Wall clock time and date at job start Fri Apr 10 2020 15:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47292 * 240.00165 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47167 * 119.99942 * 3 2 1 7 7 C 1.39918 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00315 * 197.80382 * 7 2 1 9 9 C 1.41323 * 119.99783 * 17.81096 * 7 2 1 10 10 C 1.40523 * 120.20767 * 24.61557 * 9 7 2 11 11 C 1.38752 * 119.65068 * 179.97438 * 10 9 7 12 12 C 1.48277 * 119.96823 * 179.97438 * 11 10 9 13 13 C 1.39457 * 119.93158 * 179.97438 * 12 11 10 14 14 C 1.37926 * 120.07237 * 180.02562 * 13 12 11 15 15 F 1.35092 * 120.03576 * 179.72696 * 14 13 12 16 16 C 1.40029 * 119.93030 * 0.02562 * 14 13 12 17 17 C 1.47411 * 120.06782 * 179.97438 * 16 14 13 18 18 N 1.34776 * 120.00209 * 269.99758 * 17 16 14 19 19 O 1.21608 * 119.99916 * 90.00259 * 17 16 14 20 20 C 1.40030 * 119.86259 * 0.02562 * 16 14 13 21 21 F 1.35095 * 120.03457 * 179.97438 * 20 16 14 22 22 C 1.37927 * 119.93130 * 359.97438 * 20 16 14 23 23 C 1.39865 * 120.05611 * 0.27158 * 11 10 9 24 24 C 1.38202 * 120.42004 * 359.44808 * 23 11 10 25 25 C 1.38094 * 120.35297 * 0.54968 * 24 23 11 26 26 F 1.35103 * 120.03406 * 179.74253 * 25 24 23 27 27 H 0.97006 * 119.99998 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.17432 * 359.95281 * 10 9 7 29 29 H 1.08002 * 119.96497 * 359.97438 * 13 12 11 30 30 H 0.96997 * 120.00055 * 359.97438 * 18 17 16 31 31 H 0.97004 * 119.99610 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.96332 * 180.02562 * 22 20 16 33 33 H 1.08002 * 119.78678 * 179.70561 * 23 11 10 34 34 H 1.08003 * 119.82363 * 180.26051 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6964 1.2126 7 6 2.0081 -1.2117 0.0005 8 1 3.0493 -1.2341 0.2865 9 6 1.3522 -2.4064 -0.3733 10 6 0.2249 -2.3618 -1.2110 11 6 -0.4098 -3.5419 -1.5713 12 6 -1.6002 -3.5029 -2.4544 13 6 -2.2373 -4.6895 -2.8164 14 6 -3.3445 -4.6566 -3.6382 15 9 -3.9577 -5.8069 -3.9929 16 6 -3.8286 -3.4301 -4.1096 17 6 -5.0114 -3.3915 -4.9885 18 7 -4.8597 -3.4601 -6.3259 19 8 -6.1240 -3.2977 -4.5068 20 6 -3.1861 -2.2405 -3.7452 21 9 -3.6499 -1.0553 -4.1984 22 6 -2.0793 -2.2799 -2.9231 23 6 0.0686 -4.7676 -1.0970 24 6 1.1805 -4.8150 -0.2776 25 6 1.8254 -3.6511 0.0916 26 9 2.9088 -3.7046 0.8971 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1458 -1.4139 -1.5723 29 1 -1.8627 -5.6352 -2.4536 30 1 -3.9722 -3.5345 -6.7102 31 1 -5.6381 -3.4344 -6.9042 32 1 -1.5837 -1.3627 -2.6414 33 1 -0.4317 -5.6831 -1.3763 34 1 1.5442 -5.7672 0.0797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244677765.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:57 Heat of formation + Delta-G solvation = -138.526744 kcal Electronic energy + Delta-G solvation = -25676.475718 eV Core-core repulsion = 21316.878966 eV Total energy + Delta-G solvation = -4359.596752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.07050 -49.00192 -47.45218 -39.79996 -38.75286 -37.02088 -34.12383 -33.80843 -31.91010 -30.66101 -29.84750 -28.45911 -25.70089 -24.16067 -23.06640 -21.39022 -21.21911 -20.31388 -18.38496 -17.95657 -17.31380 -17.12238 -16.99483 -16.40106 -15.84061 -15.71286 -15.34576 -15.31924 -15.15349 -14.65072 -14.41632 -14.25403 -14.22261 -14.21074 -13.31007 -12.92713 -12.80614 -12.35883 -12.12345 -12.08193 -11.91422 -11.63755 -11.44094 -11.20024 -11.02264 -10.66904 -10.32017 -10.23067 -9.90448 -9.75392 -9.51713 -9.09721 -8.74770 -7.88766 -7.36331 -7.04525 -4.66232 0.62128 1.06568 2.34425 2.35101 2.51327 2.94394 2.95456 2.99674 3.29066 3.52691 3.73792 3.75208 4.33389 4.37787 4.58442 4.81140 4.86341 5.20692 5.22245 5.60959 5.70138 5.74244 5.79141 5.91634 6.07016 6.20020 6.28551 6.53083 6.60496 6.76682 6.83860 6.92815 7.06113 7.15369 7.26621 7.53809 7.63579 7.78222 8.01342 8.21603 8.46268 8.52305 9.86934 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.004002 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.842975 B = 6994.173196 C = 8646.249167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.080 3.920 10 C -0.111 4.111 11 C -0.072 4.072 12 C 0.074 3.926 13 C -0.170 4.170 14 C 0.163 3.837 15 F -0.129 7.129 16 C -0.232 4.232 17 C 0.580 3.420 18 N -0.843 5.843 19 O -0.527 6.527 20 C 0.166 3.834 21 F -0.127 7.127 22 C -0.162 4.162 23 C -0.196 4.196 24 C -0.121 4.121 25 C -0.015 4.015 26 F -0.159 7.159 27 H 0.288 0.712 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.405 0.595 31 H 0.404 0.596 32 H 0.158 0.842 33 H 0.106 0.894 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -3.743 -9.725 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.077 3.923 10 C -0.130 4.130 11 C -0.072 4.072 12 C 0.073 3.927 13 C -0.188 4.188 14 C 0.143 3.857 15 F -0.107 7.107 16 C -0.237 4.237 17 C 0.364 3.636 18 N -0.406 5.406 19 O -0.402 6.402 20 C 0.146 3.854 21 F -0.105 7.105 22 C -0.180 4.180 23 C -0.216 4.216 24 C -0.140 4.140 25 C -0.035 4.035 26 F -0.138 7.138 27 H 0.099 0.901 28 H 0.153 0.847 29 H 0.169 0.831 30 H 0.233 0.767 31 H 0.236 0.764 32 H 0.175 0.825 33 H 0.124 0.876 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.577 -3.503 -9.221 10.874 hybrid contribution 0.387 0.683 -0.324 0.849 sum -4.190 -2.820 -9.545 10.799 Atomic orbital electron populations 1.69760 1.07646 1.30244 1.33398 1.25943 0.94833 1.01693 0.91840 0.86238 0.80173 0.79419 0.80384 1.18487 1.19990 1.18667 1.19541 0.98593 0.90776 1.38727 0.89550 1.17527 0.92508 0.91166 0.91111 1.21407 0.97124 0.96384 0.98125 1.18325 0.94613 0.94707 0.99579 1.18768 0.92466 0.90496 0.90931 1.21216 0.95994 1.00679 1.00954 1.17034 0.92231 0.79817 0.96585 1.91525 1.82017 1.46962 1.90194 1.19538 1.01836 0.92922 1.09418 1.17794 0.88108 0.75177 0.82558 1.43780 1.13025 1.77004 1.06827 1.90855 1.25774 1.48255 1.75343 1.17078 0.93323 0.79255 0.95715 1.91537 1.87951 1.43902 1.87106 1.21391 0.96550 1.00733 0.99373 1.20213 0.99925 0.95594 1.05821 1.20438 0.97150 0.96000 1.00436 1.17986 0.90548 0.94724 1.00258 1.91295 1.53349 1.97288 1.71905 0.90086 0.84700 0.83121 0.76654 0.76423 0.82484 0.87643 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.15 10.96 55.55 0.61 -17.54 16 2 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 3 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -10.97 8.78 -37.78 -0.33 -11.30 16 8 H 0.09 2.10 7.73 -52.49 -0.41 1.69 16 9 C 0.08 1.94 5.58 -106.80 -0.60 1.35 16 10 C -0.11 -2.48 8.06 -38.53 -0.31 -2.79 16 11 C -0.07 -1.41 5.87 -104.97 -0.62 -2.03 16 12 C 0.07 1.25 5.88 -104.86 -0.62 0.63 16 13 C -0.17 -2.51 9.38 -39.24 -0.37 -2.88 16 14 C 0.16 2.39 7.28 -39.02 -0.28 2.10 16 15 F -0.13 -1.84 16.82 2.25 0.04 -1.80 16 16 C -0.23 -3.49 5.64 -104.82 -0.59 -4.08 16 17 C 0.58 8.56 6.79 -12.53 -0.08 8.47 16 18 N -0.84 -8.15 8.87 30.43 0.27 -7.88 16 19 O -0.53 -9.79 17.94 5.27 0.09 -9.70 16 20 C 0.17 2.59 7.28 -39.02 -0.28 2.30 16 21 F -0.13 -1.98 16.82 2.25 0.04 -1.95 16 22 C -0.16 -2.65 9.38 -39.24 -0.37 -3.02 16 23 C -0.20 -3.69 9.43 -38.99 -0.37 -4.06 16 24 C -0.12 -2.45 9.99 -39.65 -0.40 -2.84 16 25 C -0.01 -0.34 7.31 -38.57 -0.28 -0.62 16 26 F -0.16 -3.72 16.70 2.25 0.04 -3.68 16 27 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 28 H 0.14 3.00 4.27 -52.49 -0.22 2.77 16 29 H 0.15 1.97 6.16 -52.49 -0.32 1.65 16 30 H 0.40 2.88 8.81 -40.82 -0.36 2.52 16 31 H 0.40 3.10 8.93 -40.82 -0.36 2.73 16 32 H 0.16 2.64 6.17 -52.49 -0.32 2.32 16 33 H 0.11 1.65 6.16 -52.49 -0.32 1.33 16 34 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -27.53 315.37 -6.66 -34.19 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -1.88 Total: 8.59 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -5.58 Total: -17.11 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.88 Total: -25.43 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.53 -6.66 -34.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244677765.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.341 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds