Wall clock time and date at job start Fri Apr 10 2020 15:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48502 * 109.46655 * 269.99909 * 3 2 1 5 5 H 1.48504 * 109.46974 * 29.99669 * 3 2 1 6 6 H 1.48493 * 109.46920 * 149.99964 * 3 2 1 7 7 C 1.37875 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99886 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00204 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47477 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47505 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00340 * 180.02562 * 11 10 9 13 13 O 1.21568 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.47779 * 120.00212 * 180.02562 * 12 11 10 15 15 C 1.39441 * 120.09797 * 0.02562 * 14 12 11 16 16 C 1.38993 * 119.74219 * 179.97438 * 15 14 12 17 17 C 1.48473 * 120.02227 * 179.97438 * 16 15 14 18 18 N 1.34046 * 126.67686 * 359.71005 * 17 16 15 19 19 N 1.28984 * 107.27018 * 179.83148 * 18 17 16 20 20 N 1.28735 * 108.94304 * 0.43554 * 19 18 17 21 21 H 0.97000 * 125.33891 * 179.72415 * 20 19 18 22 22 N 1.28872 * 109.31358 * 359.72472 * 20 19 18 23 23 C 1.39454 * 119.94719 * 359.97438 * 16 15 14 24 24 C 1.38055 * 120.20014 * 0.02562 * 23 16 15 25 25 C 1.38233 * 120.25617 * 359.97438 * 24 23 16 26 26 Cl 1.73599 * 119.97198 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47212 * 60.00263 * 9 7 2 29 29 H 1.09001 * 109.47593 * 300.00259 * 9 7 2 30 30 H 1.09005 * 109.46909 * 60.00576 * 10 9 7 31 31 H 1.09000 * 109.47411 * 300.00387 * 10 9 7 32 32 H 0.97006 * 119.99824 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.12589 * 359.97438 * 15 14 12 34 34 H 1.08005 * 119.90086 * 180.28083 * 23 16 15 35 35 H 1.08001 * 119.87237 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0014 11 7 5.4865 -2.6367 0.0014 12 6 6.1603 -3.8038 0.0020 13 8 5.5525 -4.8566 0.0030 14 6 7.6381 -3.8039 0.0027 15 6 8.3374 -2.5975 0.0031 16 6 9.7273 -2.6062 0.0043 17 6 10.4782 -1.3253 0.0042 18 7 9.9557 -0.0909 -0.0023 19 7 10.9406 0.7419 0.0038 20 7 12.0459 0.0819 0.0046 21 1 12.9333 0.4736 0.0049 22 7 11.7884 -1.1808 0.0048 23 6 10.4159 -3.8188 0.0055 24 6 9.7213 -5.0119 0.0050 25 6 8.3390 -5.0130 0.0039 26 17 7.4729 -6.5175 0.0040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8751 -0.6798 0.8894 29 1 3.8745 -0.6809 -0.8905 30 1 3.6578 -3.1514 -0.8880 31 1 3.6584 -3.1495 0.8920 32 1 5.9715 -1.7966 0.0010 33 1 7.8011 -1.6601 0.0026 34 1 11.4959 -3.8247 0.0109 35 1 10.2599 -5.9480 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:23 Heat of formation + Delta-G solvation = 112.232050 kcal Electronic energy + Delta-G solvation = -23068.714023 eV Core-core repulsion = 19324.000382 eV Total energy + Delta-G solvation = -3744.713641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.84286 -40.29538 -38.49452 -36.60790 -35.01912 -34.74760 -33.89802 -32.90589 -31.84815 -30.74905 -29.87189 -25.65713 -24.96784 -24.77361 -23.52967 -22.16703 -20.79649 -20.33005 -19.56773 -18.08672 -17.52367 -16.92672 -16.58538 -16.00077 -15.68152 -15.15724 -14.78576 -14.60986 -14.23539 -14.11306 -13.91144 -13.40554 -13.00244 -12.86036 -12.57081 -12.45119 -12.19579 -12.02342 -11.70820 -11.50347 -11.45716 -11.20882 -11.17667 -10.94577 -10.36790 -10.17479 -9.91680 -9.50286 -9.40870 -9.23438 -8.93378 -8.61207 -8.50594 -6.07927 -4.08068 0.11986 0.55776 0.79220 1.81415 1.83154 1.97017 2.84939 3.19841 3.29528 3.37344 3.39221 3.42625 3.59022 3.76542 4.35396 4.41551 4.44143 4.71251 4.83668 4.86842 5.07807 5.11389 5.25310 5.36671 5.57335 5.70283 5.83607 5.97077 6.09936 6.16733 6.23002 6.58644 6.71127 7.15732 7.26304 7.69308 7.75328 7.83606 8.43927 8.50476 8.96379 9.52375 11.05042 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003868 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.257153 B = 7236.217744 C =10129.027093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.131 3.869 11 N -0.718 5.718 12 C 0.545 3.455 13 O -0.517 6.517 14 C -0.122 4.122 15 C -0.033 4.033 16 C -0.024 4.024 17 C 0.219 3.781 18 N -0.262 5.262 19 N -0.043 5.043 20 N -0.227 5.227 21 H 0.476 0.524 22 N -0.293 5.293 23 C -0.049 4.049 24 C -0.123 4.123 25 C 0.030 3.970 26 Cl -0.020 7.020 27 H 0.264 0.736 28 H 0.023 0.977 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.395 0.605 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.877 -4.809 0.042 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.010 3.990 11 N -0.369 5.369 12 C 0.330 3.670 13 O -0.394 6.394 14 C -0.126 4.126 15 C -0.054 4.054 16 C -0.028 4.028 17 C -0.060 4.060 18 N -0.135 5.135 19 N -0.038 5.038 20 N -0.073 5.073 21 H 0.331 0.669 22 N -0.145 5.145 23 C -0.069 4.069 24 C -0.141 4.141 25 C 0.001 3.999 26 Cl 0.010 6.990 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.230 0.770 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 29.196 -4.906 0.042 29.605 hybrid contribution 1.134 1.173 -0.020 1.632 sum 30.330 -3.732 0.022 30.559 Atomic orbital electron populations 1.69903 1.06305 1.27041 1.50472 1.24989 0.94748 0.99139 0.94344 0.86778 0.80371 0.83545 0.78589 1.20184 1.21299 1.18907 1.20907 0.88607 0.94898 1.51653 0.90582 1.19811 0.98030 0.91296 0.96983 1.21561 0.75289 1.00293 1.01891 1.46288 1.09437 1.07533 1.73648 1.17936 0.85931 0.84864 0.78319 1.90871 1.69201 1.30414 1.48904 1.19913 0.95001 0.91975 1.05702 1.21366 0.92487 0.98017 0.93550 1.17098 0.91671 0.87398 1.06635 1.23528 0.86485 0.94133 1.01887 1.76165 1.21685 0.98330 1.17305 1.78989 0.88409 1.22127 1.14313 1.47748 1.11697 1.01881 1.45950 0.66934 1.74880 1.17405 1.00098 1.22080 1.21242 1.00819 0.90027 0.94834 1.20992 0.91501 0.99281 1.02363 1.21260 0.92383 0.88380 0.97860 1.98442 1.76446 1.28501 1.95635 0.92570 0.95887 0.96321 0.91637 0.91619 0.76998 0.83285 0.83662 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.02 -0.54 4.16 -27.89 -0.12 -0.65 16 10 C 0.13 2.66 5.61 -4.04 -0.02 2.64 16 11 N -0.72 -11.89 5.51 -61.27 -0.34 -12.22 16 12 C 0.54 8.95 7.76 -12.36 -0.10 8.86 16 13 O -0.52 -10.01 13.95 5.31 0.07 -9.93 16 14 C -0.12 -1.58 5.87 -104.98 -0.62 -2.19 16 15 C -0.03 -0.37 9.19 -38.85 -0.36 -0.72 16 16 C -0.02 -0.24 5.87 -104.95 -0.62 -0.86 16 17 C 0.22 2.22 7.93 -156.30 -1.24 0.98 16 18 N -0.26 -3.01 12.22 32.16 0.39 -2.62 16 19 N -0.04 -0.41 13.47 60.35 0.81 0.40 16 20 N -0.23 -1.39 7.90 60.35 0.48 -0.91 16 21 H 0.48 0.55 8.96 -340.37 -3.05 -2.50 16 22 N -0.29 -2.38 12.07 32.17 0.39 -1.99 16 23 C -0.05 -0.38 9.69 -39.20 -0.38 -0.76 16 24 C -0.12 -1.03 9.80 -39.65 -0.39 -1.42 16 25 C 0.03 0.35 6.35 -39.02 -0.25 0.11 16 26 Cl -0.02 -0.26 26.00 -51.86 -1.35 -1.61 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 29 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.40 5.58 6.50 -40.82 -0.27 5.31 16 33 H 0.15 1.58 6.22 -52.49 -0.33 1.25 16 34 H 0.15 0.81 7.87 -52.48 -0.41 0.40 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -34.74 325.63 -8.72 -43.45 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.68 Total: -2.24 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -4.51 Total: -7.09 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 2.51 Total: -44.04 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.35 Total: -1.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.74 -8.72 -43.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.684 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds