Wall clock time and date at job start Fri Apr 10 2020 15:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48502 * 109.46655 * 269.99909 * 3 2 1 5 5 H 1.48504 * 109.46974 * 29.99669 * 3 2 1 6 6 H 1.48493 * 109.46920 * 149.99964 * 3 2 1 7 7 C 1.37875 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99886 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00204 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47477 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47505 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00340 * 180.02562 * 11 10 9 13 13 O 1.21568 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.47779 * 120.00212 * 180.02562 * 12 11 10 15 15 C 1.39441 * 120.09797 * 0.02562 * 14 12 11 16 16 C 1.38993 * 119.74219 * 179.97438 * 15 14 12 17 17 C 1.48473 * 120.02227 * 179.97438 * 16 15 14 18 18 N 1.34046 * 126.67686 * 359.71005 * 17 16 15 19 19 N 1.28984 * 107.27018 * 179.83148 * 18 17 16 20 20 N 1.28735 * 108.94304 * 0.43554 * 19 18 17 21 21 H 0.97000 * 125.33891 * 179.72415 * 20 19 18 22 22 N 1.28872 * 109.31358 * 359.72472 * 20 19 18 23 23 C 1.39454 * 119.94719 * 359.97438 * 16 15 14 24 24 C 1.38055 * 120.20014 * 0.02562 * 23 16 15 25 25 C 1.38233 * 120.25617 * 359.97438 * 24 23 16 26 26 Cl 1.73599 * 119.97198 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47212 * 60.00263 * 9 7 2 29 29 H 1.09001 * 109.47593 * 300.00259 * 9 7 2 30 30 H 1.09005 * 109.46909 * 60.00576 * 10 9 7 31 31 H 1.09000 * 109.47411 * 300.00387 * 10 9 7 32 32 H 0.97006 * 119.99824 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.12589 * 359.97438 * 15 14 12 34 34 H 1.08005 * 119.90086 * 180.28083 * 23 16 15 35 35 H 1.08001 * 119.87237 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0014 11 7 5.4865 -2.6367 0.0014 12 6 6.1603 -3.8038 0.0020 13 8 5.5525 -4.8566 0.0030 14 6 7.6381 -3.8039 0.0027 15 6 8.3374 -2.5975 0.0031 16 6 9.7273 -2.6062 0.0043 17 6 10.4782 -1.3253 0.0042 18 7 9.9557 -0.0909 -0.0023 19 7 10.9406 0.7419 0.0038 20 7 12.0459 0.0819 0.0046 21 1 12.9333 0.4736 0.0049 22 7 11.7884 -1.1808 0.0048 23 6 10.4159 -3.8188 0.0055 24 6 9.7213 -5.0119 0.0050 25 6 8.3390 -5.0130 0.0039 26 17 7.4729 -6.5175 0.0040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8751 -0.6798 0.8894 29 1 3.8745 -0.6809 -0.8905 30 1 3.6578 -3.1514 -0.8880 31 1 3.6584 -3.1495 0.8920 32 1 5.9715 -1.7966 0.0010 33 1 7.8011 -1.6601 0.0026 34 1 11.4959 -3.8247 0.0109 35 1 10.2599 -5.9480 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:56:23 Heat of formation + Delta-G solvation = 86.681382 kcal Electronic energy + Delta-G solvation = -23069.821984 eV Core-core repulsion = 19324.000382 eV Total energy + Delta-G solvation = -3745.821602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.49741 -41.34112 -39.59470 -37.52898 -36.61797 -35.43316 -34.83924 -34.60220 -33.01657 -31.55896 -31.46022 -27.14894 -25.89802 -25.56156 -24.56076 -23.14115 -22.46071 -21.49417 -20.23536 -19.14262 -18.94961 -18.16850 -17.49728 -17.08278 -16.60850 -16.56014 -16.21907 -15.90200 -15.44162 -15.20347 -15.00918 -14.76317 -14.41316 -14.25560 -13.58212 -13.33452 -13.23665 -13.05593 -12.98550 -12.75680 -12.39524 -12.35436 -12.19153 -12.15042 -12.01031 -11.75311 -11.71099 -11.48491 -10.77261 -10.61256 -10.33899 -10.02322 -9.69837 -8.28643 -6.35400 -0.65848 -0.25121 0.12831 1.05942 1.08247 1.39250 1.40762 1.42591 1.54054 1.84125 2.13565 2.38090 2.53851 2.60738 3.05688 3.06655 3.54241 3.59376 3.93073 4.00857 4.15012 4.27488 4.39055 4.40383 4.45802 4.65372 4.77536 4.81581 4.95299 5.10190 5.15826 5.40220 5.42315 5.43682 5.60198 5.65031 6.23693 6.53418 6.72589 7.08542 7.19010 7.29220 8.88084 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003868 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.257153 B = 7236.217744 C =10129.027093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.031 0.969 9 C -0.015 4.015 10 C 0.148 3.852 11 N -0.712 5.712 12 C 0.544 3.456 13 O -0.553 6.553 14 C -0.139 4.139 15 C -0.032 4.032 16 C -0.025 4.025 17 C 0.208 3.792 18 N -0.294 5.294 19 N -0.056 5.056 20 N -0.197 5.197 21 H 0.496 0.504 22 N -0.281 5.281 23 C -0.027 4.027 24 C -0.108 4.108 25 C 0.018 3.982 26 Cl -0.042 7.042 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.409 0.591 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.456 -3.506 0.049 34.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.052 4.052 10 C 0.024 3.976 11 N -0.364 5.364 12 C 0.331 3.669 13 O -0.432 6.432 14 C -0.143 4.143 15 C -0.053 4.053 16 C -0.028 4.028 17 C -0.072 4.072 18 N -0.166 5.166 19 N -0.051 5.051 20 N -0.048 5.048 21 H 0.355 0.645 22 N -0.134 5.134 23 C -0.047 4.047 24 C -0.126 4.126 25 C -0.011 4.011 26 Cl -0.012 7.012 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.168 0.832 34 H 0.195 0.805 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 33.830 -3.586 0.050 34.019 hybrid contribution -0.168 0.722 -0.024 0.742 sum 33.662 -2.864 0.025 33.784 Atomic orbital electron populations 1.70069 1.08504 1.28373 1.52083 1.26025 0.95638 1.03683 0.93727 0.85608 0.79727 0.77645 0.79374 1.18996 1.21181 1.16107 1.21243 0.91482 0.93426 1.51386 0.95043 1.19668 0.94536 0.92997 0.98047 1.21061 0.77709 0.98438 1.00380 1.46026 1.07735 1.08680 1.74008 1.18467 0.87571 0.83938 0.76942 1.90850 1.70408 1.31532 1.50423 1.19555 0.92501 0.93426 1.08868 1.21308 0.93277 0.97173 0.93539 1.17187 0.91125 0.88254 1.06254 1.23542 0.87059 0.93878 1.02740 1.76142 1.22848 0.99062 1.18572 1.78941 0.88945 1.22174 1.15044 1.47831 1.12196 1.01268 1.43490 0.64475 1.74842 1.16375 1.00707 1.21487 1.21588 1.02207 0.88784 0.92115 1.21311 0.89916 1.00933 1.00428 1.21471 0.93574 0.87058 0.98968 1.98435 1.77226 1.29683 1.95850 0.92342 0.94572 0.94711 0.93301 0.93310 0.75346 0.83247 0.80483 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.01 0.37 5.47 84.65 0.46 0.84 16 3 Si 0.95 43.20 27.47 68.60 1.88 45.08 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 7 C -0.54 -31.01 9.66 25.60 0.25 -30.77 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 9 C -0.01 -0.67 4.16 29.85 0.12 -0.54 16 10 C 0.15 6.12 5.61 86.38 0.48 6.61 16 11 N -0.71 -23.52 5.51 -466.02 -2.57 -26.09 16 12 C 0.54 18.03 7.76 86.77 0.67 18.71 16 13 O -0.55 -22.09 13.95 -3.93 -0.05 -22.15 16 14 C -0.14 -3.49 5.87 -20.10 -0.12 -3.61 16 15 C -0.03 -0.65 9.19 22.74 0.21 -0.44 16 16 C -0.02 -0.41 5.87 -20.07 -0.12 -0.53 16 17 C 0.21 3.59 7.93 137.38 1.09 4.68 16 18 N -0.29 -6.11 12.22 -52.17 -0.64 -6.75 16 19 N -0.06 -0.93 13.47 37.02 0.50 -0.43 16 20 N -0.20 -1.76 7.90 37.02 0.29 -1.47 16 21 H 0.50 -0.62 8.96 -347.54 -3.12 -3.73 16 22 N -0.28 -3.53 12.07 -52.12 -0.63 -4.15 16 23 C -0.03 -0.31 9.69 22.52 0.22 -0.09 16 24 C -0.11 -1.43 9.80 22.22 0.22 -1.22 16 25 C 0.02 0.40 6.35 22.64 0.14 0.54 16 26 Cl -0.04 -1.08 26.00 -2.72 -0.07 -1.15 16 27 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 29 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 30 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.41 11.11 6.50 -92.70 -0.60 10.51 16 33 H 0.15 2.96 6.22 -2.91 -0.02 2.94 16 34 H 0.18 0.99 7.87 -2.91 -0.02 0.97 16 35 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -78.39 325.63 0.07 -78.32 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.59 Total: 4.15 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 3.64 Total: -5.82 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -2.74 Total: -98.43 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.15 kcal Total: -78.39 0.07 -78.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.003 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds