16 17 C -0.25 -6.82 5.64 -19.97 -0.11 -6.93 16 18 C 0.58 15.85 6.78 86.67 0.59 16.44 16 19 N -0.82 -13.83 8.87 -175.88 -1.56 -15.39 16 20 O -0.57 -20.51 17.94 -4.05 -0.07 -20.58 16 21 C 0.17 4.74 7.28 22.63 0.16 4.91 16 22 F -0.13 -3.55 16.82 44.97 0.76 -2.79 16 23 C -0.18 -5.11 9.38 22.53 0.21 -4.89 16 24 C -0.08 -3.16 9.33 22.26 0.21 -2.95 16 25 C -0.06 -2.88 7.26 22.60 0.16 -2.71 16 26 F -0.17 -7.94 16.71 44.97 0.75 -7.19 16 27 H 0.30 12.01 8.29 -92.71 -0.77 11.24 16 28 H 0.12 5.52 6.19 -2.91 -0.02 5.50 16 29 H 0.13 4.15 6.15 -2.91 -0.02 4.13 16 30 H 0.16 3.96 6.15 -2.91 -0.02 3.94 16 31 H 0.42 4.84 8.81 -92.71 -0.82 4.02 16 32 H 0.42 5.35 8.93 -92.71 -0.83 4.52 16 33 H 0.16 4.01 6.15 -2.91 -0.02 3.99 16 34 H 0.13 4.45 6.15 -2.92 -0.02 4.43 16 Total: -1.00 -58.54 315.14 4.79 -53.76 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.41 Total: 22.08 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 2.29 Total: -27.50 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -1.32 Total: -50.73 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.07 Total: -20.58 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 2.26 Total: -12.70 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -58.54 4.79 -53.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.380 kcal (2) G-P(sol) polarization free energy of solvation -58.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds