Wall clock time and date at job start Fri Apr 10 2020 15:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47292 * 240.00165 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47167 * 119.99942 * 3 2 1 7 7 C 1.39918 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00315 * 197.80382 * 7 2 1 9 9 C 1.41323 * 119.99783 * 17.81096 * 7 2 1 10 10 C 1.40523 * 120.20767 * 24.61557 * 9 7 2 11 11 C 1.38752 * 119.65068 * 179.97438 * 10 9 7 12 12 C 1.48277 * 119.96823 * 179.97438 * 11 10 9 13 13 C 1.39457 * 119.93158 * 179.97438 * 12 11 10 14 14 C 1.37926 * 120.07237 * 180.02562 * 13 12 11 15 15 F 1.35092 * 120.03576 * 179.72696 * 14 13 12 16 16 C 1.40029 * 119.93030 * 0.02562 * 14 13 12 17 17 C 1.47411 * 120.06782 * 179.97438 * 16 14 13 18 18 N 1.34776 * 120.00209 * 269.99758 * 17 16 14 19 19 O 1.21608 * 119.99916 * 90.00259 * 17 16 14 20 20 C 1.40030 * 119.86259 * 0.02562 * 16 14 13 21 21 F 1.35095 * 120.03457 * 179.97438 * 20 16 14 22 22 C 1.37927 * 119.93130 * 359.97438 * 20 16 14 23 23 C 1.39865 * 120.05611 * 0.27158 * 11 10 9 24 24 C 1.38202 * 120.42004 * 359.44808 * 23 11 10 25 25 C 1.38094 * 120.35297 * 0.54968 * 24 23 11 26 26 F 1.35103 * 120.03406 * 179.74253 * 25 24 23 27 27 H 0.97006 * 119.99998 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.17432 * 359.95281 * 10 9 7 29 29 H 1.08002 * 119.96497 * 359.97438 * 13 12 11 30 30 H 0.96997 * 120.00055 * 359.97438 * 18 17 16 31 31 H 0.97004 * 119.99610 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.96332 * 180.02562 * 22 20 16 33 33 H 1.08002 * 119.78678 * 179.70561 * 23 11 10 34 34 H 1.08003 * 119.82363 * 180.26051 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6964 1.2126 7 6 2.0081 -1.2117 0.0005 8 1 3.0493 -1.2341 0.2865 9 6 1.3522 -2.4064 -0.3733 10 6 0.2249 -2.3618 -1.2110 11 6 -0.4098 -3.5419 -1.5713 12 6 -1.6002 -3.5029 -2.4544 13 6 -2.2373 -4.6895 -2.8164 14 6 -3.3445 -4.6566 -3.6382 15 9 -3.9577 -5.8069 -3.9929 16 6 -3.8286 -3.4301 -4.1096 17 6 -5.0114 -3.3915 -4.9885 18 7 -4.8597 -3.4601 -6.3259 19 8 -6.1240 -3.2977 -4.5068 20 6 -3.1861 -2.2405 -3.7452 21 9 -3.6499 -1.0553 -4.1984 22 6 -2.0793 -2.2799 -2.9231 23 6 0.0686 -4.7676 -1.0970 24 6 1.1805 -4.8150 -0.2776 25 6 1.8254 -3.6511 0.0916 26 9 2.9088 -3.7046 0.8971 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1458 -1.4139 -1.5723 29 1 -1.8627 -5.6352 -2.4536 30 1 -3.9722 -3.5345 -6.7102 31 1 -5.6381 -3.4344 -6.9042 32 1 -1.5837 -1.3627 -2.6414 33 1 -0.4317 -5.6831 -1.3763 34 1 1.5442 -5.7672 0.0797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244677765.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:55:57 Heat of formation + Delta-G solvation = -154.175876 kcal Electronic energy + Delta-G solvation = -25677.154315 eV Core-core repulsion = 21316.878966 eV Total energy + Delta-G solvation = -4360.275349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.25875 -50.22529 -49.23079 -41.02509 -40.11492 -38.51203 -35.76389 -34.90438 -33.28418 -32.08204 -31.34683 -29.91580 -27.37945 -25.50356 -24.42288 -22.80824 -22.63515 -21.72674 -19.70563 -19.22297 -18.63879 -18.42082 -18.23004 -17.99074 -17.16655 -17.02200 -16.78978 -16.52519 -16.47522 -16.18521 -16.00367 -15.85975 -15.44684 -15.42190 -14.79571 -14.47450 -14.19598 -13.77674 -13.62876 -13.51370 -13.44551 -13.05192 -13.01525 -12.70360 -12.51957 -12.17113 -11.93822 -11.50414 -11.37504 -11.15391 -10.89699 -10.49834 -9.96928 -9.56563 -8.95755 -8.70265 -6.45010 -0.69548 -0.16594 0.79639 0.88649 1.18273 1.38571 1.47047 1.50649 2.13248 2.18003 2.25599 2.51982 2.70132 3.13214 3.39275 3.50585 3.62514 3.68206 3.92652 4.06163 4.29741 4.36046 4.49247 4.58113 4.69171 4.78330 4.89522 5.03798 5.16761 5.31492 5.43495 5.56241 5.66563 5.66885 5.91295 5.94565 6.11860 6.14138 6.47163 6.73538 6.80129 7.05006 8.20999 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.004002 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.842975 B = 6994.173196 C = 8646.249167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.045 3.955 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.072 0.928 9 C 0.052 3.948 10 C -0.132 4.132 11 C -0.067 4.067 12 C 0.057 3.943 13 C -0.149 4.149 14 C 0.168 3.832 15 F -0.122 7.122 16 C -0.223 4.223 17 C 0.576 3.424 18 N -0.815 5.815 19 O -0.571 6.571 20 C 0.164 3.836 21 F -0.129 7.129 22 C -0.161 4.161 23 C -0.182 4.182 24 C -0.120 4.120 25 C -0.049 4.049 26 F -0.169 7.169 27 H 0.294 0.706 28 H 0.128 0.872 29 H 0.176 0.824 30 H 0.420 0.580 31 H 0.418 0.582 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 -5.134 -11.276 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.172 4.172 3 Si 0.798 3.202 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.049 3.951 10 C -0.151 4.151 11 C -0.067 4.067 12 C 0.057 3.943 13 C -0.168 4.168 14 C 0.148 3.852 15 F -0.100 7.100 16 C -0.228 4.228 17 C 0.359 3.641 18 N -0.379 5.379 19 O -0.450 6.450 20 C 0.144 3.856 21 F -0.107 7.107 22 C -0.180 4.180 23 C -0.201 4.201 24 C -0.139 4.139 25 C -0.069 4.069 26 F -0.148 7.148 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.193 0.807 30 H 0.252 0.748 31 H 0.252 0.748 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.603 -4.916 -10.826 13.144 hybrid contribution 0.589 0.947 0.027 1.116 sum -5.014 -3.969 -10.799 12.550 Atomic orbital electron populations 1.69786 1.08601 1.31245 1.34110 1.26599 0.95512 1.04065 0.91001 0.85306 0.78994 0.75801 0.80107 1.18195 1.18718 1.18905 1.19658 0.98391 0.92395 1.41567 0.91012 1.17871 0.93595 0.91729 0.91905 1.21403 0.97457 0.97369 0.98903 1.18562 0.94874 0.94226 0.99034 1.18577 0.92380 0.91499 0.91860 1.21324 0.95163 1.00653 0.99648 1.16942 0.92108 0.79792 0.96341 1.91551 1.81878 1.46526 1.90070 1.19681 1.01353 0.92869 1.08924 1.17826 0.87198 0.75206 0.83885 1.43569 1.14675 1.74383 1.05269 1.90848 1.27012 1.50829 1.76347 1.16991 0.93267 0.79480 0.95873 1.91533 1.87940 1.44104 1.87111 1.21305 0.96775 1.00440 0.99466 1.20721 0.98845 0.96780 1.03734 1.20799 0.96985 0.96110 0.99971 1.18388 0.91274 0.95785 1.01486 1.91254 1.53905 1.97360 1.72328 0.89474 0.85487 0.80666 0.74807 0.74833 0.83685 0.83378 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.79 10.96 21.82 0.24 -38.55 16 2 C 0.05 2.12 5.14 85.25 0.44 2.56 16 3 Si 0.98 36.12 29.59 68.60 2.03 38.15 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.49 -25.37 8.78 23.44 0.21 -25.16 16 8 H 0.07 3.74 7.73 -2.91 -0.02 3.71 16 9 C 0.05 2.61 5.58 -21.28 -0.12 2.50 16 10 C -0.13 -6.03 8.06 22.95 0.19 -5.84 16 11 C -0.07 -2.54 5.87 -20.09 -0.12 -2.66 16 12 C 0.06 1.83 5.88 -20.02 -0.12 1.71 16 13 C -0.15 -3.88 9.38 22.49 0.21 -3.67 16 14 C 0.17 4.36 7.28 22.63 0.16 4.53 16 15 F -0.12 -3.03 16.82 44.97 0.76 -2.28 16 16 C -0.22 -6.18 5.64 -19.99 -0.11 -6.29 16 17 C 0.58 15.68 6.79 86.66 0.59 16.27 16 18 N -0.81 -13.35 8.87 -175.90 -1.56 -14.91 16 19 O -0.57 -20.38 17.94 -4.06 -0.07 -20.45 16 20 C 0.16 4.87 7.28 22.63 0.16 5.04 16 21 F -0.13 -3.90 16.82 44.97 0.76 -3.15 16 22 C -0.16 -5.16 9.38 22.49 0.21 -4.95 16 23 C -0.18 -6.33 9.43 22.66 0.21 -6.12 16 24 C -0.12 -4.65 9.99 22.23 0.22 -4.43 16 25 C -0.05 -2.32 7.31 22.92 0.17 -2.16 16 26 F -0.17 -8.18 16.70 44.97 0.75 -7.43 16 27 H 0.29 12.71 8.30 -92.70 -0.77 11.94 16 28 H 0.13 5.90 4.27 -2.91 -0.01 5.88 16 29 H 0.18 3.65 6.16 -2.91 -0.02 3.64 16 30 H 0.42 4.53 8.81 -92.71 -0.82 3.72 16 31 H 0.42 5.15 8.93 -92.71 -0.83 4.32 16 32 H 0.15 5.01 6.17 -2.91 -0.02 5.00 16 33 H 0.15 3.86 6.16 -2.91 -0.02 3.84 16 34 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -61.71 315.37 4.80 -56.91 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.41 Total: 20.38 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 2.30 Total: -28.69 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -1.32 Total: -53.46 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.07 Total: -20.45 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 2.26 Total: -12.85 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -61.71 4.80 -56.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244677765.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.261 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds